14:35:36Started by upstream project "Trigger" build number 42414:35:36originally caused by:
14:35:36 Started by user devspace14:35:36 Restarted from build #423, stage OMERO Python
14:35:36Running as SYSTEM
14:35:36Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:35:36The recommended git tool is: NONE
14:35:36No credentials specified
14:35:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:35:36Fetching changes from the remote Git repository
14:35:36 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:35:36Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git14:35:36 > git --version # timeout=10
14:35:36 > git --version # 'git version 2.43.5'
14:35:36 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:35:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
14:35:37Checking out Revision 2054640d80975aaac40a71c537f3bd719dd9d52c (origin/merge_ci)
14:35:37 > git config core.sparsecheckout # timeout=10
14:35:37 > git checkout -f 2054640d80975aaac40a71c537f3bd719dd9d52c # timeout=10
14:35:37Commit message: "Add version.properties to etc/omero.properties"
14:35:37 > git rev-list --no-walk 205da1defd5e90021300be16dbf03351254007d0 # timeout=10
14:35:37Cleaning workspace
14:35:37 > git rev-parse --verify HEAD # timeout=10
14:35:37Resetting working tree
14:35:37 > git reset --hard # timeout=10
14:35:37 > git clean -fdx # timeout=10
14:35:37Copied 6 artifacts from "OMERO-python-superbuild-build" build number 35814:35:37[OMERO-build] $ /bin/bash -xe /tmp/jenkins11721449945212321634.sh
14:35:37+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
14:35:37+ cd src
14:35:37+ export OMERO_BRANCH=merge_ci
14:35:37+ OMERO_BRANCH=merge_ci
14:35:37+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:35:37+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
14:35:38+ source /home/omero/settings.env
14:35:38++ OMERO_DB_HOST=pg
14:35:38++ OMERO_DB_USER=postgres
14:35:38++ OMERO_DB_PASS=
14:35:38++ OMERO_ROOT_PASS=omero
14:35:38++ OMERO_DATA_DIR=/OMERO
14:35:38++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:35:38+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:35:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl14:35:41Collecting zeroc-ice==3.6.5
14:35:42 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
14:35:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 9.3 MB/s eta 0:00:00
14:35:45Installing collected packages: zeroc-ice
14:35:45Successfully installed zeroc-ice-3.6.5
14:35:4514:35:45[notice] A new release of pip available: 22.3.1 -> 25.0.1
14:35:45[notice] To update, run: python3.11 -m pip install --upgrade pip
14:35:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
14:35:46Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
14:35:46Collecting setuptools<66
14:35:46 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
14:35:46Collecting omero-py
14:35:46 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
14:35:46Collecting urllib3<2
14:35:46 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
14:35:46Collecting appdirs
14:35:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:35:46Collecting future
14:35:47 Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:35:47Collecting numpy<2
14:35:47 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
14:35:47Collecting Pillow>=10.0.0
14:35:47 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
14:35:48Collecting PyYAML
14:35:48 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
14:35:48Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
14:35:48Collecting requests
14:35:48 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
14:35:48Collecting portalocker
14:35:48 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
14:35:48Collecting charset-normalizer<4,>=2
14:35:48 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
14:35:48Collecting idna<4,>=2.5
14:35:48 Using cached idna-3.10-py3-none-any.whl (70 kB)
14:35:48Collecting certifi>=2017.4.17
14:35:48 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
14:35:48Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
14:35:48 Attempting uninstall: setuptools
14:35:48 Found existing installation: setuptools 65.5.1
14:35:48 Uninstalling setuptools-65.5.1:
14:35:49 Successfully uninstalled setuptools-65.5.1
14:35:54Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
14:35:5414:35:54[notice] A new release of pip available: 22.3.1 -> 25.0.1
14:35:54[notice] To update, run: python3.11 -m pip install --upgrade pip
14:35:55+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
14:35:55++ deactivate nondestructive
14:35:55++ '[' -n '' ']'
14:35:55++ '[' -n '' ']'
14:35:55++ hash -r
14:35:55++ '[' -n '' ']'
14:35:55++ unset VIRTUAL_ENV
14:35:55++ unset VIRTUAL_ENV_PROMPT
14:35:55++ '[' '!' nondestructive = nondestructive ']'
14:35:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
14:35:55++ export VIRTUAL_ENV
14:35:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:35:55++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:35:55++ export PATH
14:35:55++ '[' -n '' ']'
14:35:55++ '[' -z '' ']'
14:35:55++ _OLD_VIRTUAL_PS1=
