11:41:26Started by user devspace11:41:26Running as SYSTEM
11:41:26Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:41:26The recommended git tool is: NONE
11:41:26No credentials specified
11:41:26 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:41:26Fetching changes from the remote Git repository
11:41:26 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:41:27Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:41:27 > git --version # timeout=10
11:41:27 > git --version # 'git version 2.52.0'
11:41:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:41:29 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:41:29Checking out Revision a4715d01e84809046deb6945d69c2aa505dcf6a8 (origin/merge_ci)
11:41:29 > git config core.sparsecheckout # timeout=10
11:41:29 > git checkout -f a4715d01e84809046deb6945d69c2aa505dcf6a8 # timeout=10
11:41:30Commit message: "Add version.properties to etc/omero.properties"
11:41:30 > git rev-list --no-walk 0d859ccd1b31c9caea67b4f28d240331c0859657 # timeout=10
11:41:30Cleaning workspace
11:41:30 > git rev-parse --verify HEAD # timeout=10
11:41:30Resetting working tree
11:41:30 > git reset --hard # timeout=10
11:41:30 > git clean -fdx # timeout=10
11:42:12Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2811:42:12[OMERO-build] $ /bin/bash -xe /tmp/jenkins6807929954972183049.sh
11:42:12+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
11:42:12+ cd src
11:42:12+ export OMERO_BRANCH=merge_ci
11:42:12+ OMERO_BRANCH=merge_ci
11:42:12+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:42:12+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:42:32+ source /home/omero/settings.env
11:42:32++ OMERO_DB_HOST=pg
11:42:32++ OMERO_DB_USER=postgres
11:42:32++ OMERO_DB_PASS=
11:42:32++ OMERO_ROOT_PASS=omero
11:42:32++ OMERO_DATA_DIR=/OMERO
11:42:32++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:42:32+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:42:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:42:54Collecting zeroc-ice==3.6.5
11:42:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:42:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.9 MB/s eta 0:00:00
11:42:57Installing collected packages: zeroc-ice
11:43:01Successfully installed zeroc-ice-3.6.5
11:43:0111:43:01[notice] A new release of pip available: 22.3.1 -> 26.2
11:43:01[notice] To update, run: python3.11 -m pip install --upgrade pip
11:43:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:43:02Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:43:03Collecting setuptools<66
11:43:03 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:43:03Collecting omero-py
11:43:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
11:43:03Collecting appdirs
11:43:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:43:03Collecting future
11:43:03 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:43:03Collecting numpy<3,>=2
11:43:04 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
11:43:04Collecting Pillow>=10.0.0
11:43:04 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
11:43:04Collecting PyYAML
11:43:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:43:04Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:43:04Collecting requests
11:43:04 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
11:43:05Collecting portalocker
11:43:05 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
11:43:05Collecting charset_normalizer<4,>=2
11:43:05 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
11:43:05Collecting idna<4,>=2.5
11:43:05 Using cached idna-3.18-py3-none-any.whl (65 kB)
11:43:05Collecting urllib3<3,>=1.26
11:43:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
11:43:05Collecting certifi>=2023.5.7
11:43:05 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
11:43:05Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
11:43:07 Attempting uninstall: setuptools
11:43:07 Found existing installation: setuptools 65.5.1
11:43:07 Uninstalling setuptools-65.5.1:
11:43:08 Successfully uninstalled setuptools-65.5.1
11:44:07Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
11:44:0711:44:07[notice] A new release of pip available: 22.3.1 -> 26.2
11:44:07[notice] To update, run: python3.11 -m pip install --upgrade pip
11:44:08+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:44:08++ deactivate nondestructive
11:44:08++ '[' -n '' ']'
11:44:08++ '[' -n '' ']'
11:44:08++ hash -r
11:44:08++ '[' -n '' ']'
11:44:08++ unset VIRTUAL_ENV
11:44:08++ unset VIRTUAL_ENV_PROMPT
11:44:08++ '[' '!' nondestructive = nondestructive ']'
11:44:08++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:44:08++ export VIRTUAL_ENV
11:44:08++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:44:08++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:44:08++ export PATH
11:44:08++ '[' -n '' ']'
11:44:08++ '[' -z '' ']'
11:44:08++ _OLD_VIRTUAL_PS1=
11:44:08++ PS1='(omero-virtualenv) '
11:44:08++ export PS1
11:44:08++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:44:08++ export VIRTUAL_ENV_PROMPT
11:44:08++ hash -r
11:44:08+ source docs/hudson/OMERO.sh
11:44:08++ set -e
11:44:08++ set -u
11:44:08++ set -x
11:44:08++ source docs/hudson/functions.sh
11:44:08++ echo Building merge_ci
11:44:08Building merge_ci
11:44:08++ python3 ./build.py build-dev release-all
11:44:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:44:0911:44:09check-ivy:
11:44:09Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:44:09Created dir: /home/omero/workspace/OMERO-build/src/target
11:44:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:44:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:44:1111:44:11build-scons:
11:44:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:44:14No sub-builds to iterate on
11:44:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:44:1411:44:14buildlist:
11:44:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:44:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:44:1511:44:15clean:
11:44:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:44:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:44:1611:44:16python-clean:
11:44:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:44:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:44:16 warnings.warn(
11:44:16running clean
11:44:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:44:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:44:1711:44:17python-clean:
11:44:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:44:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:44:17 warnings.warn(
11:44:17running clean
11:44:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:44:1911:44:19python-clean:
11:44:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:44:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-626-a4715d01e8-ice36-b34') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:44:19 warnings.warn(
11:44:19running clean
11:44:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:44:19Deleting directory /home/omero/workspace/OMERO-build/src/target
11:44:2011:44:20build-scons:
11:44:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:44:2211:44:22build:
11:44:22No sub-builds to iterate on
11:44:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:44:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:44:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:44:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:44:2311:44:23tools-init:
11:44:23no-op
11:44:2411:44:24retrieve:
