08:22:02Started by upstream project "Trigger" build number 39608:22:02originally caused by:
08:22:02 Started by timer
08:22:02Running as SYSTEM
08:22:02Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:22:02The recommended git tool is: NONE
08:22:02No credentials specified
08:22:02 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:22:02Fetching changes from the remote Git repository
08:22:02 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:22:02Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:22:02 > git --version # timeout=10
08:22:02 > git --version # 'git version 2.43.5'
08:22:02 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:22:07 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:22:07Checking out Revision 0d4d6a64ddafe95abb5a0e181a59b83f73145144 (origin/merge_ci)
08:22:07 > git config core.sparsecheckout # timeout=10
08:22:07 > git checkout -f 0d4d6a64ddafe95abb5a0e181a59b83f73145144 # timeout=10
08:22:07Commit message: "Add version.properties to etc/omero.properties"
08:22:07 > git rev-list --no-walk f11ef0093a748a916111b76039a372d4a27a8fec # timeout=10
08:22:07Cleaning workspace
08:22:07 > git rev-parse --verify HEAD # timeout=10
08:22:07Resetting working tree
08:22:07 > git reset --hard # timeout=10
08:22:07 > git clean -fdx # timeout=10
08:22:08Copied 6 artifacts from "OMERO-python-superbuild-build" build number 33808:22:08[OMERO-build] $ /bin/bash -xe /tmp/jenkins13060179892009393386.sh
08:22:08+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
08:22:08+ cd src
08:22:08+ export OMERO_BRANCH=merge_ci
08:22:08+ OMERO_BRANCH=merge_ci
08:22:08+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:22:08+ source /home/omero/settings.env
08:22:08++ OMERO_DB_HOST=pg
08:22:08++ OMERO_DB_USER=postgres
08:22:08++ OMERO_DB_PASS=
08:22:08++ OMERO_ROOT_PASS=omero
08:22:08++ OMERO_DATA_DIR=/OMERO
08:22:08++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:22:08+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:22:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl08:22:13Collecting zeroc-ice==3.6.5
08:22:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:22:16WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
08:22:16You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:22:16+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
08:22:16Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (76.0.0)
08:22:17Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
08:22:17Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
08:22:17Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
08:22:17Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:22:17Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
08:22:17Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:22:17Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
08:22:17Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
08:22:17Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
08:22:17Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
08:22:17Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
08:22:17Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
08:22:17Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
08:22:17WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
08:22:17You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:22:17+ source docs/hudson/OMERO.sh
08:22:17++ set -e
08:22:17++ set -u
08:22:17++ set -x
08:22:17++ source docs/hudson/functions.sh
08:22:17++ echo Building merge_ci
08:22:17Building merge_ci
08:22:17++ python3 ./build.py build-dev release-all
08:22:17OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:22:18Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:22:1908:22:19check-ivy:
08:22:19Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:22:19Created dir: /home/omero/workspace/OMERO-build/src/target
08:22:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:22:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:22:2108:22:21build-scons:
08:22:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:22:21No sub-builds to iterate on
08:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:22:2208:22:22buildlist:
08:22:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:22:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:22:2208:22:22clean:
08:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:22:2208:22:22python-clean:
08:22:22WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:22:22/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:22:22 warnings.warn(
08:22:22running clean
08:22:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:22:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:22:2308:22:23python-clean:
08:22:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:22:23/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:22:23 warnings.warn(
08:22:23running clean
08:22:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:22:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:22:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:22:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:22:2308:22:23python-clean:
08:22:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:22:23/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-0d4d6a64dd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:22:23 warnings.warn(
08:22:23running clean
08:22:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:22:23Deleting directory /home/omero/workspace/OMERO-build/src/target
08:22:2308:22:23build-scons:
08:22:23Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:22:2408:22:24build:
08:22:24No sub-builds to iterate on
08:22:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:22:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:22:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:22:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:22:2408:22:24tools-init:
08:22:24no-op
08:22:2408:22:24retrieve:
08:22:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:22:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:22:25WARNING: An illegal reflective access operation has occurred
08:22:25WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:22:25WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:22:25WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:22:25WARNING: All illegal access operations will be denied in a future release
08:24:0608:24:06prepare:
08:24:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:24:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:24:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:24:0608:24:06pre-compile:
08:24:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:24:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:24:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:24:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:24:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:24:0708:24:07compile:
