00:38:49Started by upstream project "Trigger" build number 43900:38:49originally caused by:
00:38:49 Started by timer
00:38:49Running as SYSTEM
00:38:49Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:49The recommended git tool is: NONE
00:38:49No credentials specified
00:38:49 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:49Fetching changes from the remote Git repository
00:38:49 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:49Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:38:49 > git --version # timeout=10
00:38:49 > git --version # 'git version 2.43.5'
00:38:49 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:49Checking out Revision 55e5784f22b4b1e3accb40c36c22275224685165 (origin/merge_ci)
00:38:49 > git config core.sparsecheckout # timeout=10
00:38:49 > git checkout -f 55e5784f22b4b1e3accb40c36c22275224685165 # timeout=10
00:38:49Commit message: "Add version.properties to etc/omero.properties"
00:38:49 > git rev-list --no-walk 27a4caffff36f74ad4eb57a0a96332af6c4f1f1e # timeout=10
00:38:49Cleaning workspace
00:38:49 > git rev-parse --verify HEAD # timeout=10
00:38:49Resetting working tree
00:38:49 > git reset --hard # timeout=10
00:38:49 > git clean -fdx # timeout=10
00:38:50Copied 6 artifacts from "OMERO-python-superbuild-build" build number 37300:38:50[OMERO-build] $ /bin/bash -xe /tmp/jenkins18241069480549378038.sh
00:38:50+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:38:50+ cd src
00:38:50+ export OMERO_BRANCH=merge_ci
00:38:50+ OMERO_BRANCH=merge_ci
00:38:50+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:50+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:50+ source /home/omero/settings.env
00:38:50++ OMERO_DB_HOST=pg
00:38:50++ OMERO_DB_USER=postgres
00:38:50++ OMERO_DB_PASS=
00:38:50++ OMERO_ROOT_PASS=omero
00:38:50++ OMERO_DATA_DIR=/OMERO
00:38:50++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:50+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:38:54Collecting zeroc-ice==3.6.5
00:38:55 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:38:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.0 MB/s eta 0:00:00
00:38:57Installing collected packages: zeroc-ice
00:38:58Successfully installed zeroc-ice-3.6.5
00:38:5800:38:58[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:38:58[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:58+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:38:58Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:38:58Collecting setuptools<66
00:38:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:38:59Collecting omero-py
00:38:59 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:38:59Collecting urllib3<2
00:38:59 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:38:59Collecting appdirs
00:38:59 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:38:59Collecting future
00:38:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:38:59Collecting numpy<3
00:38:59 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:39:00Collecting Pillow>=10.0.0
00:39:00 Downloading pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:39:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 20.0 MB/s eta 0:00:00
00:39:00Collecting PyYAML
00:39:00 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:39:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:39:00Collecting requests
00:39:00 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:39:00Collecting portalocker
00:39:00 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:39:00Collecting charset-normalizer<4,>=2
00:39:00 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
00:39:01Collecting idna<4,>=2.5
00:39:01 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:39:01Collecting certifi>=2017.4.17
00:39:01 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
00:39:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:39:01 Attempting uninstall: setuptools
00:39:01 Found existing installation: setuptools 65.5.1
00:39:01 Uninstalling setuptools-65.5.1:
00:39:01 Successfully uninstalled setuptools-65.5.1
00:39:06Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.4 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:39:0600:39:06[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:39:06[notice] To update, run: python3.11 -m pip install --upgrade pip
00:39:07+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:39:07++ deactivate nondestructive
00:39:07++ '[' -n '' ']'
00:39:07++ '[' -n '' ']'
00:39:07++ hash -r
00:39:07++ '[' -n '' ']'
00:39:07++ unset VIRTUAL_ENV
00:39:07++ unset VIRTUAL_ENV_PROMPT
00:39:07++ '[' '!' nondestructive = nondestructive ']'
00:39:07++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:07++ export VIRTUAL_ENV
00:39:07++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:07++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:07++ export PATH
00:39:07++ '[' -n '' ']'
00:39:07++ '[' -z '' ']'
00:39:07++ _OLD_VIRTUAL_PS1=
00:39:07++ PS1='(omero-virtualenv) '
00:39:07++ export PS1
00:39:07++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:39:07++ export VIRTUAL_ENV_PROMPT
00:39:07++ hash -r
00:39:07+ source docs/hudson/OMERO.sh
00:39:07++ set -e
00:39:07++ set -u
00:39:07++ set -x
00:39:07++ source docs/hudson/functions.sh
00:39:07++ echo Building merge_ci
00:39:07Building merge_ci
00:39:07++ python3 ./build.py build-dev release-all
00:39:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:0700:39:07check-ivy:
00:39:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:07Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0800:39:08build-scons:
00:39:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:08No sub-builds to iterate on
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:0800:39:08buildlist:
00:39:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0900:39:09clean:
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:0900:39:09python-clean:
00:39:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-55e5784f22-ice36-b381') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:09 warnings.warn(
00:39:09running clean
00:39:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:0900:39:09python-clean:
00:39:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-55e5784f22-ice36-b381') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:09 warnings.warn(
00:39:09running clean
00:39:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:1000:39:10python-clean:
00:39:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:10/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-55e5784f22-ice36-b381') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:10 warnings.warn(
00:39:10running clean
00:39:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:10Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:1000:39:10build-scons:
00:39:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:1000:39:10build:
00:39:10No sub-builds to iterate on
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:1000:39:10tools-init:
00:39:10no-op
00:39:1000:39:10retrieve:
00:39:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:11WARNING: An illegal reflective access operation has occurred
