14:38:47Started by upstream project "Trigger" build number 40714:38:47originally caused by:
14:38:47 Started by user devspace14:38:47Running as SYSTEM
14:38:47Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:38:47The recommended git tool is: NONE
14:38:47No credentials specified
14:38:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:38:47Fetching changes from the remote Git repository
14:38:47 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:38:47Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git14:38:47 > git --version # timeout=10
14:38:47 > git --version # 'git version 2.43.5'
14:38:47 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:38:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
14:38:49Checking out Revision 0c98bcfbc1c1fa765191223c949c994aee3dc8e4 (origin/merge_ci)
14:38:49 > git config core.sparsecheckout # timeout=10
14:38:49 > git checkout -f 0c98bcfbc1c1fa765191223c949c994aee3dc8e4 # timeout=10
14:38:49Commit message: "Add version.properties to etc/omero.properties"
14:38:49 > git rev-list --no-walk 1677ee6b231ee293d673ed7380c9d11e6799c834 # timeout=10
14:38:49Cleaning workspace
14:38:49 > git rev-parse --verify HEAD # timeout=10
14:38:49Resetting working tree
14:38:49 > git reset --hard # timeout=10
14:38:49 > git clean -fdx # timeout=10
14:38:50Copied 6 artifacts from "OMERO-python-superbuild-build" build number 34314:38:50[OMERO-build] $ /bin/bash -xe /tmp/jenkins17623268369648170585.sh
14:38:50+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
14:38:50+ cd src
14:38:50+ export OMERO_BRANCH=merge_ci
14:38:50+ OMERO_BRANCH=merge_ci
14:38:50+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:38:50+ source /home/omero/settings.env
14:38:50++ OMERO_DB_HOST=pg
14:38:50++ OMERO_DB_USER=postgres
14:38:50++ OMERO_DB_PASS=
14:38:50++ OMERO_ROOT_PASS=omero
14:38:50++ OMERO_DATA_DIR=/OMERO
14:38:50++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:38:50+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:38:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl14:38:52Collecting zeroc-ice==3.6.5
14:38:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
14:38:57WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
14:38:57You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
14:38:57+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
14:38:57Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.1)
14:38:58Collecting setuptools
14:38:58 Downloading setuptools-77.0.3-py3-none-any.whl (1.3 MB)
14:38:58Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
14:38:58Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
14:38:58Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
14:38:58Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
14:38:58Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
14:38:58Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
14:38:58Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
14:38:58Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
14:38:58Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
14:38:58Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
14:38:59Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
14:38:59Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
14:38:59Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
14:38:59Installing collected packages: setuptools
14:38:59 Attempting uninstall: setuptools
14:38:59 Found existing installation: setuptools 77.0.1
14:38:59 Uninstalling setuptools-77.0.1:
14:38:59 Successfully uninstalled setuptools-77.0.1
14:39:00Successfully installed setuptools-77.0.3
14:39:00WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
14:39:00You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
14:39:00+ source docs/hudson/OMERO.sh
14:39:00++ set -e
14:39:00++ set -u
14:39:00++ set -x
14:39:00++ source docs/hudson/functions.sh
14:39:00++ echo Building merge_ci
14:39:00Building merge_ci
14:39:00++ python3 ./build.py build-dev release-all
14:39:00OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:39:00Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:39:0114:39:01check-ivy:
14:39:01Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:39:01Created dir: /home/omero/workspace/OMERO-build/src/target
14:39:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:0114:39:01build-scons:
14:39:01Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:39:01No sub-builds to iterate on
14:39:01Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:39:0214:39:02buildlist:
14:39:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:0214:39:02clean:
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:0214:39:02python-clean:
14:39:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:39:02/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-0c98bcfbc1-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:39:02 warnings.warn(
14:39:02running clean
14:39:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:39:0214:39:02python-clean:
14:39:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:39:02/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-0c98bcfbc1-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:39:02 warnings.warn(
14:39:02running clean
14:39:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:0214:39:02python-clean:
14:39:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:39:02/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-0c98bcfbc1-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:39:02 warnings.warn(
14:39:02running clean
14:39:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:39:02Deleting directory /home/omero/workspace/OMERO-build/src/target
14:39:0314:39:03build-scons:
14:39:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:39:0314:39:03build:
14:39:03No sub-builds to iterate on
14:39:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:39:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:39:0314:39:03tools-init:
14:39:03no-op
14:39:0314:39:03retrieve:
14:39:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:03WARNING: An illegal reflective access operation has occurred
14:39:03WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
14:39:03WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
14:39:03WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
14:39:03WARNING: All illegal access operations will be denied in a future release
14:39:3014:39:30prepare:
14:39:30Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:39:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:39:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:39:3014:39:30pre-compile:
14:39:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:39:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:39:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:39:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:39:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:39:3014:39:30compile:
14:39:30no-op
14:39:3014:39:30package:
14:39:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
14:39:3014:39:30install:
14:39:30:: delivering :: omero#omero_client;working@c45efe60dfd1 :: 5.6.3-548-0c98bcfbc1-ice36 :: integration :: Thu Mar 20 14:39:03 UTC 2025