08:24:07no-op
08:24:0708:24:07package:
08:24:07Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:24:0708:24:07install:
08:24:07:: delivering :: omero#omero_client;working@0ac93bfd5614 :: 5.6.3-543-0d4d6a64dd-ice36 :: integration :: Mon Mar 10 08:22:24 UTC 2025
08:24:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:24:07:: publishing :: omero#omero_client
08:24:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-0d4d6a64dd-ice36/omero_client-5.6.3-543-0d4d6a64dd-ice36.jar
08:24:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-0d4d6a64dd-ice36/omero_client-5.6.3-543-0d4d6a64dd-ice36.xml
08:24:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:0808:24:08retrieve:
08:24:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:24:0808:24:08dist:
08:24:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:24:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:24:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:24:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:24:08Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:24:08Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
08:24:08Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:24:08Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:24:08Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:24:0808:24:08copy-licenses:
08:24:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:24:08Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:24:08Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:24:0908:24:09copy-history:
08:24:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:24:0908:24:09copy-etc:
08:24:09Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:24:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:24:0908:24:09copy-sql:
08:24:09Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:24:1708:24:17copy-server:
08:24:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:24:1708:24:17copy-client:
08:24:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:24:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:24:1908:24:19update-version:
08:24:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:24:1908:24:19create-workdirs:
08:24:19Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:24:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:24:1908:24:19copy-luts:
08:24:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:24:19Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:24:1908:24:19test-compile:
08:24:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:24:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:24:2008:24:20testng-init:
08:24:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:2408:24:23,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
08:24:2408:24:23,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - No custom configurators were discovered as a service.
08:24:2408:24:23,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:24:2408:24:23,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:24:2408:24:23,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:24:2408:24:23,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:24:2408:24:23,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:24:2408:24:23,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:24:2408:24:23,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:24:2408:24:23,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:24:2408:24:23,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:24:2408:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs multiple times on the classpath.
08:24:2408:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:24:2408:24:23,999 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70915da3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:24:2408:24:24,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:24:2408:24:24,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:24:2408:24:24,219 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:24:2408:24:24,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:24:2408:24:24,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - Please move "immediateFlush" property into the enclosing appender.
08:24:2408:24:24,283 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@66fd7b2 - Setting the "immediateFlush" property of the enclosing appender to true
08:24:2408:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:24:2408:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:24:2408:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:24:2408:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:24:2408:24:24,284 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:24:2408:24:24,285 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:24:2408:24:24,286 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@658ec00c - End of configuration.
08:24:2408:24:24,288 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3565ee15 - Registering current configuration as safe fallback point
08:24:2408:24:24,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@603601a1 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:24:2408:24:24lifecycle.test-compile:
08:24:24Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:24:24Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:24:24warning: [options] bootstrap class path not set in conjunction with -source 8
08:24:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:28import omero.grid.RawAccessRequest;
08:24:28 ^
08:24:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:28import omero.grid.RawAccessRequest;
08:24:28 ^
08:24:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:28import omero.grid.RawAccessRequest;
08:24:28 ^
08:24:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:28import omero.model.ImportJob;
08:24:28 ^
08:24:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:24:28import omero.model.ImportJobI;
08:24:28 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:24:29 IObject link = (IObject) linkClass.newInstance();
08:24:29 ^
08:24:29 where T is a type-variable:
08:24:29 T extends Object declared in class Class
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:24:29 T copy = (T) obj.getClass().newInstance();
08:24:29 ^
08:24:29 where T is a type-variable:
08:24:29 T extends Object declared in class Class
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:29 RawAccessRequest raw = new RawAccessRequest();
08:24:29 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:29 RawAccessRequest raw = new RawAccessRequest();
08:24:29 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:24:29 raw.repoUuid = legacy.root().getHash().getValue();
08:24:29 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:24:29 raw.command = "rm";
08:24:29 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:24:29 raw.args = Arrays.asList(path);