14:35:55++ PS1='(omero-virtualenv) '
14:35:55++ export PS1
14:35:55++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
14:35:55++ export VIRTUAL_ENV_PROMPT
14:35:55++ hash -r
14:35:55+ source docs/hudson/OMERO.sh
14:35:55++ set -e
14:35:55++ set -u
14:35:55++ set -x
14:35:55++ source docs/hudson/functions.sh
14:35:55++ echo Building merge_ci
14:35:55Building merge_ci
14:35:55++ python3 ./build.py build-dev release-all
14:35:55OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:35:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:35:5514:35:55check-ivy:
14:35:55Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:35:55Created dir: /home/omero/workspace/OMERO-build/src/target
14:35:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:35:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:35:5614:35:56build-scons:
14:35:56Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:35:56No sub-builds to iterate on
14:35:56Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:35:5614:35:56buildlist:
14:35:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:35:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:35:5614:35:56clean:
14:35:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:35:5714:35:57python-clean:
14:35:57WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:35:57/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-2054640d80-ice36-b366') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:35:57 warnings.warn(
14:35:57running clean
14:35:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:35:5714:35:57python-clean:
14:35:57WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:35:57/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-2054640d80-ice36-b366') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:35:57 warnings.warn(
14:35:57running clean
14:35:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:35:5814:35:58python-clean:
14:35:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:35:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-546-2054640d80-ice36-b366') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:35:58 warnings.warn(
14:35:58running clean
14:35:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:35:58Deleting directory /home/omero/workspace/OMERO-build/src/target
14:35:5814:35:58build-scons:
14:35:58Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:35:5814:35:58build:
14:35:58No sub-builds to iterate on
14:35:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:35:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:35:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:35:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:35:5814:35:58tools-init:
14:35:58no-op
14:35:5814:35:58retrieve:
14:35:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:35:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:35:59WARNING: An illegal reflective access operation has occurred
14:35:59WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
14:35:59WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
14:35:59WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
14:35:59WARNING: All illegal access operations will be denied in a future release
14:36:3114:36:31prepare:
14:36:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:36:3114:36:31pre-compile:
14:36:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:36:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:36:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:36:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:36:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:36:3214:36:32compile:
14:36:32no-op
14:36:3214:36:32package:
14:36:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
14:36:3214:36:32install:
14:36:32:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-546-2054640d80-ice36-b366 :: integration :: Sun Mar 30 14:35:58 UTC 2025
14:36:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
14:36:32:: publishing :: omero#omero_client
14:36:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-546-2054640d80-ice36-b366/omero_client-5.6.3-546-2054640d80-ice36-b366.jar
14:36:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-546-2054640d80-ice36-b366/omero_client-5.6.3-546-2054640d80-ice36-b366.xml
14:36:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:36:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:36:3314:36:33retrieve:
14:36:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:36:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:36:33Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:36:3314:36:33dist:
14:36:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
14:36:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
14:36:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:36:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:36:33Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
14:36:33Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
14:36:33Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
14:36:33Entering /home/omero/workspace/OMERO-build/src/components/tests...
