16:58:19Started by upstream project "Trigger" build number 39516:58:19originally caused by:
16:58:19 Started by timer
16:58:19Running as SYSTEM
16:58:19Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
16:58:19The recommended git tool is: NONE
16:58:19No credentials specified
16:58:19 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
16:58:19Fetching changes from the remote Git repository
16:58:19 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
16:58:19Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git16:58:19 > git --version # timeout=10
16:58:19 > git --version # 'git version 2.43.5'
16:58:19 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:58:20 > git rev-parse origin/merge_ci^{commit} # timeout=10
16:58:20Checking out Revision f11ef0093a748a916111b76039a372d4a27a8fec (origin/merge_ci)
16:58:20 > git config core.sparsecheckout # timeout=10
16:58:20 > git checkout -f f11ef0093a748a916111b76039a372d4a27a8fec # timeout=10
16:58:20Commit message: "Add version.properties to etc/omero.properties"
16:58:20 > git rev-list --no-walk cb36b5f3ee4bf0b41eb03284929eb19e8334568e # timeout=10
16:58:20Cleaning workspace
16:58:20 > git rev-parse --verify HEAD # timeout=10
16:58:20Resetting working tree
16:58:20 > git reset --hard # timeout=10
16:58:20 > git clean -fdx # timeout=10
16:58:20Copied 6 artifacts from "OMERO-python-superbuild-build" build number 33716:58:20[OMERO-build] $ /bin/bash -xe /tmp/jenkins14548299761825194534.sh
16:58:20+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
16:58:20+ cd src
16:58:20+ export OMERO_BRANCH=merge_ci
16:58:20+ OMERO_BRANCH=merge_ci
16:58:20+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
16:58:20+ source /home/omero/settings.env
16:58:20++ OMERO_DB_HOST=pg
16:58:20++ OMERO_DB_USER=postgres
16:58:20++ OMERO_DB_PASS=
16:58:20++ OMERO_ROOT_PASS=omero
16:58:20++ OMERO_DATA_DIR=/OMERO
16:58:20++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:58:20+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
16:58:23+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl16:58:25Collecting zeroc-ice==3.6.5
16:58:26 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
16:58:27WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
16:58:27You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
16:58:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
16:58:28Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.8.2)
16:58:28Collecting setuptools
16:58:28 Using cached setuptools-76.0.0-py3-none-any.whl (1.2 MB)
16:58:28Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
16:58:29Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
16:58:29Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
16:58:29Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
16:58:29Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
16:58:29Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
16:58:29Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
16:58:29Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
16:58:29Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
16:58:29Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
16:58:29Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
16:58:29Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
16:58:29Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
16:58:29Installing collected packages: setuptools
16:58:29 Attempting uninstall: setuptools
16:58:29 Found existing installation: setuptools 75.8.2
16:58:29 Uninstalling setuptools-75.8.2:
16:58:29 Successfully uninstalled setuptools-75.8.2
16:58:30Successfully installed setuptools-76.0.0
16:58:30WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
16:58:30You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
16:58:30+ source docs/hudson/OMERO.sh
16:58:30++ set -e
16:58:30++ set -u
16:58:30++ set -x
16:58:30++ source docs/hudson/functions.sh
16:58:30++ echo Building merge_ci
16:58:30Building merge_ci
16:58:30++ python3 ./build.py build-dev release-all
16:58:30OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
16:58:31Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:58:3116:58:31check-ivy:
16:58:31Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
16:58:31Created dir: /home/omero/workspace/OMERO-build/src/target
16:58:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:58:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:58:3216:58:32build-scons:
16:58:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:58:33No sub-builds to iterate on
16:58:33Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:58:3316:58:33buildlist:
16:58:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:58:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:58:3316:58:33clean:
16:58:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:58:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:58:3316:58:33python-clean:
16:58:33WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:58:33/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:58:33 warnings.warn(
16:58:33running clean
16:58:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:58:3416:58:34python-clean:
16:58:34WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:58:34/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:58:34 warnings.warn(
16:58:34running clean
16:58:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:58:3416:58:34python-clean:
16:58:34WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:58:34/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-f11ef0093a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:58:34 warnings.warn(
16:58:34running clean
16:58:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
16:58:34Deleting directory /home/omero/workspace/OMERO-build/src/target
16:58:3416:58:34build-scons:
16:58:34Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:58:3416:58:34build:
16:58:34No sub-builds to iterate on
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:58:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:58:3416:58:34tools-init:
16:58:34no-op
16:58:3516:58:35retrieve:
16:58:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:58:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:58:35WARNING: An illegal reflective access operation has occurred
16:58:35WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
16:58:35WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
16:58:35WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
16:58:35WARNING: All illegal access operations will be denied in a future release
16:59:0916:59:09prepare:
16:59:09Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:59:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:59:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:59:0916:59:09pre-compile:
16:59:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:59:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:59:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:59:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:59:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:59:0916:59:09compile:
16:59:09no-op
16:59:0916:59:09package:
16:59:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
16:59:1016:59:10install:
16:59:10:: delivering :: omero#omero_client;working@0ac93bfd5614 :: 5.6.3-543-f11ef0093a-ice36 :: integration :: Sun Mar 09 16:58:34 UTC 2025
16:59:10 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
16:59:10:: publishing :: omero#omero_client
16:59:10 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-f11ef0093a-ice36/omero_client-5.6.3-543-f11ef0093a-ice36.jar
16:59:10 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-f11ef0093a-ice36/omero_client-5.6.3-543-f11ef0093a-ice36.xml
16:59:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:59:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:59:1016:59:10retrieve:
16:59:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:59:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:59:11Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:59:1116:59:11dist:
16:59:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
16:59:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
16:59:11Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:59:11Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:59:11Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
16:59:11Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
16:59:11Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
16:59:11Entering /home/omero/workspace/OMERO-build/src/components/tests...