11:44:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:44:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:45:1011:45:10prepare:
11:45:10Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:45:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:45:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:45:1011:45:10pre-compile:
11:45:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:45:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:45:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:45:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:45:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:45:2811:45:28compile:
11:45:28no-op
11:45:2911:45:29package:
11:45:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:45:3311:45:33install:
11:45:33:: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-626-a4715d01e8-ice36-b34 :: integration :: Mon Aug 03 11:44:23 UTC 2026
11:45:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:45:33:: publishing :: omero#omero_client
11:45:33 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-626-a4715d01e8-ice36-b34/omero_client-5.6.3-626-a4715d01e8-ice36-b34.jar
11:45:33 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-626-a4715d01e8-ice36-b34/omero_client-5.6.3-626-a4715d01e8-ice36-b34.xml
11:45:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:45:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:45:3411:45:34retrieve:
11:45:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:45:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:45:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:45:3511:45:35dist:
11:45:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:45:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:45:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:45:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:45:36Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:45:36Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:45:36Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:45:37Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:45:37Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:45:3811:45:38copy-licenses:
11:45:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:45:38Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:45:38Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:45:3911:45:39copy-history:
11:45:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:45:3911:45:39copy-etc:
11:45:39Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:45:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:45:3911:45:39copy-sql:
11:45:39Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:45:4911:45:49copy-server:
11:45:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
11:45:5511:45:55copy-client:
11:45:55Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:45:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
11:46:0411:46:04update-version:
11:46:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:46:0411:46:04create-workdirs:
11:46:04Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:46:04Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:46:04Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
11:46:0411:46:04copy-luts:
11:46:04Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:46:04Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:46:0511:46:05test-compile:
11:46:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:46:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:46:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:46:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:07Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:46:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:46:0711:46:07testng-init:
11:46:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:46:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:1611:46:16,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
11:46:1611:46:16,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
11:46:1611:46:16,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:46:1611:46:16,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:46:1611:46:16,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:46:1611:46:16,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:46:1611:46:16,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:46:1611:46:16,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:46:1611:46:16,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:46:1611:46:16,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:46:1611:46:16,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:46:1611:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
11:46:1611:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:46:1611:46:16,020 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:46:1611:46:16,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:46:1611:46:16,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:46:1611:46:16,287 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:46:1611:46:16,289 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:46:1611:46:16,289 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
11:46:1611:46:16,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
11:46:1611:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:46:1611:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:46:1611:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:46:1611:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:46:1611:46:16,364 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:46:1611:46:16,364 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:46:1611:46:16,366 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
11:46:1611:46:16,368 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
11:46:1611:46:16,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:46:1611:46:16lifecycle.test-compile:
11:46:16Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:46:16Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:46:16warning: [options] bootstrap class path not set in conjunction with -source 8
11:46:16warning: [options] source value 8 is obsolete and will be removed in a future release
11:46:16warning: [options] target value 8 is obsolete and will be removed in a future release
11:46:16warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
11:46:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:18import omero.grid.RawAccessRequest;
11:46:18 ^
11:46:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:19import omero.grid.RawAccessRequest;
11:46:19 ^
11:46:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:19import omero.grid.RawAccessRequest;
11:46:19 ^
11:46:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:19import omero.model.ImportJob;
11:46:19 ^
11:46:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:46:19import omero.model.ImportJobI;
11:46:19 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:46:20 IObject link = (IObject) linkClass.newInstance();
11:46:20 ^
11:46:20 where T is a type-variable:
11:46:20 T extends Object declared in class Class
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:46:20 T copy = (T) obj.getClass().newInstance();
11:46:20 ^
11:46:20 where T is a type-variable:
11:46:20 T extends Object declared in class Class
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:20 RawAccessRequest raw = new RawAccessRequest();
11:46:20 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:20 RawAccessRequest raw = new RawAccessRequest();