14:36:33Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:36:3414:36:34copy-licenses:
14:36:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:36:34Created dir: /home/omero/workspace/OMERO-build/src/dist/share
14:36:34Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
14:36:3414:36:34copy-history:
14:36:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:36:3414:36:34copy-etc:
14:36:34Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
14:36:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
14:36:3414:36:34copy-sql:
14:36:34Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
14:36:3914:36:39copy-server:
14:36:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
14:36:3914:36:39copy-client:
14:36:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
14:36:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
14:36:4014:36:40update-version:
14:36:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
14:36:4014:36:40create-workdirs:
14:36:40Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
14:36:40Created dir: /home/omero/workspace/OMERO-build/src/dist/var
14:36:4014:36:40copy-luts:
14:36:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:36:40Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:36:4014:36:40test-compile:
14:36:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:36:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:36:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:36:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:36:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:36:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:36:41Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:36:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:36:4114:36:41testng-init:
14:36:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:36:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:36:4414:36:44,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
14:36:4414:36:44,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service.
14:36:4414:36:44,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
14:36:4414:36:44,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
14:36:4414:36:44,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
14:36:4414:36:44,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
14:36:4414:36:44,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
14:36:4414:36:44,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
14:36:4414:36:44,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
14:36:4414:36:44,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
14:36:4414:36:44,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:36:4414:36:44,226 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath.
14:36:4414:36:44,226 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:36:4414:36:44,226 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
14:36:4414:36:44,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
14:36:4414:36:44,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
14:36:4414:36:44,453 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
14:36:4414:36:44,455 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
14:36:4414:36:44,455 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender.
14:36:4414:36:44,517 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true
14:36:4414:36:44,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
14:36:4414:36:44,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
14:36:4414:36:44,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
14:36:4414:36:44,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
14:36:4414:36:44,519 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
14:36:4414:36:44,519 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
14:36:4414:36:44,520 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration.
14:36:4414:36:44,522 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point
14:36:4414:36:44,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
14:36:4414:36:44lifecycle.test-compile:
14:36:44Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:36:44Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:36:44warning: [options] bootstrap class path not set in conjunction with -source 8
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:46import omero.grid.RawAccessRequest;
14:36:46 ^
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:46import omero.grid.RawAccessRequest;
14:36:46 ^
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:46import omero.grid.RawAccessRequest;
14:36:46 ^
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:46import omero.model.ImportJob;
14:36:46 ^
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:36:46import omero.model.ImportJobI;
14:36:46 ^
14:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
14:36:46 IObject link = (IObject) linkClass.newInstance();
14:36:46 ^
14:36:46 where T is a type-variable:
14:36:46 T extends Object declared in class Class
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
14:36:47 T copy = (T) obj.getClass().newInstance();
14:36:47 ^
14:36:47 where T is a type-variable:
14:36:47 T extends Object declared in class Class
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:47 RawAccessRequest raw = new RawAccessRequest();
14:36:47 ^
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:47 RawAccessRequest raw = new RawAccessRequest();
14:36:47 ^
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:36:47 raw.repoUuid = legacy.root().getHash().getValue();
14:36:47 ^
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
14:36:47 raw.command = "rm";
14:36:47 ^
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
14:36:47 raw.args = Arrays.asList(path);
14:36:47 ^
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
14:36:47 final IObject link = linkClass.newInstance();
14:36:47 ^
14:36:47 where T is a type-variable:
14:36:47 T extends Object declared in class Class
14:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
14:36:47 originalLink.setChild(annotationClass.newInstance());
14:36:47 ^
14:36:47 where T is a type-variable:
14:36:47 T extends Object declared in class Class
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 RoiResult r = svc.findByImage(id, new RoiOptions());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:48 final RawAccessRequest request = new RawAccessRequest();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:48 final RawAccessRequest request = new RawAccessRequest();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:36:48 request.repoUuid = repo.root().getHash().getValue();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
