00:42:37Started by upstream project "Trigger" build number 43800:42:37originally caused by:
00:42:37 Started by timer
00:42:37Running as SYSTEM
00:42:37Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:42:37The recommended git tool is: NONE
00:42:37No credentials specified
00:42:37 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:42:37Fetching changes from the remote Git repository
00:42:37 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:42:37Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:42:37 > git --version # timeout=10
00:42:37 > git --version # 'git version 2.43.5'
00:42:37 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:42:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:42:37Checking out Revision 27a4caffff36f74ad4eb57a0a96332af6c4f1f1e (origin/merge_ci)
00:42:37 > git config core.sparsecheckout # timeout=10
00:42:37 > git checkout -f 27a4caffff36f74ad4eb57a0a96332af6c4f1f1e # timeout=10
00:42:37Commit message: "Add version.properties to etc/omero.properties"
00:42:37 > git rev-list --no-walk 540005e3c091bfbca57acc50a40a81adbc70b99e # timeout=10
00:42:37Cleaning workspace
00:42:37 > git rev-parse --verify HEAD # timeout=10
00:42:37Resetting working tree
00:42:37 > git reset --hard # timeout=10
00:42:37 > git clean -fdx # timeout=10
00:42:38Copied 6 artifacts from "OMERO-python-superbuild-build" build number 37200:42:38[OMERO-build] $ /bin/bash -xe /tmp/jenkins10556112947429247231.sh
00:42:38+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:42:38+ cd src
00:42:38+ export OMERO_BRANCH=merge_ci
00:42:38+ OMERO_BRANCH=merge_ci
00:42:38+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:42:38+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:42:38+ source /home/omero/settings.env
00:42:38++ OMERO_DB_HOST=pg
00:42:38++ OMERO_DB_USER=postgres
00:42:38++ OMERO_DB_PASS=
00:42:38++ OMERO_ROOT_PASS=omero
00:42:38++ OMERO_DATA_DIR=/OMERO
00:42:38++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:42:38+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:42:42+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:42:42Collecting zeroc-ice==3.6.5
00:42:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:42:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.4 MB/s eta 0:00:00
00:42:45Installing collected packages: zeroc-ice
00:42:45Successfully installed zeroc-ice-3.6.5
00:42:4500:42:45[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:42:45[notice] To update, run: python3.11 -m pip install --upgrade pip
00:42:45+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:42:46Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:42:46Collecting setuptools<66
00:42:46 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:42:46Collecting omero-py
00:42:46 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:42:46Collecting urllib3<2
00:42:46 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:42:46Collecting appdirs
00:42:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:42:46Collecting future
00:42:46 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:42:47Collecting numpy<3
00:42:47 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:42:47Collecting Pillow>=10.0.0
00:42:47 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
00:42:47Collecting PyYAML
00:42:47 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:42:47Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:42:48Collecting requests
00:42:48 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:42:48Collecting portalocker
00:42:48 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:42:48Collecting charset-normalizer<4,>=2
00:42:48 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
00:42:48Collecting idna<4,>=2.5
00:42:48 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:42:48Collecting certifi>=2017.4.17
00:42:48 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
00:42:48Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:42:48 Attempting uninstall: setuptools
00:42:48 Found existing installation: setuptools 65.5.1
00:42:48 Uninstalling setuptools-65.5.1:
00:42:48 Successfully uninstalled setuptools-65.5.1
00:42:54Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.4 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:42:5400:42:54[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:42:54[notice] To update, run: python3.11 -m pip install --upgrade pip
00:42:54+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:42:54++ deactivate nondestructive
00:42:54++ '[' -n '' ']'
00:42:54++ '[' -n '' ']'
00:42:54++ hash -r
00:42:54++ '[' -n '' ']'
00:42:54++ unset VIRTUAL_ENV
00:42:54++ unset VIRTUAL_ENV_PROMPT
00:42:54++ '[' '!' nondestructive = nondestructive ']'
00:42:54++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:42:54++ export VIRTUAL_ENV
00:42:54++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:42:54++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:42:54++ export PATH
00:42:54++ '[' -n '' ']'
00:42:54++ '[' -z '' ']'
00:42:54++ _OLD_VIRTUAL_PS1=
00:42:54++ PS1='(omero-virtualenv) '
00:42:54++ export PS1
00:42:54++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:42:54++ export VIRTUAL_ENV_PROMPT
00:42:54++ hash -r
00:42:54+ source docs/hudson/OMERO.sh
00:42:54++ set -e
00:42:54++ set -u
00:42:54++ set -x
00:42:54++ source docs/hudson/functions.sh
00:42:54++ echo Building merge_ci
00:42:54Building merge_ci
00:42:54++ python3 ./build.py build-dev release-all
00:42:54Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:42:5400:42:54check-ivy:
00:42:54Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:42:54Created dir: /home/omero/workspace/OMERO-build/src/target
00:42:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:42:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:5500:42:55build-scons:
00:42:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:42:55No sub-builds to iterate on
00:42:55Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:42:5600:42:56buildlist:
00:42:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:42:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:5600:42:56clean:
00:42:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:42:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:42:5600:42:56python-clean:
00:42:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:42:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-27a4caffff-ice36-b380') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:42:56 warnings.warn(
00:42:56running clean
00:42:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:42:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:42:5600:42:56python-clean:
