09:46:16Started by upstream project "Trigger" build number 42309:46:16originally caused by:
09:46:16 Started by user devspace09:46:16Running as SYSTEM
09:46:16Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:46:16The recommended git tool is: NONE
09:46:16No credentials specified
09:46:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:46:16Fetching changes from the remote Git repository
09:46:16 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:46:16Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:46:16 > git --version # timeout=10
09:46:16 > git --version # 'git version 2.43.5'
09:46:16 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:46:18 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:46:18Checking out Revision 205da1defd5e90021300be16dbf03351254007d0 (origin/merge_ci)
09:46:18 > git config core.sparsecheckout # timeout=10
09:46:18 > git checkout -f 205da1defd5e90021300be16dbf03351254007d0 # timeout=10
09:46:18Commit message: "Add version.properties to etc/omero.properties"
09:46:18 > git rev-list --no-walk 563cb21b2c7dabff1af6a129a8c76b55a31c023c # timeout=10
09:46:18Cleaning workspace
09:46:18 > git rev-parse --verify HEAD # timeout=10
09:46:18Resetting working tree
09:46:18 > git reset --hard # timeout=10
09:46:18 > git clean -fdx # timeout=10
09:46:19Copied 6 artifacts from "OMERO-python-superbuild-build" build number 35709:46:19[OMERO-build] $ /bin/bash -xe /tmp/jenkins8099026262044248907.sh
09:46:19+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
09:46:19+ cd src
09:46:19+ export OMERO_BRANCH=merge_ci
09:46:19+ OMERO_BRANCH=merge_ci
09:46:19+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:46:19+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:46:19+ source /home/omero/settings.env
09:46:19++ OMERO_DB_HOST=pg
09:46:19++ OMERO_DB_USER=postgres
09:46:19++ OMERO_DB_PASS=
09:46:19++ OMERO_ROOT_PASS=omero
09:46:19++ OMERO_DATA_DIR=/OMERO
09:46:19++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:46:19+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:46:23+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:46:23Collecting zeroc-ice==3.6.5
09:46:24 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:46:25 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.7 MB/s eta 0:00:00
09:46:26Installing collected packages: zeroc-ice
09:46:26Successfully installed zeroc-ice-3.6.5
09:46:2609:46:26[notice] A new release of pip available: 22.3.1 -> 25.0.1
09:46:26[notice] To update, run: python3.11 -m pip install --upgrade pip
09:46:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:46:27Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:46:27Collecting setuptools<66
09:46:27 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:46:27Collecting omero-py
09:46:28 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
09:46:28Collecting urllib3<2
09:46:28 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:46:28Collecting appdirs
09:46:28 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:46:28Collecting future
09:46:28 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:46:28Collecting numpy<2
09:46:29 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
09:46:29Collecting Pillow>=10.0.0
09:46:29 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
09:46:29Collecting PyYAML
09:46:30 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
09:46:30Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:46:30Collecting requests
09:46:30 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
09:46:30Collecting portalocker
09:46:30 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
09:46:30Collecting charset-normalizer<4,>=2
09:46:30 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
09:46:30Collecting idna<4,>=2.5
09:46:30 Using cached idna-3.10-py3-none-any.whl (70 kB)
09:46:30Collecting certifi>=2017.4.17
09:46:30 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
09:46:31Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
09:46:31 Attempting uninstall: setuptools
09:46:31 Found existing installation: setuptools 65.5.1
09:46:31 Uninstalling setuptools-65.5.1:
09:46:31 Successfully uninstalled setuptools-65.5.1
09:46:36Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
09:46:3609:46:36[notice] A new release of pip available: 22.3.1 -> 25.0.1
09:46:36[notice] To update, run: python3.11 -m pip install --upgrade pip
09:46:36+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:46:36++ deactivate nondestructive
09:46:36++ '[' -n '' ']'
09:46:36++ '[' -n '' ']'
09:46:36++ hash -r
09:46:36++ '[' -n '' ']'
09:46:36++ unset VIRTUAL_ENV
09:46:36++ unset VIRTUAL_ENV_PROMPT
09:46:36++ '[' '!' nondestructive = nondestructive ']'
09:46:36++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:46:36++ export VIRTUAL_ENV
09:46:36++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:46:36++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:46:36++ export PATH
09:46:36++ '[' -n '' ']'
09:46:36++ '[' -z '' ']'
09:46:36++ _OLD_VIRTUAL_PS1=
09:46:36++ PS1='(omero-virtualenv) '
09:46:36++ export PS1
09:46:36++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:46:36++ export VIRTUAL_ENV_PROMPT
09:46:36++ hash -r
09:46:36+ source docs/hudson/OMERO.sh
09:46:36++ set -e
09:46:36++ set -u
09:46:36++ set -x
09:46:36++ source docs/hudson/functions.sh
09:46:36++ echo Building merge_ci
09:46:36Building merge_ci
09:46:36++ python3 ./build.py build-dev release-all
09:46:37OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:46:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:46:3809:46:38check-ivy:
09:46:38Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:46:38Created dir: /home/omero/workspace/OMERO-build/src/target
09:46:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:46:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:46:4009:46:40build-scons:
09:46:40Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:46:41No sub-builds to iterate on
09:46:41Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:46:4109:46:41buildlist:
09:46:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:46:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:46:4109:46:41clean:
09:46:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:46:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:46:4209:46:42python-clean:
09:46:42WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:46:42/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-205da1defd-ice36-b365') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:46:42 warnings.warn(
09:46:42running clean
09:46:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:46:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:46:4209:46:42python-clean:
09:46:42WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:46:42/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-205da1defd-ice36-b365') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:46:42 warnings.warn(
09:46:42running clean