16:59:11Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:59:1116:59:11copy-licenses:
16:59:11Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:59:11Created dir: /home/omero/workspace/OMERO-build/src/dist/share
16:59:11Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
16:59:1116:59:11copy-history:
16:59:11Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:59:1216:59:12copy-etc:
16:59:12Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
16:59:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
16:59:1216:59:12copy-sql:
16:59:12Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
16:59:1916:59:19copy-server:
16:59:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
16:59:1916:59:19copy-client:
16:59:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
16:59:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
16:59:2116:59:21update-version:
16:59:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
16:59:2116:59:21create-workdirs:
16:59:21Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
16:59:21Created dir: /home/omero/workspace/OMERO-build/src/dist/var
16:59:2116:59:21copy-luts:
16:59:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:59:21Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:59:2116:59:21test-compile:
16:59:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:59:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:59:2216:59:22testng-init:
16:59:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:59:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:59:2516:59:25,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
16:59:2516:59:25,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - No custom configurators were discovered as a service.
16:59:2516:59:25,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
16:59:2516:59:25,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
16:59:2516:59:25,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
16:59:2516:59:25,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
16:59:2516:59:25,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
16:59:2516:59:25,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
16:59:2516:59:25,641 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
16:59:2516:59:25,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
16:59:2516:59:25,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:59:2516:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs multiple times on the classpath.
16:59:2516:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:59:2516:59:25,642 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@179eb386 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
16:59:2516:59:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
16:59:2516:59:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
16:59:2516:59:25,857 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
16:59:2516:59:25,859 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
16:59:2516:59:25,859 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - Please move "immediateFlush" property into the enclosing appender.
16:59:2516:59:25,920 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2896e105 - Setting the "immediateFlush" property of the enclosing appender to true
16:59:2516:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
16:59:2516:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
16:59:2516:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
16:59:2516:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
16:59:2516:59:25,921 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
16:59:2516:59:25,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
16:59:2516:59:25,922 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7c76d466 - End of configuration.
16:59:2516:59:25,924 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5748ffe3 - Registering current configuration as safe fallback point
16:59:2516:59:25,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4c1ce13a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
16:59:2516:59:25lifecycle.test-compile:
16:59:25Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:59:26Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:59:26warning: [options] bootstrap class path not set in conjunction with -source 8
16:59:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:28import omero.grid.RawAccessRequest;
16:59:28 ^
16:59:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:28import omero.grid.RawAccessRequest;
16:59:28 ^
16:59:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:28import omero.grid.RawAccessRequest;
16:59:28 ^
16:59:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:28import omero.model.ImportJob;
16:59:28 ^
16:59:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:59:28import omero.model.ImportJobI;
16:59:28 ^
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
16:59:29 IObject link = (IObject) linkClass.newInstance();
16:59:29 ^
16:59:29 where T is a type-variable:
16:59:29 T extends Object declared in class Class
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
16:59:29 T copy = (T) obj.getClass().newInstance();
16:59:29 ^
16:59:29 where T is a type-variable:
16:59:29 T extends Object declared in class Class
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:29 RawAccessRequest raw = new RawAccessRequest();
16:59:29 ^
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:29 RawAccessRequest raw = new RawAccessRequest();
16:59:29 ^
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:59:29 raw.repoUuid = legacy.root().getHash().getValue();
16:59:29 ^
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
16:59:29 raw.command = "rm";
16:59:29 ^
16:59:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
16:59:29 raw.args = Arrays.asList(path);
16:59:29 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
16:59:30 final IObject link = linkClass.newInstance();
16:59:30 ^
16:59:30 where T is a type-variable:
16:59:30 T extends Object declared in class Class
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
16:59:30 originalLink.setChild(annotationClass.newInstance());
16:59:30 ^
16:59:30 where T is a type-variable:
16:59:30 T extends Object declared in class Class
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:59:30 RoiResult r = svc.findByImage(id, new RoiOptions());
