22:40:25Started by upstream project "Trigger" build number 40822:40:25originally caused by:
22:40:25 Started by timer
22:40:25Running as SYSTEM
22:40:25Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
22:40:25The recommended git tool is: NONE
22:40:25No credentials specified
22:40:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
22:40:25Fetching changes from the remote Git repository
22:40:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
22:40:25Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git22:40:25 > git --version # timeout=10
22:40:25 > git --version # 'git version 2.43.5'
22:40:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
22:40:27 > git rev-parse origin/merge_ci^{commit} # timeout=10
22:40:27Checking out Revision 7a6303b7e095b3edaaa1f2ab6975efed8cceab32 (origin/merge_ci)
22:40:27 > git config core.sparsecheckout # timeout=10
22:40:27 > git checkout -f 7a6303b7e095b3edaaa1f2ab6975efed8cceab32 # timeout=10
22:40:27Commit message: "Add version.properties to etc/omero.properties"
22:40:27 > git rev-list --no-walk 0c98bcfbc1c1fa765191223c949c994aee3dc8e4 # timeout=10
22:40:27Cleaning workspace
22:40:27 > git rev-parse --verify HEAD # timeout=10
22:40:27Resetting working tree
22:40:27 > git reset --hard # timeout=10
22:40:27 > git clean -fdx # timeout=10
22:40:28Copied 6 artifacts from "OMERO-python-superbuild-build" build number 34422:40:29[OMERO-build] $ /bin/bash -xe /tmp/jenkins14240564377930823633.sh
22:40:29+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
22:40:29+ cd src
22:40:29+ export OMERO_BRANCH=merge_ci
22:40:29+ OMERO_BRANCH=merge_ci
22:40:29+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
22:40:29+ source /home/omero/settings.env
22:40:29++ OMERO_DB_HOST=pg
22:40:29++ OMERO_DB_USER=postgres
22:40:29++ OMERO_DB_PASS=
22:40:29++ OMERO_ROOT_PASS=omero
22:40:29++ OMERO_DATA_DIR=/OMERO
22:40:29++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
22:40:29+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
22:40:34+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl22:40:35Collecting zeroc-ice==3.6.5
22:40:36 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
22:40:38WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
22:40:38You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
22:40:38+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
22:40:38Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.3)
22:40:39Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
22:40:39Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
22:40:39Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
22:40:39Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
22:40:39Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
22:40:39Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
22:40:39Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
22:40:39Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
22:40:39Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
22:40:39Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
22:40:39Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
22:40:39Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
22:40:39Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
22:40:39WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
22:40:39You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
22:40:39+ source docs/hudson/OMERO.sh
22:40:39++ set -e
22:40:39++ set -u
22:40:39++ set -x
22:40:39++ source docs/hudson/functions.sh
22:40:39++ echo Building merge_ci
22:40:39Building merge_ci
22:40:39++ python3 ./build.py build-dev release-all
22:40:39OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
22:40:39Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
22:40:4022:40:40check-ivy:
22:40:40Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
22:40:40Created dir: /home/omero/workspace/OMERO-build/src/target
22:40:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:40:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:40:4122:40:41build-scons:
22:40:41Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
22:40:41No sub-builds to iterate on
22:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools...
22:40:4222:40:42buildlist:
22:40:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:40:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:40:4222:40:42clean:
22:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:40:4222:40:42python-clean:
22:40:42WARNING: '' not a valid package name; please use only .-separated package names in setup.py
22:40:42/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
22:40:42 warnings.warn(
22:40:42running clean
22:40:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
22:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
22:40:4322:40:43python-clean:
22:40:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
22:40:43/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
22:40:43 warnings.warn(
22:40:43running clean
22:40:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:40:4322:40:43python-clean:
22:40:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
22:40:43/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-7a6303b7e0-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
22:40:43 warnings.warn(
22:40:43running clean
22:40:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
22:40:43Deleting directory /home/omero/workspace/OMERO-build/src/target
22:40:4322:40:43build-scons:
22:40:43Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
22:40:4322:40:43build:
22:40:43No sub-builds to iterate on
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
22:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
22:40:4322:40:43tools-init:
22:40:43no-op
22:40:4322:40:43retrieve:
22:40:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:40:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:40:44WARNING: An illegal reflective access operation has occurred
22:40:44WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
22:40:44WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
22:40:44WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
22:40:44WARNING: All illegal access operations will be denied in a future release
22:41:2622:41:26prepare:
22:41:26Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
22:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
22:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
22:41:2622:41:26pre-compile:
22:41:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
22:41:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
22:41:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
22:41:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
22:41:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
22:41:2622:41:26compile:
22:41:26no-op
22:41:2622:41:26package:
22:41:26Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
22:41:2622:41:26install:
22:41:26:: delivering :: omero#omero_client;working@14ce195d4b91 :: 5.6.3-548-7a6303b7e0-ice36 :: integration :: Thu Mar 20 22:40:43 UTC 2025
22:41:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
22:41:26:: publishing :: omero#omero_client
22:41:27 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-7a6303b7e0-ice36/omero_client-5.6.3-548-7a6303b7e0-ice36.jar
22:41:27 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-7a6303b7e0-ice36/omero_client-5.6.3-548-7a6303b7e0-ice36.xml
22:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:41:2722:41:27retrieve:
22:41:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:41:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools...