14:39:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
14:39:30:: publishing :: omero#omero_client
14:39:30 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-0c98bcfbc1-ice36/omero_client-5.6.3-548-0c98bcfbc1-ice36.jar
14:39:30 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-0c98bcfbc1-ice36/omero_client-5.6.3-548-0c98bcfbc1-ice36.xml
14:39:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:3114:39:31retrieve:
14:39:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:39:3114:39:31dist:
14:39:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
14:39:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
14:39:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:39:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:39:31Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
14:39:31Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
14:39:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
14:39:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
14:39:31Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:39:3114:39:31copy-licenses:
14:39:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:39:31Created dir: /home/omero/workspace/OMERO-build/src/dist/share
14:39:31Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
14:39:3114:39:31copy-history:
14:39:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:39:3114:39:31copy-etc:
14:39:31Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
14:39:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
14:39:3114:39:31copy-sql:
14:39:31Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
14:39:3614:39:36copy-server:
14:39:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
14:39:3614:39:36copy-client:
14:39:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
14:39:37 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
14:39:3714:39:37update-version:
14:39:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
14:39:3714:39:37create-workdirs:
14:39:37Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
14:39:37Created dir: /home/omero/workspace/OMERO-build/src/dist/var
14:39:3714:39:37copy-luts:
14:39:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:39:37Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:39:3714:39:37test-compile:
14:39:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:39:3714:39:37testng-init:
14:39:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:4014:39:40,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
14:39:4014:39:40,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - No custom configurators were discovered as a service.
14:39:4014:39:40,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
14:39:4014:39:40,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
14:39:4014:39:40,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
14:39:4014:39:40,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
14:39:4014:39:40,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
14:39:4014:39:40,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
14:39:4014:39:40,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
14:39:4014:39:40,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
14:39:4014:39:40,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:39:4014:39:40,401 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2896e105 - Resource [logback.xml] occurs multiple times on the classpath.
14:39:4014:39:40,401 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2896e105 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:39:4014:39:40,401 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2896e105 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
14:39:4014:39:40,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
14:39:4014:39:40,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
14:39:4014:39:40,616 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
14:39:4014:39:40,618 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c76d466 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
14:39:4014:39:40,618 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c76d466 - Please move "immediateFlush" property into the enclosing appender.
14:39:4014:39:40,678 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c76d466 - Setting the "immediateFlush" property of the enclosing appender to true
14:39:4014:39:40,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
14:39:4014:39:40,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
14:39:4014:39:40,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
14:39:4014:39:40,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
14:39:4014:39:40,679 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
14:39:4014:39:40,679 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
14:39:4014:39:40,680 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5748ffe3 - End of configuration.
14:39:4014:39:40,682 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3528740f - Registering current configuration as safe fallback point
14:39:4014:39:40,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@179eb386 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
14:39:4014:39:40lifecycle.test-compile:
14:39:40Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:39:40Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:39:41warning: [options] bootstrap class path not set in conjunction with -source 8
14:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:42import omero.grid.RawAccessRequest;
14:39:42 ^
14:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:42import omero.grid.RawAccessRequest;
14:39:42 ^
14:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:42import omero.grid.RawAccessRequest;
14:39:42 ^
14:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:42import omero.model.ImportJob;
14:39:42 ^
14:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:39:42import omero.model.ImportJobI;
14:39:42 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
14:39:43 IObject link = (IObject) linkClass.newInstance();
14:39:43 ^
14:39:43 where T is a type-variable:
14:39:43 T extends Object declared in class Class
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
14:39:43 T copy = (T) obj.getClass().newInstance();
14:39:43 ^
14:39:43 where T is a type-variable:
14:39:43 T extends Object declared in class Class
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:43 RawAccessRequest raw = new RawAccessRequest();
14:39:43 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:43 RawAccessRequest raw = new RawAccessRequest();
14:39:43 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:39:43 raw.repoUuid = legacy.root().getHash().getValue();
14:39:43 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
14:39:43 raw.command = "rm";
14:39:43 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
14:39:43 raw.args = Arrays.asList(path);
14:39:43 ^
14:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
14:39:43 final IObject link = linkClass.newInstance();
14:39:43 ^
14:39:43 where T is a type-variable:
14:39:43 T extends Object declared in class Class