00:42:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:42:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-27a4caffff-ice36-b380') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:42:56 warnings.warn(
00:42:56running clean
00:42:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:42:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:42:5700:42:57python-clean:
00:42:57WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:42:57/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-27a4caffff-ice36-b380') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:42:57 warnings.warn(
00:42:57running clean
00:42:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:42:57Deleting directory /home/omero/workspace/OMERO-build/src/target
00:42:5700:42:57build-scons:
00:42:57Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:42:5700:42:57build:
00:42:57No sub-builds to iterate on
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:42:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:42:5700:42:57tools-init:
00:42:57no-op
00:42:5700:42:57retrieve:
00:42:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:42:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:58WARNING: An illegal reflective access operation has occurred
00:42:58WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:42:58WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:42:58WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:42:58WARNING: All illegal access operations will be denied in a future release
00:43:1600:43:16prepare:
00:43:16Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:1600:43:16pre-compile:
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:1600:43:16compile:
00:43:16no-op
00:43:1600:43:16package:
00:43:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:43:1700:43:17install:
00:43:17:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-27a4caffff-ice36-b380 :: integration :: Sat Apr 12 00:42:57 UTC 2025
00:43:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:43:17:: publishing :: omero#omero_client
00:43:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-27a4caffff-ice36-b380/omero_client-5.6.3-552-27a4caffff-ice36-b380.jar
00:43:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-27a4caffff-ice36-b380/omero_client-5.6.3-552-27a4caffff-ice36-b380.xml
00:43:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:1700:43:17retrieve:
00:43:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:43:1800:43:18dist:
00:43:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:43:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:43:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:43:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:43:18Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:43:18Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:43:18Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:43:18Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:43:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:43:1800:43:18copy-licenses:
00:43:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:43:18Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:43:18Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:43:1800:43:18copy-history:
00:43:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:43:1800:43:18copy-etc:
00:43:18Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:43:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:43:1800:43:18copy-sql:
00:43:18Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:43:2300:43:23copy-server:
00:43:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:43:2300:43:23copy-client:
00:43:23Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:43:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:43:2400:43:24update-version:
00:43:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:43:2400:43:24create-workdirs:
00:43:24Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:43:24Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:43:2400:43:24copy-luts:
00:43:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:43:24Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:43:2400:43:24test-compile:
00:43:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:43:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:43:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:2500:43:25testng-init:
00:43:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:2800:43:27,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:43:2800:43:27,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - No custom configurators were discovered as a service.
00:43:2800:43:27,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:43:2800:43:27,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:43:2800:43:27,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:43:2800:43:27,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:43:2800:43:27,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:43:2800:43:27,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:43:2800:43:27,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:43:2800:43:27,987 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:43:2800:43:27,987 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:43:2800:43:27,988 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs multiple times on the classpath.
00:43:2800:43:27,988 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:43:2800:43:27,988 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:43:2800:43:28,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:43:2800:43:28,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:43:2800:43:28,205 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:43:2800:43:28,207 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:43:2800:43:28,207 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Please move "immediateFlush" property into the enclosing appender.
00:43:2800:43:28,267 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Setting the "immediateFlush" property of the enclosing appender to true
00:43:2800:43:28,268 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:43:2800:43:28,268 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:43:2800:43:28,268 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:43:2800:43:28,268 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:43:2800:43:28,268 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:43:2800:43:28,268 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:43:2800:43:28,270 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@abe3a3 - End of configuration.