14:36:48 request.command = "exists";
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
14:36:48 request.args = Collections.singletonList(dirPath);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:48 final RawAccessRequest request = new RawAccessRequest();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:36:48 final RawAccessRequest request = new RawAccessRequest();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:36:48 request.repoUuid = repo.root().getHash().getValue();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
14:36:48 request.command = "exists";
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
14:36:48 request.args = Collections.singletonList(dirName);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:48 final ImportJob importJob = new ImportJobI();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:36:48 final ImportJob importJob = new ImportJobI();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
14:36:48 importJob.setImageName(omero.rtypes.rstring(name));
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
14:36:48 importJob.setImageDescription(omero.rtypes.rstring(desc));
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:36:48 final String savedName = sent.getImageName().getValue().toString();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:36:48 final String savedDesc = sent.getImageDescription().getValue().toString();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:36:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:36:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:36:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 RoiResult r = svc.findByImage(image.getId().getValue(),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
14:36:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
14:36:48 table = svc.getTable(f.getId().getValue());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 RoiResult r = svc.findByImage(image.getId().getValue(),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:36:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:36:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:36:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
14:36:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:36:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:36:48 svc.getShapeStatsRestricted(
14:36:48 ^
14:36:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:36:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
14:36:48 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:36:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:36:49 request.typesToIgnore = Collections.singletonList("TagAnnotation");
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:36:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:36:49 request.typesToIgnore = Collections.singletonList("Annotation");
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:36:49 request.typesToIgnore = Collections.singletonList("Annotation");
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:36:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:36:49 p2.setRelatedTo(p1);
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:36:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:36:49 pixels1.setRelatedTo(pixels2);
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:36:49 Pixels pixels = pixels1.getRelatedTo();
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:36:49 Assert.assertNull(pixels1.getRelatedTo());
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:36:49 pixels1.setRelatedTo(pixels2);
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:36:49 Pixels pixels = pixels1.getRelatedTo();
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:36:49 Assert.assertNull(pixels1.getRelatedTo());
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:36:49 ^
14:36:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:36:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:36:49 ^
14:36:49Note: Some input files use unchecked or unsafe operations.
14:36:49Note: Recompile with -Xlint:unchecked for details.
14:36:4988 warnings
14:36:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_28144254.tmp
14:36:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
14:36:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:36:49:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-546-2054640d80-ice36-b366 :: integration :: Sun Mar 30 14:36:41 UTC 2025
14:36:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
14:36:49:: publishing :: omero#OmeroJava-test
14:36:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-546-2054640d80-ice36-b366.jar
14:36:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-546-2054640d80-ice36-b366.xml
14:36:4914:36:49build-eclipse:
14:36:49No sub-builds to iterate on
14:36:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:36:5014:36:50retrieve:
14:36:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:36:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:36:5314:36:53prepare:
14:36:53Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:36:5514:36:55release-clients:
14:36:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-546-2054640d80-ice36-b366.zip
14:37:0114:37:01release-zip:
14:37:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-546-2054640d80-ice36-b366.zip
14:37:1514:37:15BUILD SUCCESSFUL
14:37:15Total time: 1 minute 20 seconds
14:37:15++ '[' -d .git ']'
14:37:15++ python3 ./build.py release-src
14:37:15OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:37:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:37:1614:37:16release-src-git:
14:37:16Releasing openmicroscopy-5.6.3-546-2054640d80-ice36-b366
14:37:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-546-2054640d80-ice36-b366.zip
14:37:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-546-2054640d80-ice36-b366-base.zip
14:37:1914:37:19BUILD SUCCESSFUL
14:37:19Total time: 3 seconds
14:37:19++ echo BUILD_NUMBER=366
14:37:19++ echo OMERO_BRANCH=merge_ci
14:37:19++ git_info
14:37:19+++ git rev-parse HEAD
14:37:19++ HEAD=2054640d80975aaac40a71c537f3bd719dd9d52c
14:37:19++ git log --max-count=1 2054640d80975aaac40a71c537f3bd719dd9d52c
14:37:19++ env
14:37:19++ sort
14:37:19Archiving artifacts
14:37:47Finished: SUCCESS
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