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
14:39:44 originalLink.setChild(annotationClass.newInstance());
14:39:44 ^
14:39:44 where T is a type-variable:
14:39:44 T extends Object declared in class Class
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:39:44 RoiResult r = svc.findByImage(id, new RoiOptions());
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:44 final RawAccessRequest request = new RawAccessRequest();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:44 final RawAccessRequest request = new RawAccessRequest();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:39:44 request.repoUuid = repo.root().getHash().getValue();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
14:39:44 request.command = "exists";
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
14:39:44 request.args = Collections.singletonList(dirPath);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:44 final RawAccessRequest request = new RawAccessRequest();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:39:44 final RawAccessRequest request = new RawAccessRequest();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:39:44 request.repoUuid = repo.root().getHash().getValue();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
14:39:44 request.command = "exists";
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
14:39:44 request.args = Collections.singletonList(dirName);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:44 final ImportJob importJob = new ImportJobI();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:39:44 final ImportJob importJob = new ImportJobI();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
14:39:44 importJob.setImageName(omero.rtypes.rstring(name));
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
14:39:44 importJob.setImageDescription(omero.rtypes.rstring(desc));
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:44 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:44 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:39:44 final String savedName = sent.getImageName().getValue().toString();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:39:44 final String savedDesc = sent.getImageDescription().getValue().toString();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:44 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:39:44 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:39:44 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
14:39:44 ^
14:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:39:44 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
14:39:44 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 RoiResult r = svc.findByImage(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
14:39:45 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
14:39:45 table = svc.getTable(f.getId().getValue());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 RoiResult r = svc.findByImage(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:39:45 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:39:45 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
14:39:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:39:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:39:45 svc.getShapeStatsRestricted(
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:39:45 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:39:45 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:39:45 request.typesToIgnore = Collections.singletonList("TagAnnotation");
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:39:45 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:39:45 request.typesToIgnore = Collections.singletonList("Annotation");
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:39:45 request.typesToIgnore = Collections.singletonList("Annotation");
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:39:45 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:39:45 p2.setRelatedTo(p1);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:39:45 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:39:45 pixels1.setRelatedTo(pixels2);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:39:45 Pixels pixels = pixels1.getRelatedTo();
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:39:45 Assert.assertNull(pixels1.getRelatedTo());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:39:45 pixels1.setRelatedTo(pixels2);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:39:45 Pixels pixels = pixels1.getRelatedTo();
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:39:45 Assert.assertNull(pixels1.getRelatedTo());
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:39:45 ^
14:39:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:39:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:39:45 ^
14:39:45Note: Some input files use unchecked or unsafe operations.
14:39:45Note: Recompile with -Xlint:unchecked for details.
14:39:4588 warnings
14:39:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_893154996.tmp
14:39:45Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
14:39:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:45:: delivering :: omero#OmeroJava-test;working@c45efe60dfd1 :: 5.6.3-548-0c98bcfbc1-ice36 :: integration :: Thu Mar 20 14:39:37 UTC 2025
14:39:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
14:39:45:: publishing :: omero#OmeroJava-test
14:39:45 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-0c98bcfbc1-ice36.jar
14:39:45 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-0c98bcfbc1-ice36.xml
14:39:4514:39:45build-eclipse:
14:39:45No sub-builds to iterate on
14:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:39:4614:39:46retrieve:
14:39:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:39:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:39:4814:39:48prepare:
14:39:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:39:5014:39:50release-clients:
14:39:50Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-0c98bcfbc1-ice36.zip
14:39:5514:39:55release-zip:
14:39:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-0c98bcfbc1-ice36.zip
14:40:0714:40:07BUILD SUCCESSFUL
14:40:07Total time: 1 minute 7 seconds
14:40:07++ '[' -d .git ']'
14:40:07++ python3 ./build.py release-src
14:40:07OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:40:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:40:0814:40:08release-src-git:
14:40:08Releasing openmicroscopy-5.6.3-548-0c98bcfbc1-ice36
14:40:09 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-0c98bcfbc1-ice36.zip
14:40:09 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-0c98bcfbc1-ice36-base.zip
14:40:1014:40:10BUILD SUCCESSFUL
14:40:10Total time: 3 seconds
14:40:10++ echo BUILD_NUMBER=347
14:40:10++ echo OMERO_BRANCH=merge_ci
14:40:10++ git_info
14:40:10+++ git rev-parse HEAD
14:40:11++ HEAD=0c98bcfbc1c1fa765191223c949c994aee3dc8e4
14:40:11++ git log --max-count=1 0c98bcfbc1c1fa765191223c949c994aee3dc8e4
14:40:11++ env
14:40:11++ sort
14:40:11Archiving artifacts
14:40:37Finished: SUCCESS
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