11:25:17Started by upstream project "Trigger" build number 3911:25:17originally caused by:
11:25:17 Started by user devspace11:25:17Running as SYSTEM
11:25:17Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:25:17The recommended git tool is: NONE
11:25:17No credentials specified
11:25:17 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:25:17Fetching changes from the remote Git repository
11:25:17 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:25:17Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:25:17 > git --version # timeout=10
11:25:17 > git --version # 'git version 2.39.3'
11:25:17 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:25:20 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:25:20Checking out Revision c81c2b8a772dd433708e44bd4130e4a409235847 (origin/merge_ci)
11:25:20 > git config core.sparsecheckout # timeout=10
11:25:20 > git checkout -f c81c2b8a772dd433708e44bd4130e4a409235847 # timeout=10
11:25:20Commit message: "Add version.properties to etc/omero.properties"
11:25:20 > git rev-list --no-walk 6ea3435dcf0a0f40d0ab0e0d00677aafae9f7dac # timeout=10
11:25:20Cleaning workspace
11:25:20 > git rev-parse --verify HEAD # timeout=10
11:25:20Resetting working tree
11:25:20 > git reset --hard # timeout=10
11:25:21 > git clean -fdx # timeout=10
11:25:21Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3411:25:21[OMERO-build] $ /bin/bash -xe /tmp/jenkins6359731721436696379.sh
11:25:21+ mv omero-scripts/dist/omero_scripts-5.8.1.dev0.tar.gz .
11:25:21+ cd src
11:25:21+ export OMERO_BRANCH=merge_ci
11:25:21+ OMERO_BRANCH=merge_ci
11:25:21+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:25:21+ source /home/omero/settings.env
11:25:21++ OMERO_DB_HOST=pg
11:25:21++ OMERO_DB_USER=postgres
11:25:21++ OMERO_DB_PASS=
11:25:21++ OMERO_ROOT_PASS=omero
11:25:21++ OMERO_DATA_DIR=/OMERO
11:25:21++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:25:21+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:25:24+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl11:25:25Collecting zeroc-ice==3.6.5
11:25:26 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
11:25:27WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
11:25:27You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:25:28+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
11:25:28Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
11:25:28Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
11:25:29Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
11:25:29Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
11:25:29Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
11:25:29Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
11:25:29Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
11:25:29Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
11:25:29Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
11:25:29Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
11:25:29Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
11:25:29Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
11:25:29Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
11:25:29Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
11:25:29WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
11:25:29You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:25:29+ source docs/hudson/OMERO.sh
11:25:29++ set -e
11:25:29++ set -u
11:25:29++ set -x
11:25:29++ source docs/hudson/functions.sh
11:25:29++ echo Building merge_ci
11:25:29Building merge_ci
11:25:29++ python3 ./build.py build-dev release-all
11:25:29OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:25:29Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:25:3011:25:30check-ivy:
11:25:30Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:25:30Created dir: /home/omero/workspace/OMERO-build/src/target
11:25:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:25:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:25:3111:25:31build-scons:
11:25:31Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:25:31No sub-builds to iterate on
11:25:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:25:3111:25:31buildlist:
11:25:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:25:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:25:3211:25:32clean:
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:25:3211:25:32python-clean:
11:25:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:25:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-453-c81c2b8a77-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:25:32 warnings.warn(
11:25:32running clean
11:25:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:25:3211:25:32python-clean:
11:25:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:25:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-453-c81c2b8a77-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:25:32 warnings.warn(
11:25:32running clean
11:25:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:25:3211:25:32python-clean:
11:25:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:25:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-453-c81c2b8a77-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:25:32 warnings.warn(
11:25:32running clean
11:25:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:25:32Deleting directory /home/omero/workspace/OMERO-build/src/target
11:25:3211:25:32build-scons:
11:25:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:25:3211:25:32build:
11:25:32No sub-builds to iterate on
11:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:25:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:25:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:25:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:25:3311:25:33tools-init:
11:25:33no-op
11:25:3311:25:33retrieve:
11:25:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:25:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:25:34WARNING: An illegal reflective access operation has occurred
11:25:34WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
11:25:34WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
11:25:34WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11:25:34WARNING: All illegal access operations will be denied in a future release
11:26:2811:26:28prepare:
11:26:28Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:26:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:26:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:26:2811:26:28pre-compile:
11:26:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:26:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:26:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:26:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:26:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:26:2911:26:29compile:
11:26:29no-op
11:26:2911:26:29package:
11:26:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:26:2911:26:29install:
11:26:29:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-453-c81c2b8a77-ice36 :: integration :: Mon Apr 15 11:25:33 UTC 2024
11:26:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:26:29:: publishing :: omero#omero_client