08:24:29 ^
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:24:29 final IObject link = linkClass.newInstance();
08:24:29 ^
08:24:29 where T is a type-variable:
08:24:29 T extends Object declared in class Class
08:24:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:24:29 originalLink.setChild(annotationClass.newInstance());
08:24:29 ^
08:24:29 where T is a type-variable:
08:24:29 T extends Object declared in class Class
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:24:30 RoiResult r = svc.findByImage(id, new RoiOptions());
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:30 final RawAccessRequest request = new RawAccessRequest();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:30 final RawAccessRequest request = new RawAccessRequest();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:24:30 request.repoUuid = repo.root().getHash().getValue();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:24:30 request.command = "exists";
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:24:30 request.args = Collections.singletonList(dirPath);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:30 final RawAccessRequest request = new RawAccessRequest();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:24:30 final RawAccessRequest request = new RawAccessRequest();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:24:30 request.repoUuid = repo.root().getHash().getValue();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:24:30 request.command = "exists";
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:24:30 request.args = Collections.singletonList(dirName);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:30 final ImportJob importJob = new ImportJobI();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:24:30 final ImportJob importJob = new ImportJobI();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:24:30 importJob.setImageName(omero.rtypes.rstring(name));
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:24:30 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:24:30 final String savedName = sent.getImageName().getValue().toString();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:24:30 final String savedDesc = sent.getImageDescription().getValue().toString();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:24:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:24:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:24:30 ^
08:24:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:24:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:24:30 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 RoiResult r = svc.findByImage(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:24:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:24:31 table = svc.getTable(f.getId().getValue());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 RoiResult r = svc.findByImage(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:24:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:24:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:24:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:24:31 svc.getShapeStatsRestricted(
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:24:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:24:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:24:31 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:24:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:24:31 request.typesToIgnore = Collections.singletonList("Annotation");
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:24:31 request.typesToIgnore = Collections.singletonList("Annotation");
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:24:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:24:31 p2.setRelatedTo(p1);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:24:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:24:31 pixels1.setRelatedTo(pixels2);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:24:31 Pixels pixels = pixels1.getRelatedTo();
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:24:31 Assert.assertNull(pixels1.getRelatedTo());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:24:31 pixels1.setRelatedTo(pixels2);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:24:31 Pixels pixels = pixels1.getRelatedTo();
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:24:31 Assert.assertNull(pixels1.getRelatedTo());
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:24:31 ^
08:24:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:24:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:24:31 ^
08:24:31Note: Some input files use unchecked or unsafe operations.
08:24:31Note: Recompile with -Xlint:unchecked for details.
08:24:3188 warnings
08:24:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_792502391.tmp
08:24:31Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:24:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:31:: delivering :: omero#OmeroJava-test;working@0ac93bfd5614 :: 5.6.3-543-0d4d6a64dd-ice36 :: integration :: Mon Mar 10 08:24:20 UTC 2025
08:24:31 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:24:31:: publishing :: omero#OmeroJava-test
08:24:31 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-0d4d6a64dd-ice36.jar
08:24:31 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-0d4d6a64dd-ice36.xml
08:24:3108:24:31build-eclipse:
08:24:31No sub-builds to iterate on
08:24:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:24:3208:24:32retrieve:
08:24:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:3408:24:34prepare:
08:24:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:24:3508:24:35release-clients:
08:24:35Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-543-0d4d6a64dd-ice36.zip
08:24:4208:24:42release-zip:
08:24:42Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-543-0d4d6a64dd-ice36.zip
08:24:5508:24:55BUILD SUCCESSFUL
08:24:55Total time: 2 minutes 36 seconds
08:24:55++ '[' -d .git ']'
08:24:55++ python3 ./build.py release-src
08:24:55OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:24:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:24:5508:24:55release-src-git:
08:24:55Releasing openmicroscopy-5.6.3-543-0d4d6a64dd-ice36
08:24:58 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-0d4d6a64dd-ice36.zip
08:24:58 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-0d4d6a64dd-ice36-base.zip
08:25:0008:25:00BUILD SUCCESSFUL
08:25:00Total time: 4 seconds
08:25:00++ echo BUILD_NUMBER=342
08:25:00++ echo OMERO_BRANCH=merge_ci
08:25:00++ git_info
08:25:00+++ git rev-parse HEAD
08:25:00++ HEAD=0d4d6a64ddafe95abb5a0e181a59b83f73145144
08:25:00++ git log --max-count=1 0d4d6a64ddafe95abb5a0e181a59b83f73145144
08:25:00++ env
08:25:00++ sort
08:25:00Archiving artifacts
08:25:27Finished: SUCCESS
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