22:41:2722:41:27dist:
22:41:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
22:41:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
22:41:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
22:41:27Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
22:41:27Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
22:41:27Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
22:41:27Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
22:41:27Entering /home/omero/workspace/OMERO-build/src/components/tests...
22:41:27Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
22:41:2822:41:28copy-licenses:
22:41:28Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
22:41:28Created dir: /home/omero/workspace/OMERO-build/src/dist/share
22:41:28Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
22:41:2822:41:28copy-history:
22:41:28Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
22:41:2822:41:28copy-etc:
22:41:28Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
22:41:28Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
22:41:2822:41:28copy-sql:
22:41:28Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
22:41:3622:41:36copy-server:
22:41:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
22:41:3722:41:37copy-client:
22:41:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
22:41:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
22:41:3822:41:38update-version:
22:41:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
22:41:3822:41:38create-workdirs:
22:41:38Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
22:41:38Created dir: /home/omero/workspace/OMERO-build/src/dist/var
22:41:3822:41:38copy-luts:
22:41:38Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
22:41:38Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
22:41:3822:41:38test-compile:
22:41:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
22:41:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
22:41:3822:41:38testng-init:
22:41:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:41:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:41:4322:41:42,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
22:41:4322:41:42,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - No custom configurators were discovered as a service.
22:41:4322:41:42,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
22:41:4322:41:42,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
22:41:4322:41:42,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
22:41:4322:41:42,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
22:41:4322:41:42,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
22:41:4322:41:42,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
22:41:4322:41:42,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
22:41:4322:41:42,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
22:41:4322:41:42,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
22:41:4322:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs multiple times on the classpath.
22:41:4322:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
22:41:4322:41:42,864 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
22:41:4322:41:43,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
22:41:4322:41:43,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
22:41:4322:41:43,091 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
22:41:4322:41:43,093 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
22:41:4322:41:43,093 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Please move "immediateFlush" property into the enclosing appender.
22:41:4322:41:43,155 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Setting the "immediateFlush" property of the enclosing appender to true
22:41:4322:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
22:41:4322:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
22:41:4322:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
22:41:4322:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
22:41:4322:41:43,156 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
22:41:4322:41:43,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
22:41:4322:41:43,157 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2896e105 - End of configuration.
22:41:4322:41:43,160 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7c76d466 - Registering current configuration as safe fallback point
22:41:4322:41:43,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
22:41:4322:41:43lifecycle.test-compile:
22:41:43Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
22:41:43Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
22:41:43warning: [options] bootstrap class path not set in conjunction with -source 8
22:41:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:45import omero.grid.RawAccessRequest;
22:41:45 ^
22:41:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:45import omero.grid.RawAccessRequest;
22:41:45 ^
22:41:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:45import omero.grid.RawAccessRequest;
22:41:45 ^
22:41:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:45import omero.model.ImportJob;
22:41:45 ^
22:41:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
22:41:45import omero.model.ImportJobI;
22:41:45 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
22:41:46 IObject link = (IObject) linkClass.newInstance();
22:41:46 ^
22:41:46 where T is a type-variable:
22:41:46 T extends Object declared in class Class
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
22:41:46 T copy = (T) obj.getClass().newInstance();
22:41:46 ^
22:41:46 where T is a type-variable:
22:41:46 T extends Object declared in class Class
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:46 RawAccessRequest raw = new RawAccessRequest();
22:41:46 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:46 RawAccessRequest raw = new RawAccessRequest();
22:41:46 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
22:41:46 raw.repoUuid = legacy.root().getHash().getValue();
22:41:46 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
22:41:46 raw.command = "rm";
22:41:46 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
22:41:46 raw.args = Arrays.asList(path);
22:41:46 ^
22:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
22:41:46 final IObject link = linkClass.newInstance();
22:41:46 ^
22:41:46 where T is a type-variable:
22:41:46 T extends Object declared in class Class
22:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
22:41:47 originalLink.setChild(annotationClass.newInstance());
22:41:47 ^
22:41:47 where T is a type-variable:
22:41:47 T extends Object declared in class Class
22:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