00:43:2800:43:28,272 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@396ab19d - Registering current configuration as safe fallback point
00:43:2800:43:28,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:43:2800:43:28lifecycle.test-compile:
00:43:28Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:28Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:28warning: [options] bootstrap class path not set in conjunction with -source 8
00:43:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:29import omero.grid.RawAccessRequest;
00:43:29 ^
00:43:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:29import omero.grid.RawAccessRequest;
00:43:29 ^
00:43:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:30import omero.grid.RawAccessRequest;
00:43:30 ^
00:43:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:30import omero.model.ImportJob;
00:43:30 ^
00:43:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:43:30import omero.model.ImportJobI;
00:43:30 ^
00:43:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:43:30 IObject link = (IObject) linkClass.newInstance();
00:43:30 ^
00:43:30 where T is a type-variable:
00:43:30 T extends Object declared in class Class
00:43:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:43:30 T copy = (T) obj.getClass().newInstance();
00:43:30 ^
00:43:30 where T is a type-variable:
00:43:30 T extends Object declared in class Class
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 RawAccessRequest raw = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 RawAccessRequest raw = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:31 raw.repoUuid = legacy.root().getHash().getValue();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:31 raw.command = "rm";
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:31 raw.args = Arrays.asList(path);
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:43:31 final IObject link = linkClass.newInstance();
00:43:31 ^
00:43:31 where T is a type-variable:
00:43:31 T extends Object declared in class Class
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:43:31 originalLink.setChild(annotationClass.newInstance());
00:43:31 ^
00:43:31 where T is a type-variable:
00:43:31 T extends Object declared in class Class
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:31 RoiResult r = svc.findByImage(id, new RoiOptions());
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 final RawAccessRequest request = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 final RawAccessRequest request = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:31 request.repoUuid = repo.root().getHash().getValue();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:31 request.command = "exists";
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:31 request.args = Collections.singletonList(dirPath);
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 final RawAccessRequest request = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:31 final RawAccessRequest request = new RawAccessRequest();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:31 request.repoUuid = repo.root().getHash().getValue();
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:31 request.command = "exists";
00:43:31 ^
00:43:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:31 request.args = Collections.singletonList(dirName);
00:43:31 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:32 final ImportJob importJob = new ImportJobI();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:43:32 final ImportJob importJob = new ImportJobI();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:43:32 importJob.setImageName(omero.rtypes.rstring(name));
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:43:32 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:43:32 final String savedName = sent.getImageName().getValue().toString();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:43:32 final String savedDesc = sent.getImageDescription().getValue().toString();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:43:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:43:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 RoiResult r = svc.findByImage(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:43:32 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:43:32 table = svc.getTable(f.getId().getValue());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 RoiResult r = svc.findByImage(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:43:32 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:43:32 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:43:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:43:32 svc.getShapeStatsRestricted(
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:43:32 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:32 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:32 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:32 request.typesToIgnore = Collections.singletonList("Annotation");
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:32 request.typesToIgnore = Collections.singletonList("Annotation");
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:32 p2.setRelatedTo(p1);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:32 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:32 pixels1.setRelatedTo(pixels2);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:32 Pixels pixels = pixels1.getRelatedTo();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:32 Assert.assertNull(pixels1.getRelatedTo());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:32 pixels1.setRelatedTo(pixels2);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:32 Pixels pixels = pixels1.getRelatedTo();
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:32 Assert.assertNull(pixels1.getRelatedTo());
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:32 ^
00:43:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:32 ^
00:43:33Note: Some input files use unchecked or unsafe operations.
00:43:33Note: Recompile with -Xlint:unchecked for details.
00:43:3388 warnings
00:43:33Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_945817066.tmp
00:43:33Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:43:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:33:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-27a4caffff-ice36-b380 :: integration :: Sat Apr 12 00:43:25 UTC 2025
00:43:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:43:33:: publishing :: omero#OmeroJava-test
00:43:33 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-27a4caffff-ice36-b380.jar
00:43:33 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-27a4caffff-ice36-b380.xml
00:43:3300:43:33build-eclipse:
00:43:33No sub-builds to iterate on
00:43:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:3300:43:33retrieve:
00:43:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:3500:43:35prepare:
00:43:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:43:3600:43:36release-clients:
00:43:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-27a4caffff-ice36-b380.zip
00:43:4300:43:43release-zip:
00:43:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-27a4caffff-ice36-b380.zip
00:43:5700:43:57BUILD SUCCESSFUL
00:43:57Total time: 1 minute 2 seconds
00:43:57++ '[' -d .git ']'
00:43:57++ python3 ./build.py release-src
00:43:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:43:5700:43:57release-src-git:
00:43:57Releasing openmicroscopy-5.6.3-552-27a4caffff-ice36-b380
00:43:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-27a4caffff-ice36-b380.zip
00:43:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-27a4caffff-ice36-b380-base.zip
00:44:0000:44:00BUILD SUCCESSFUL
00:44:00Total time: 3 seconds
00:44:00++ echo BUILD_NUMBER=380
00:44:00++ echo OMERO_BRANCH=merge_ci
00:44:00++ git_info
00:44:00+++ git rev-parse HEAD
00:44:00++ HEAD=27a4caffff36f74ad4eb57a0a96332af6c4f1f1e
00:44:00++ git log --max-count=1 27a4caffff36f74ad4eb57a0a96332af6c4f1f1e
00:44:00++ env
00:44:00++ sort
00:44:00Archiving artifacts
00:44:29Finished: SUCCESS
![[Jenkins]](/jenkins/static/861d2fbf/images/svgs/logo.svg){kind=logo}