11:46:20 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:46:20 raw.repoUuid = legacy.root().getHash().getValue();
11:46:20 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:46:20 raw.command = "rm";
11:46:20 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:46:20 raw.args = Arrays.asList(path);
11:46:20 ^
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:46:20 final IObject link = linkClass.newInstance();
11:46:20 ^
11:46:20 where T is a type-variable:
11:46:20 T extends Object declared in class Class
11:46:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:46:20 originalLink.setChild(annotationClass.newInstance());
11:46:20 ^
11:46:20 where T is a type-variable:
11:46:20 T extends Object declared in class Class
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:46:21 RoiResult r = svc.findByImage(id, new RoiOptions());
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:21 final RawAccessRequest request = new RawAccessRequest();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:21 final RawAccessRequest request = new RawAccessRequest();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:46:21 request.repoUuid = repo.root().getHash().getValue();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:46:21 request.command = "exists";
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:46:21 request.args = Collections.singletonList(dirPath);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:21 final RawAccessRequest request = new RawAccessRequest();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:46:21 final RawAccessRequest request = new RawAccessRequest();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:46:21 request.repoUuid = repo.root().getHash().getValue();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:46:21 request.command = "exists";
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:46:21 request.args = Collections.singletonList(dirName);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:21 final ImportJob importJob = new ImportJobI();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:46:21 final ImportJob importJob = new ImportJobI();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:46:21 importJob.setImageName(omero.rtypes.rstring(name));
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:46:21 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:46:21 final String savedName = sent.getImageName().getValue().toString();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:46:21 final String savedDesc = sent.getImageDescription().getValue().toString();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:46:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:46:21 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:46:21 ^
11:46:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:46:21 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:46:21 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 RoiResult r = svc.findByImage(image.getId().getValue(),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:46:22 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:46:22 table = svc.getTable(f.getId().getValue());
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 RoiResult r = svc.findByImage(image.getId().getValue(),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:46:22 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:46:22 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:46:22 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:46:22 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:46:22 svc.getShapeStatsRestricted(
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:46:22 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:46:22 ^
11:46:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:46:22 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:46:22 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:46:23 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:46:23 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:46:23 request.typesToIgnore = Collections.singletonList("Annotation");
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:46:23 request.typesToIgnore = Collections.singletonList("Annotation");
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:46:23 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:46:23 p2.setRelatedTo(p1);
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:46:23 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:46:23 pixels1.setRelatedTo(pixels2);
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:46:23 Pixels pixels = pixels1.getRelatedTo();
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:46:23 Assert.assertNull(pixels1.getRelatedTo());
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:46:23 pixels1.setRelatedTo(pixels2);
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:46:23 Pixels pixels = pixels1.getRelatedTo();
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:46:23 Assert.assertNull(pixels1.getRelatedTo());
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:23 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:46:23 ^
11:46:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:46:23 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:46:23 ^
11:46:23Note: Some input files use unchecked or unsafe operations.
11:46:23Note: Recompile with -Xlint:unchecked for details.
11:46:2391 warnings
11:46:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_338034415.tmp
11:46:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:46:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:23:: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-626-a4715d01e8-ice36-b34 :: integration :: Mon Aug 03 11:46:07 UTC 2026
11:46:23 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:46:23:: publishing :: omero#OmeroJava-test
11:46:24 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-626-a4715d01e8-ice36-b34.jar
11:46:24 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-626-a4715d01e8-ice36-b34.xml
11:46:2411:46:24build-eclipse:
11:46:24No sub-builds to iterate on
11:46:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:46:2411:46:24retrieve:
11:46:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:46:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:2911:46:29prepare:
11:46:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:46:3311:46:33release-clients:
11:46:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-626-a4715d01e8-ice36-b34.zip
11:46:3911:46:39release-zip:
11:46:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-626-a4715d01e8-ice36-b34.zip
11:46:5111:46:51BUILD SUCCESSFUL
11:46:51Total time: 2 minutes 43 seconds
11:46:51++ '[' -d .git ']'
11:46:51++ python3 ./build.py release-src
11:46:51Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:46:5211:46:52release-src-git:
11:46:52Releasing openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34
11:46:54 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34.zip
11:46:54 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-626-a4715d01e8-ice36-b34-base.zip
11:46:5611:46:56BUILD SUCCESSFUL
11:46:56Total time: 4 seconds
11:46:56++ echo BUILD_NUMBER=34
11:46:56++ echo OMERO_BRANCH=merge_ci
11:46:56++ git_info
11:46:56+++ git rev-parse HEAD
11:46:56++ HEAD=a4715d01e84809046deb6945d69c2aa505dcf6a8
11:46:56++ git log --max-count=1 a4715d01e84809046deb6945d69c2aa505dcf6a8
11:46:56++ env
11:46:56++ sort
11:46:56Archiving artifacts
11:47:13Finished: SUCCESS