22:41:47 RoiResult r = svc.findByImage(id, new RoiOptions());
22:41:47 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:48 final RawAccessRequest request = new RawAccessRequest();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:48 final RawAccessRequest request = new RawAccessRequest();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
22:41:48 request.repoUuid = repo.root().getHash().getValue();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
22:41:48 request.command = "exists";
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
22:41:48 request.args = Collections.singletonList(dirPath);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:48 final RawAccessRequest request = new RawAccessRequest();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
22:41:48 final RawAccessRequest request = new RawAccessRequest();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
22:41:48 request.repoUuid = repo.root().getHash().getValue();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
22:41:48 request.command = "exists";
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
22:41:48 request.args = Collections.singletonList(dirName);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:48 final ImportJob importJob = new ImportJobI();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
22:41:48 final ImportJob importJob = new ImportJobI();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
22:41:48 importJob.setImageName(omero.rtypes.rstring(name));
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
22:41:48 importJob.setImageDescription(omero.rtypes.rstring(desc));
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
22:41:48 final String savedName = sent.getImageName().getValue().toString();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
22:41:48 final String savedDesc = sent.getImageDescription().getValue().toString();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
22:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
22:41:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
22:41:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 RoiResult r = svc.findByImage(image.getId().getValue(),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
22:41:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
22:41:48 table = svc.getTable(f.getId().getValue());
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 RoiResult r = svc.findByImage(image.getId().getValue(),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
22:41:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
22:41:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
22:41:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
22:41:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
22:41:48 svc.getShapeStatsRestricted(
22:41:48 ^
22:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
22:41:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
22:41:48 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
22:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
22:41:49 request.typesToIgnore = Collections.singletonList("TagAnnotation");
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
22:41:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
22:41:49 request.typesToIgnore = Collections.singletonList("Annotation");
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
22:41:49 request.typesToIgnore = Collections.singletonList("Annotation");
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
22:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
22:41:49 p2.setRelatedTo(p1);
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
22:41:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
22:41:49 pixels1.setRelatedTo(pixels2);
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
22:41:49 Pixels pixels = pixels1.getRelatedTo();
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
22:41:49 Assert.assertNull(pixels1.getRelatedTo());
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
22:41:49 pixels1.setRelatedTo(pixels2);
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
22:41:49 Pixels pixels = pixels1.getRelatedTo();
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
22:41:49 Assert.assertNull(pixels1.getRelatedTo());
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
22:41:49 ^
22:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
22:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
22:41:49 ^
22:41:49Note: Some input files use unchecked or unsafe operations.
22:41:49Note: Recompile with -Xlint:unchecked for details.
22:41:4988 warnings
22:41:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_121348555.tmp
22:41:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
22:41:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:41:49:: delivering :: omero#OmeroJava-test;working@14ce195d4b91 :: 5.6.3-548-7a6303b7e0-ice36 :: integration :: Thu Mar 20 22:41:38 UTC 2025
22:41:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
22:41:49:: publishing :: omero#OmeroJava-test
22:41:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-7a6303b7e0-ice36.jar
22:41:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-7a6303b7e0-ice36.xml
22:41:4922:41:49build-eclipse:
22:41:49No sub-builds to iterate on
22:41:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
22:41:5022:41:50retrieve:
22:41:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
22:41:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
22:41:5222:41:52prepare:
22:41:52Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
22:41:5322:41:53release-clients:
22:41:53Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-7a6303b7e0-ice36.zip
22:41:5922:41:59release-zip:
22:41:59Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-7a6303b7e0-ice36.zip
22:42:1122:42:11BUILD SUCCESSFUL
22:42:11Total time: 1 minute 31 seconds
22:42:11++ '[' -d .git ']'
22:42:11++ python3 ./build.py release-src
22:42:11OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
22:42:11Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
22:42:1122:42:11release-src-git:
22:42:11Releasing openmicroscopy-5.6.3-548-7a6303b7e0-ice36
22:42:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-7a6303b7e0-ice36.zip
22:42:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-7a6303b7e0-ice36-base.zip
22:42:1422:42:14BUILD SUCCESSFUL
22:42:14Total time: 3 seconds
22:42:14++ echo BUILD_NUMBER=348
22:42:14++ echo OMERO_BRANCH=merge_ci
22:42:14++ git_info
22:42:14+++ git rev-parse HEAD
22:42:14++ HEAD=7a6303b7e095b3edaaa1f2ab6975efed8cceab32
22:42:14++ git log --max-count=1 7a6303b7e095b3edaaa1f2ab6975efed8cceab32
22:42:14++ env
22:42:14++ sort
22:42:15Archiving artifacts
22:42:44Finished: SUCCESS
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