12:31:59Started by user devspace12:31:59Running as SYSTEM
12:31:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:31:59The recommended git tool is: NONE
12:31:59No credentials specified
12:31:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:31:59Fetching changes from the remote Git repository
12:31:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:31:59Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git12:31:59 > git --version # timeout=10
12:31:59 > git --version # 'git version 2.43.5'
12:31:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:32:00 > git rev-parse origin/merge_ci^{commit} # timeout=10
12:32:00Checking out Revision 1677ee6b231ee293d673ed7380c9d11e6799c834 (origin/merge_ci)
12:32:00 > git config core.sparsecheckout # timeout=10
12:32:00 > git checkout -f 1677ee6b231ee293d673ed7380c9d11e6799c834 # timeout=10
12:32:00Commit message: "Add version.properties to etc/omero.properties"
12:32:00 > git rev-list --no-walk 1677ee6b231ee293d673ed7380c9d11e6799c834 # timeout=10
12:32:00Cleaning workspace
12:32:00 > git rev-parse --verify HEAD # timeout=10
12:32:00Resetting working tree
12:32:00 > git reset --hard # timeout=10
12:32:00 > git clean -fdx # timeout=10
12:32:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 34112:32:01[OMERO-build] $ /bin/bash -xe /tmp/jenkins12164706516764912112.sh
12:32:01+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
12:32:01+ cd src
12:32:01+ export OMERO_BRANCH=merge_ci
12:32:01+ OMERO_BRANCH=merge_ci
12:32:01+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:32:01+ source /home/omero/settings.env
12:32:01++ OMERO_DB_HOST=pg
12:32:01++ OMERO_DB_USER=postgres
12:32:01++ OMERO_DB_PASS=
12:32:01++ OMERO_ROOT_PASS=omero
12:32:01++ OMERO_DATA_DIR=/OMERO
12:32:01++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:32:01+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:32:02+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl12:32:03Collecting zeroc-ice==3.6.5
12:32:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
12:32:05WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
12:32:05You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
12:32:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
12:32:05Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (77.0.1)
12:32:06Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6)
12:32:06Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
12:32:06Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
12:32:06Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
12:32:06Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
12:32:06Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
12:32:06Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
12:32:06Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
12:32:06Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
12:32:06Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
12:32:06Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
12:32:06Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
12:32:06Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
12:32:06WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available.
12:32:06You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
12:32:06+ source docs/hudson/OMERO.sh
12:32:06++ set -e
12:32:06++ set -u
12:32:06++ set -x
12:32:06++ source docs/hudson/functions.sh
12:32:06++ echo Building merge_ci
12:32:06Building merge_ci
12:32:06++ python3 ./build.py build-dev release-all
12:32:06OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
12:32:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:32:0712:32:07check-ivy:
12:32:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:32:07Created dir: /home/omero/workspace/OMERO-build/src/target
12:32:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:0812:32:08build-scons:
12:32:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:32:08No sub-builds to iterate on
12:32:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:32:0812:32:08buildlist:
12:32:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:0812:32:08clean:
12:32:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:0812:32:08python-clean:
12:32:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:32:08/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-1677ee6b23-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:32:08 warnings.warn(
12:32:08running clean
12:32:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:32:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:32:0912:32:09python-clean:
12:32:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:32:09/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-1677ee6b23-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:32:09 warnings.warn(
12:32:09running clean
12:32:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:0912:32:09python-clean:
12:32:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:32:09/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-548-1677ee6b23-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:32:09 warnings.warn(
12:32:09running clean
12:32:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:32:09Deleting directory /home/omero/workspace/OMERO-build/src/target
12:32:0912:32:09build-scons:
12:32:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:32:0912:32:09build:
12:32:09No sub-builds to iterate on
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:32:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:32:0912:32:09tools-init:
12:32:09no-op
12:32:0912:32:09retrieve:
12:32:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:10WARNING: An illegal reflective access operation has occurred
12:32:10WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
12:32:10WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
12:32:10WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
12:32:10WARNING: All illegal access operations will be denied in a future release
12:32:3412:32:34prepare:
12:32:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:32:3412:32:34pre-compile:
12:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:32:3412:32:34compile:
12:32:34no-op
12:32:3412:32:34package:
12:32:34Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
12:32:3412:32:34install:
12:32:34:: delivering :: omero#omero_client;working@c9d3d64c1315 :: 5.6.3-548-1677ee6b23-ice36 :: integration :: Thu Mar 20 12:32:09 UTC 2025
12:32:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
12:32:34:: publishing :: omero#omero_client
12:32:34 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-1677ee6b23-ice36/omero_client-5.6.3-548-1677ee6b23-ice36.jar
12:32:34 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-548-1677ee6b23-ice36/omero_client-5.6.3-548-1677ee6b23-ice36.xml
12:32:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:3512:32:35retrieve:
12:32:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:32:3512:32:35dist:
12:32:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
12:32:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
12:32:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:32:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:32:35Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
12:32:35Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
12:32:35Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
12:32:35Entering /home/omero/workspace/OMERO-build/src/components/tests...