11:26:29 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-453-c81c2b8a77-ice36/omero_client-5.6.3-453-c81c2b8a77-ice36.jar
11:26:29 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-453-c81c2b8a77-ice36/omero_client-5.6.3-453-c81c2b8a77-ice36.xml
11:26:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:26:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:26:3011:26:30retrieve:
11:26:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:26:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:26:30Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:26:3011:26:30dist:
11:26:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:26:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:26:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:26:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:26:30Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:26:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
11:26:30Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:26:30Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:26:30Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:26:3011:26:30copy-licenses:
11:26:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:26:30Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:26:30Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:26:3011:26:30copy-history:
11:26:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:26:3011:26:30copy-etc:
11:26:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:26:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:26:3011:26:30copy-sql:
11:26:30Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:26:4311:26:43copy-server:
11:26:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
11:26:4311:26:43copy-client:
11:26:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:26:45 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
11:26:4611:26:46update-version:
11:26:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:26:4611:26:46create-workdirs:
11:26:46Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:26:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:26:4611:26:46copy-luts:
11:26:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:26:46Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:26:4611:26:46test-compile:
11:26:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:26:4611:26:46testng-init:
11:26:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:26:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:26:5211:26:51,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
11:26:5211:26:51,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - No custom configurators were discovered as a service.
11:26:5211:26:51,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:26:5211:26:51,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:26:5211:26:51,811 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:26:5211:26:51,811 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:26:5211:26:51,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 4 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:26:5211:26:51,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:26:5211:26:51,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:26:5211:26:51,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:26:5211:26:51,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:26:5211:26:51,820 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@13d8d105 - Resource [logback.xml] occurs multiple times on the classpath.
11:26:5211:26:51,820 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@13d8d105 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:26:5211:26:51,820 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@13d8d105 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:26:5211:26:52,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:26:5211:26:52,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:26:5211:26:52,174 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:26:5211:26:52,177 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@54c78734 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:26:5211:26:52,177 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@54c78734 - Please move "immediateFlush" property into the enclosing appender.
11:26:5211:26:52,269 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@54c78734 - Setting the "immediateFlush" property of the enclosing appender to true
11:26:5211:26:52,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:26:5211:26:52,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:26:5211:26:52,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:26:5211:26:52,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:26:5211:26:52,270 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:26:5211:26:52,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:26:5211:26:52,272 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7cfe97db - End of configuration.
11:26:5211:26:52,274 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@664bd35e - Registering current configuration as safe fallback point
11:26:5211:26:52,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a0c046e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 458 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:26:5211:26:52lifecycle.test-compile:
11:26:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:26:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:26:52warning: [options] bootstrap class path not set in conjunction with -source 8
11:26:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:55import omero.grid.RawAccessRequest;
11:26:55 ^
11:26:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:55import omero.grid.RawAccessRequest;
11:26:55 ^
11:26:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:55import omero.grid.RawAccessRequest;
11:26:55 ^
11:26:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:55import omero.model.ImportJob;
11:26:55 ^
11:26:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:26:55import omero.model.ImportJobI;
11:26:55 ^
11:26:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:26:56 IObject link = (IObject) linkClass.newInstance();
11:26:56 ^
11:26:56 where T is a type-variable:
11:26:56 T extends Object declared in class Class
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:26:57 T copy = (T) obj.getClass().newInstance();
11:26:57 ^
11:26:57 where T is a type-variable:
11:26:57 T extends Object declared in class Class
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:57 RawAccessRequest raw = new RawAccessRequest();
11:26:57 ^
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:57 RawAccessRequest raw = new RawAccessRequest();
11:26:57 ^
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:57 raw.repoUuid = legacy.root().getHash().getValue();
11:26:57 ^
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:57 raw.command = "rm";
11:26:57 ^
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:57 raw.args = Arrays.asList(path);
11:26:57 ^