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:30 final RawAccessRequest request = new RawAccessRequest();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:30 final RawAccessRequest request = new RawAccessRequest();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:59:30 request.repoUuid = repo.root().getHash().getValue();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
16:59:30 request.command = "exists";
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
16:59:30 request.args = Collections.singletonList(dirPath);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:30 final RawAccessRequest request = new RawAccessRequest();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:59:30 final RawAccessRequest request = new RawAccessRequest();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:59:30 request.repoUuid = repo.root().getHash().getValue();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
16:59:30 request.command = "exists";
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
16:59:30 request.args = Collections.singletonList(dirName);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:30 final ImportJob importJob = new ImportJobI();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:59:30 final ImportJob importJob = new ImportJobI();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
16:59:30 importJob.setImageName(omero.rtypes.rstring(name));
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
16:59:30 importJob.setImageDescription(omero.rtypes.rstring(desc));
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:59:30 final String savedName = sent.getImageName().getValue().toString();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:59:30 final String savedDesc = sent.getImageDescription().getValue().toString();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:59:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:59:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
16:59:30 ^
16:59:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:59:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
16:59:30 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 RoiResult r = svc.findByImage(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
16:59:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
16:59:31 table = svc.getTable(f.getId().getValue());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 RoiResult r = svc.findByImage(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:59:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:59:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
16:59:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:59:31 svc.getShapeStatsRestricted(
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:59:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:59:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:59:31 request.typesToIgnore = Collections.singletonList("TagAnnotation");
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:59:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:59:31 request.typesToIgnore = Collections.singletonList("Annotation");
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:59:31 request.typesToIgnore = Collections.singletonList("Annotation");
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:59:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:59:31 p2.setRelatedTo(p1);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:59:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:59:31 pixels1.setRelatedTo(pixels2);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:59:31 Pixels pixels = pixels1.getRelatedTo();
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:59:31 Assert.assertNull(pixels1.getRelatedTo());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:59:31 pixels1.setRelatedTo(pixels2);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:59:31 Pixels pixels = pixels1.getRelatedTo();
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:59:31 Assert.assertNull(pixels1.getRelatedTo());
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:59:31 ^
16:59:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:59:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:59:31 ^
16:59:31Note: Some input files use unchecked or unsafe operations.
16:59:31Note: Recompile with -Xlint:unchecked for details.
16:59:3188 warnings
16:59:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_319631896.tmp
16:59:31Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
16:59:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:59:32:: delivering :: omero#OmeroJava-test;working@0ac93bfd5614 :: 5.6.3-543-f11ef0093a-ice36 :: integration :: Sun Mar 09 16:59:22 UTC 2025
16:59:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
16:59:32:: publishing :: omero#OmeroJava-test
16:59:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-f11ef0093a-ice36.jar
16:59:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-f11ef0093a-ice36.xml
16:59:3216:59:32build-eclipse:
16:59:32No sub-builds to iterate on
16:59:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:59:3216:59:32retrieve:
16:59:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:59:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:59:3616:59:36prepare:
16:59:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:59:3716:59:37release-clients:
16:59:37Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-543-f11ef0093a-ice36.zip
16:59:4316:59:43release-zip:
16:59:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
16:59:5616:59:56BUILD SUCCESSFUL
16:59:56Total time: 1 minute 25 seconds
16:59:56++ '[' -d .git ']'
16:59:56++ python3 ./build.py release-src
16:59:56OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
16:59:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:59:5716:59:57release-src-git:
16:59:57Releasing openmicroscopy-5.6.3-543-f11ef0093a-ice36
16:59:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-f11ef0093a-ice36.zip
16:59:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-f11ef0093a-ice36-base.zip
17:00:0017:00:00BUILD SUCCESSFUL
17:00:00Total time: 3 seconds
17:00:00++ echo BUILD_NUMBER=341
17:00:00++ echo OMERO_BRANCH=merge_ci
17:00:00++ git_info
17:00:00+++ git rev-parse HEAD
17:00:00++ HEAD=f11ef0093a748a916111b76039a372d4a27a8fec
17:00:00++ git log --max-count=1 f11ef0093a748a916111b76039a372d4a27a8fec
17:00:00++ env
17:00:00++ sort
17:00:00Archiving artifacts
17:00:28Finished: SUCCESS
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