09:46:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:46:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:46:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:46:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:46:4309:46:43python-clean:
09:46:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:46:43/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-205da1defd-ice36-b365') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:46:43 warnings.warn(
09:46:43running clean
09:46:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:46:43Deleting directory /home/omero/workspace/OMERO-build/src/target
09:46:4309:46:43build-scons:
09:46:43Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:46:4309:46:43build:
09:46:43No sub-builds to iterate on
09:46:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:46:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:46:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:46:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:46:4309:46:43tools-init:
09:46:43no-op
09:46:4409:46:44retrieve:
09:46:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:46:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:46:44WARNING: An illegal reflective access operation has occurred
09:46:44WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:46:44WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:46:44WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:46:44WARNING: All illegal access operations will be denied in a future release
09:47:2209:47:22prepare:
09:47:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:47:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:2309:47:23pre-compile:
09:47:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:2309:47:23compile:
09:47:23no-op
09:47:2309:47:23package:
09:47:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:47:2409:47:24install:
09:47:24:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-546-205da1defd-ice36-b365 :: integration :: Sun Mar 30 09:46:43 UTC 2025
09:47:24 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:47:24:: publishing :: omero#omero_client
09:47:24 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-546-205da1defd-ice36-b365/omero_client-5.6.3-546-205da1defd-ice36-b365.jar
09:47:24 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-546-205da1defd-ice36-b365/omero_client-5.6.3-546-205da1defd-ice36-b365.xml
09:47:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:2409:47:24retrieve:
09:47:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:47:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:24Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:47:2409:47:24dist:
09:47:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:47:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:47:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:47:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:47:24Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:47:24Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:47:24Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:47:25Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:47:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:47:2509:47:25copy-licenses:
09:47:25Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:47:25Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:47:25Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:47:2609:47:26copy-history:
09:47:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:47:2609:47:26copy-etc:
09:47:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:47:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:47:2709:47:27copy-sql:
09:47:27Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:47:3309:47:33copy-server:
09:47:33 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
09:47:3309:47:33copy-client:
09:47:33Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:47:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
09:47:3509:47:35update-version:
09:47:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:47:3509:47:35create-workdirs:
09:47:35Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:47:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:47:3509:47:35copy-luts:
09:47:35Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:47:35Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:47:3609:47:36test-compile:
09:47:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:47:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:47:3609:47:36testng-init:
09:47:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:47:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:3909:47:39,541 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
09:47:3909:47:39,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - No custom configurators were discovered as a service.
09:47:3909:47:39,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:47:3909:47:39,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:47:3909:47:39,547 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:47:3909:47:39,547 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:47:3909:47:39,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:47:3909:47:39,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:47:3909:47:39,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:47:3909:47:39,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:47:3909:47:39,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:47:3909:47:39,551 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@78682201 - Resource [logback.xml] occurs multiple times on the classpath.
09:47:3909:47:39,551 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@78682201 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:47:3909:47:39,551 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@78682201 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:47:3909:47:39,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:47:3909:47:39,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:47:3909:47:39,768 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:47:3909:47:39,770 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d7a0e06 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:47:3909:47:39,770 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d7a0e06 - Please move "immediateFlush" property into the enclosing appender.
09:47:3909:47:39,832 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d7a0e06 - Setting the "immediateFlush" property of the enclosing appender to true
09:47:3909:47:39,833 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:47:3909:47:39,833 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:47:3909:47:39,833 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:47:3909:47:39,833 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:47:3909:47:39,833 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:47:3909:47:39,833 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:47:3909:47:39,834 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2c3f9229 - End of configuration.