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:26:57 final IObject link = linkClass.newInstance();
11:26:57 ^
11:26:57 where T is a type-variable:
11:26:57 T extends Object declared in class Class
11:26:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:26:57 originalLink.setChild(annotationClass.newInstance());
11:26:57 ^
11:26:57 where T is a type-variable:
11:26:57 T extends Object declared in class Class
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:58 RoiResult r = svc.findByImage(id, new RoiOptions());
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:58 final RawAccessRequest request = new RawAccessRequest();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:58 final RawAccessRequest request = new RawAccessRequest();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:58 request.repoUuid = repo.root().getHash().getValue();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:58 request.command = "exists";
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:58 request.args = Collections.singletonList(dirPath);
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:58 final RawAccessRequest request = new RawAccessRequest();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:58 final RawAccessRequest request = new RawAccessRequest();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:58 request.repoUuid = repo.root().getHash().getValue();
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:58 request.command = "exists";
11:26:58 ^
11:26:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:58 request.args = Collections.singletonList(dirName);
11:26:58 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:59 final ImportJob importJob = new ImportJobI();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:26:59 final ImportJob importJob = new ImportJobI();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:26:59 importJob.setImageName(omero.rtypes.rstring(name));
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:26:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:26:59 final String savedName = sent.getImageName().getValue().toString();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:26:59 final String savedDesc = sent.getImageDescription().getValue().toString();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:26:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:26:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 RoiResult r = svc.findByImage(image.getId().getValue(),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:26:59 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:26:59 table = svc.getTable(f.getId().getValue());
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 RoiResult r = svc.findByImage(image.getId().getValue(),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:26:59 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:26:59 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:26:59 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
11:26:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:26:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:26:59 svc.getShapeStatsRestricted(
11:26:59 ^
11:26:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:26:59 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:26:59 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:27:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:27:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:27:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:27:00 request.typesToIgnore = Collections.singletonList("Annotation");
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:27:00 request.typesToIgnore = Collections.singletonList("Annotation");
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:27:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:27:00 p2.setRelatedTo(p1);
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:27:00 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:27:00 pixels1.setRelatedTo(pixels2);
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:27:00 Pixels pixels = pixels1.getRelatedTo();
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:27:00 Assert.assertNull(pixels1.getRelatedTo());
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:27:00 pixels1.setRelatedTo(pixels2);
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:27:00 Pixels pixels = pixels1.getRelatedTo();
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:27:00 Assert.assertNull(pixels1.getRelatedTo());
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:27:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:27:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:27:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:27:00 ^
11:27:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:27:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:27:00 ^
11:27:00Note: Some input files use unchecked or unsafe operations.
11:27:00Note: Recompile with -Xlint:unchecked for details.
11:27:0088 warnings
11:27:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1184296143.tmp
11:27:00Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:27:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:27:00:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-453-c81c2b8a77-ice36 :: integration :: Mon Apr 15 11:26:46 UTC 2024
11:27:00 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:27:00:: publishing :: omero#OmeroJava-test
11:27:00 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-453-c81c2b8a77-ice36.jar
11:27:00 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-453-c81c2b8a77-ice36.xml
11:27:0011:27:00build-eclipse:
11:27:00No sub-builds to iterate on
11:27:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:27:0111:27:01retrieve:
11:27:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:27:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:27:0411:27:04prepare:
11:27:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:27:0511:27:05release-clients:
11:27:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-453-c81c2b8a77-ice36.zip
11:27:1111:27:11release-zip:
11:27:11Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-453-c81c2b8a77-ice36.zip
11:27:2511:27:25BUILD SUCCESSFUL
11:27:25Total time: 1 minute 55 seconds
11:27:25++ '[' -d .git ']'
11:27:25++ python3 ./build.py release-src
11:27:25OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:27:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:27:2511:27:25release-src-git:
11:27:25Releasing openmicroscopy-5.6.3-453-c81c2b8a77-ice36
11:27:27 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-453-c81c2b8a77-ice36.zip
11:27:27 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-453-c81c2b8a77-ice36-base.zip
11:27:2911:27:29BUILD SUCCESSFUL
11:27:29Total time: 4 seconds
11:27:29++ echo BUILD_NUMBER=34
11:27:29++ echo OMERO_BRANCH=merge_ci
11:27:29++ git_info
11:27:29+++ git rev-parse HEAD
11:27:29++ HEAD=c81c2b8a772dd433708e44bd4130e4a409235847
11:27:29++ git log --max-count=1 c81c2b8a772dd433708e44bd4130e4a409235847
11:27:29++ env
11:27:29++ sort
11:27:29Archiving artifacts
11:28:01Finished: SUCCESS
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