12:32:35Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:32:3512:32:35copy-licenses:
12:32:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:32:35Created dir: /home/omero/workspace/OMERO-build/src/dist/share
12:32:35Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
12:32:3512:32:35copy-history:
12:32:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:32:3512:32:35copy-etc:
12:32:35Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
12:32:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
12:32:3512:32:35copy-sql:
12:32:35Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:32:3912:32:39copy-server:
12:32:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
12:32:3912:32:39copy-client:
12:32:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:32:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
12:32:4112:32:41update-version:
12:32:41Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:32:4112:32:41create-workdirs:
12:32:41Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:32:41Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:32:4112:32:41copy-luts:
12:32:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:32:41Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:32:4112:32:41test-compile:
12:32:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:32:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:32:4112:32:41testng-init:
12:32:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:4412:32:44,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
12:32:4412:32:44,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - No custom configurators were discovered as a service.
12:32:4412:32:44,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:32:4412:32:44,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:32:4412:32:44,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:32:4412:32:44,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:32:4412:32:44,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:32:4412:32:44,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:32:4412:32:44,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:32:4412:32:44,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:32:4412:32:44,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:32:4412:32:44,124 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs multiple times on the classpath.
12:32:4412:32:44,124 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:32:4412:32:44,124 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4c1ce13a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:32:4412:32:44,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:32:4412:32:44,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:32:4412:32:44,346 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:32:4412:32:44,348 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:32:4412:32:44,348 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Please move "immediateFlush" property into the enclosing appender.
12:32:4412:32:44,410 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@179eb386 - Setting the "immediateFlush" property of the enclosing appender to true
12:32:4412:32:44,411 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:32:4412:32:44,411 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:32:4412:32:44,411 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:32:4412:32:44,411 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:32:4412:32:44,411 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:32:4412:32:44,411 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:32:4412:32:44,412 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2896e105 - End of configuration.
12:32:4412:32:44,414 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7c76d466 - Registering current configuration as safe fallback point
12:32:4412:32:44,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4dd32cf5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:32:4412:32:44lifecycle.test-compile:
12:32:44Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:32:44Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:32:44warning: [options] bootstrap class path not set in conjunction with -source 8
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:46import omero.grid.RawAccessRequest;
12:32:46 ^
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:46import omero.grid.RawAccessRequest;
12:32:46 ^
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:46import omero.grid.RawAccessRequest;
12:32:46 ^
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:46import omero.model.ImportJob;
12:32:46 ^
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:32:46import omero.model.ImportJobI;
12:32:46 ^
12:32:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:32:46 IObject link = (IObject) linkClass.newInstance();
12:32:46 ^
12:32:46 where T is a type-variable:
12:32:46 T extends Object declared in class Class
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:32:47 T copy = (T) obj.getClass().newInstance();
12:32:47 ^
12:32:47 where T is a type-variable:
12:32:47 T extends Object declared in class Class
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:47 RawAccessRequest raw = new RawAccessRequest();
12:32:47 ^
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:47 RawAccessRequest raw = new RawAccessRequest();
12:32:47 ^
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:32:47 raw.repoUuid = legacy.root().getHash().getValue();
12:32:47 ^
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:32:47 raw.command = "rm";
12:32:47 ^
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:32:47 raw.args = Arrays.asList(path);
12:32:47 ^
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:32:47 final IObject link = linkClass.newInstance();
12:32:47 ^
12:32:47 where T is a type-variable:
12:32:47 T extends Object declared in class Class
12:32:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:32:47 originalLink.setChild(annotationClass.newInstance());
12:32:47 ^
12:32:47 where T is a type-variable:
12:32:47 T extends Object declared in class Class