09:47:3909:47:39,836 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@abe3a3 - Registering current configuration as safe fallback point
09:47:3909:47:39,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7a9ad451 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:47:3909:47:39lifecycle.test-compile:
09:47:39Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:47:39Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:47:40warning: [options] bootstrap class path not set in conjunction with -source 8
09:47:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:43import omero.grid.RawAccessRequest;
09:47:43 ^
09:47:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:43import omero.grid.RawAccessRequest;
09:47:43 ^
09:47:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:43import omero.grid.RawAccessRequest;
09:47:43 ^
09:47:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:43import omero.model.ImportJob;
09:47:43 ^
09:47:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:47:43import omero.model.ImportJobI;
09:47:43 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:47:44 IObject link = (IObject) linkClass.newInstance();
09:47:44 ^
09:47:44 where T is a type-variable:
09:47:44 T extends Object declared in class Class
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:47:44 T copy = (T) obj.getClass().newInstance();
09:47:44 ^
09:47:44 where T is a type-variable:
09:47:44 T extends Object declared in class Class
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:44 RawAccessRequest raw = new RawAccessRequest();
09:47:44 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:44 RawAccessRequest raw = new RawAccessRequest();
09:47:44 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:47:44 raw.repoUuid = legacy.root().getHash().getValue();
09:47:44 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:47:44 raw.command = "rm";
09:47:44 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:47:44 raw.args = Arrays.asList(path);
09:47:44 ^
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:47:44 final IObject link = linkClass.newInstance();
09:47:44 ^
09:47:44 where T is a type-variable:
09:47:44 T extends Object declared in class Class
09:47:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:47:44 originalLink.setChild(annotationClass.newInstance());
09:47:44 ^
09:47:44 where T is a type-variable:
09:47:44 T extends Object declared in class Class
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:47:45 RoiResult r = svc.findByImage(id, new RoiOptions());
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:45 final RawAccessRequest request = new RawAccessRequest();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:45 final RawAccessRequest request = new RawAccessRequest();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:47:45 request.repoUuid = repo.root().getHash().getValue();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:47:45 request.command = "exists";
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:47:45 request.args = Collections.singletonList(dirPath);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:45 final RawAccessRequest request = new RawAccessRequest();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:47:45 final RawAccessRequest request = new RawAccessRequest();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:47:45 request.repoUuid = repo.root().getHash().getValue();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:47:45 request.command = "exists";
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:47:45 request.args = Collections.singletonList(dirName);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:45 final ImportJob importJob = new ImportJobI();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:47:45 final ImportJob importJob = new ImportJobI();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:47:45 importJob.setImageName(omero.rtypes.rstring(name));
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:47:45 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:45 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:45 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:47:45 final String savedName = sent.getImageName().getValue().toString();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:47:45 final String savedDesc = sent.getImageDescription().getValue().toString();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:45 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:47:45 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:47:45 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:47:45 ^
09:47:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:47:45 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:47:45 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 RoiResult r = svc.findByImage(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:47:46 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:47:46 table = svc.getTable(f.getId().getValue());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 RoiResult r = svc.findByImage(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:47:46 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:47:46 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:47:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:47:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:47:46 svc.getShapeStatsRestricted(
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:47:46 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:47:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:47:46 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:47:46 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:47:46 request.typesToIgnore = Collections.singletonList("Annotation");
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:47:46 request.typesToIgnore = Collections.singletonList("Annotation");
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:47:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:47:46 p2.setRelatedTo(p1);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:47:46 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:47:46 pixels1.setRelatedTo(pixels2);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:47:46 Pixels pixels = pixels1.getRelatedTo();
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:47:46 Assert.assertNull(pixels1.getRelatedTo());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:47:46 pixels1.setRelatedTo(pixels2);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:47:46 Pixels pixels = pixels1.getRelatedTo();
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:47:46 Assert.assertNull(pixels1.getRelatedTo());
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:47:46 ^
09:47:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:47:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:47:46 ^
09:47:46Note: Some input files use unchecked or unsafe operations.
09:47:46Note: Recompile with -Xlint:unchecked for details.
09:47:4688 warnings
09:47:46Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2118650002.tmp
09:47:46Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:47:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:47:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-546-205da1defd-ice36-b365 :: integration :: Sun Mar 30 09:47:36 UTC 2025
09:47:47 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:47:47:: publishing :: omero#OmeroJava-test
09:47:47 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-546-205da1defd-ice36-b365.jar
09:47:47 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-546-205da1defd-ice36-b365.xml
09:47:4709:47:47build-eclipse:
09:47:47No sub-builds to iterate on
09:47:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:47:4709:47:47retrieve:
09:47:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:47:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:4909:47:49prepare:
09:47:49Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:47:5009:47:50release-clients:
09:47:50Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-546-205da1defd-ice36-b365.zip
09:47:5709:47:57release-zip:
09:47:57Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:48:1109:48:11BUILD SUCCESSFUL
09:48:11Total time: 1 minute 33 seconds
09:48:11++ '[' -d .git ']'
09:48:11++ python3 ./build.py release-src
09:48:11OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:48:11Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:48:1109:48:11release-src-git:
09:48:11Releasing openmicroscopy-5.6.3-546-205da1defd-ice36-b365
09:48:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-546-205da1defd-ice36-b365.zip
09:48:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-546-205da1defd-ice36-b365-base.zip
09:48:1409:48:14BUILD SUCCESSFUL
09:48:14Total time: 3 seconds
09:48:14++ echo BUILD_NUMBER=365
09:48:14++ echo OMERO_BRANCH=merge_ci
09:48:14++ git_info
09:48:14+++ git rev-parse HEAD
09:48:14++ HEAD=205da1defd5e90021300be16dbf03351254007d0
09:48:14++ git log --max-count=1 205da1defd5e90021300be16dbf03351254007d0
09:48:14++ env
09:48:14++ sort
09:48:14Archiving artifacts
09:48:43Finished: SUCCESS
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