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 RoiResult r = svc.findByImage(id, new RoiOptions());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:48 final RawAccessRequest request = new RawAccessRequest();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:48 final RawAccessRequest request = new RawAccessRequest();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:32:48 request.repoUuid = repo.root().getHash().getValue();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:32:48 request.command = "exists";
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:32:48 request.args = Collections.singletonList(dirPath);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:48 final RawAccessRequest request = new RawAccessRequest();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:32:48 final RawAccessRequest request = new RawAccessRequest();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:32:48 request.repoUuid = repo.root().getHash().getValue();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:32:48 request.command = "exists";
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:32:48 request.args = Collections.singletonList(dirName);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:48 final ImportJob importJob = new ImportJobI();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:32:48 final ImportJob importJob = new ImportJobI();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:32:48 importJob.setImageName(omero.rtypes.rstring(name));
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:32:48 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:32:48 final String savedName = sent.getImageName().getValue().toString();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:32:48 final String savedDesc = sent.getImageDescription().getValue().toString();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:32:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:32:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:32:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 RoiResult r = svc.findByImage(image.getId().getValue(),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:32:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:32:48 table = svc.getTable(f.getId().getValue());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 RoiResult r = svc.findByImage(image.getId().getValue(),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:32:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:32:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:32:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
12:32:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
12:32:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:32:48 svc.getShapeStatsRestricted(
12:32:48 ^
12:32:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:32:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:32:48 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:32:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:32:49 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:32:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:32:49 request.typesToIgnore = Collections.singletonList("Annotation");
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:32:49 request.typesToIgnore = Collections.singletonList("Annotation");
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:32:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:32:49 p2.setRelatedTo(p1);
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:32:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:32:49 pixels1.setRelatedTo(pixels2);
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:32:49 Pixels pixels = pixels1.getRelatedTo();
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:32:49 Assert.assertNull(pixels1.getRelatedTo());
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:32:49 pixels1.setRelatedTo(pixels2);
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:32:49 Pixels pixels = pixels1.getRelatedTo();
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:32:49 Assert.assertNull(pixels1.getRelatedTo());
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:32:49 ^
12:32:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:32:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:32:49 ^
12:32:49Note: Some input files use unchecked or unsafe operations.
12:32:49Note: Recompile with -Xlint:unchecked for details.
12:32:4988 warnings
12:32:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1001661999.tmp
12:32:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:32:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:49:: delivering :: omero#OmeroJava-test;working@c9d3d64c1315 :: 5.6.3-548-1677ee6b23-ice36 :: integration :: Thu Mar 20 12:32:41 UTC 2025
12:32:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:32:49:: publishing :: omero#OmeroJava-test
12:32:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-1677ee6b23-ice36.jar
12:32:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-548-1677ee6b23-ice36.xml
12:32:4912:32:49build-eclipse:
12:32:49No sub-builds to iterate on
12:32:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:32:4912:32:49retrieve:
12:32:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:32:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:32:5212:32:52prepare:
12:32:52Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:32:5412:32:54release-clients:
12:32:54Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-548-1677ee6b23-ice36.zip
12:33:0012:33:00release-zip:
12:33:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
12:33:1212:33:12BUILD SUCCESSFUL
12:33:12Total time: 1 minute 5 seconds
12:33:12++ '[' -d .git ']'
12:33:12++ python3 ./build.py release-src
12:33:12OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
12:33:12Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:33:1212:33:12release-src-git:
12:33:12Releasing openmicroscopy-5.6.3-548-1677ee6b23-ice36
12:33:14 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-1677ee6b23-ice36.zip
12:33:14 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-548-1677ee6b23-ice36-base.zip
12:33:1512:33:15BUILD SUCCESSFUL
12:33:15Total time: 3 seconds
12:33:15++ echo BUILD_NUMBER=346
12:33:15++ echo OMERO_BRANCH=merge_ci
12:33:15++ git_info
12:33:15+++ git rev-parse HEAD
12:33:15++ HEAD=1677ee6b231ee293d673ed7380c9d11e6799c834
12:33:15++ git log --max-count=1 1677ee6b231ee293d673ed7380c9d11e6799c834
12:33:15++ env
12:33:15++ sort
12:33:15Archiving artifacts
12:33:43Finished: SUCCESS
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