00:39:11WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:39:11WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:39:11WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:39:11WARNING: All illegal access operations will be denied in a future release
00:39:3600:39:36prepare:
00:39:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:3600:39:36pre-compile:
00:39:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:3700:39:37compile:
00:39:37no-op
00:39:3700:39:37package:
00:39:37Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:39:3700:39:37install:
00:39:37:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-55e5784f22-ice36-b381 :: integration :: Sun Apr 13 00:39:10 UTC 2025
00:39:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:39:37:: publishing :: omero#omero_client
00:39:37 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-55e5784f22-ice36-b381/omero_client-5.6.3-552-55e5784f22-ice36-b381.jar
00:39:37 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-55e5784f22-ice36-b381/omero_client-5.6.3-552-55e5784f22-ice36-b381.xml
00:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:3800:39:38retrieve:
00:39:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:38Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:3800:39:38dist:
00:39:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:39:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:39:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:38Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:39:38Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:39:38Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:39:38Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:39:38Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:3800:39:38copy-licenses:
00:39:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:38Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:39:38Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:39:3800:39:38copy-history:
00:39:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:3800:39:38copy-etc:
00:39:38Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:39:3800:39:38copy-sql:
00:39:38Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:39:4300:39:43copy-server:
00:39:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:39:4300:39:43copy-client:
00:39:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:39:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:39:4400:39:44update-version:
00:39:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:4400:39:44create-workdirs:
00:39:44Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:39:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:39:4400:39:44copy-luts:
00:39:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:44Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:4400:39:44test-compile:
00:39:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:4500:39:45testng-init:
00:39:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:4800:39:48,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:39:4800:39:48,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - No custom configurators were discovered as a service.
00:39:4800:39:48,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:4800:39:48,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:4800:39:48,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:39:4800:39:48,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:39:4800:39:48,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:39:4800:39:48,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:4800:39:48,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:4800:39:48,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:39:4800:39:48,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:4800:39:48,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs multiple times on the classpath.
00:39:4800:39:48,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:4800:39:48,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:39:4800:39:48,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:39:4800:39:48,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:39:4800:39:48,312 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:39:4800:39:48,314 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:39:4800:39:48,314 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Please move "immediateFlush" property into the enclosing appender.
00:39:4800:39:48,376 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Setting the "immediateFlush" property of the enclosing appender to true
00:39:4800:39:48,377 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:39:4800:39:48,377 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:39:4800:39:48,377 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:39:4800:39:48,377 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:39:4800:39:48,377 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:39:4800:39:48,377 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:39:4800:39:48,378 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@abe3a3 - End of configuration.
00:39:4800:39:48,380 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@396ab19d - Registering current configuration as safe fallback point
00:39:4800:39:48,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:39:4800:39:48lifecycle.test-compile:
00:39:48Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:48warning: [options] bootstrap class path not set in conjunction with -source 8
00:39:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:49import omero.grid.RawAccessRequest;
00:39:49 ^
00:39:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:50import omero.grid.RawAccessRequest;
00:39:50 ^
00:39:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:50import omero.grid.RawAccessRequest;
00:39:50 ^
00:39:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:50import omero.model.ImportJob;
00:39:50 ^
00:39:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:50import omero.model.ImportJobI;
00:39:50 ^
00:39:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:39:50 IObject link = (IObject) linkClass.newInstance();
00:39:50 ^
00:39:50 where T is a type-variable:
00:39:50 T extends Object declared in class Class
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:39:51 T copy = (T) obj.getClass().newInstance();
00:39:51 ^
00:39:51 where T is a type-variable:
00:39:51 T extends Object declared in class Class
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:51 RawAccessRequest raw = new RawAccessRequest();
00:39:51 ^
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:51 RawAccessRequest raw = new RawAccessRequest();
00:39:51 ^
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:51 raw.repoUuid = legacy.root().getHash().getValue();
00:39:51 ^
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:51 raw.command = "rm";
00:39:51 ^
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:51 raw.args = Arrays.asList(path);
00:39:51 ^
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:39:51 final IObject link = linkClass.newInstance();
00:39:51 ^
00:39:51 where T is a type-variable:
00:39:51 T extends Object declared in class Class
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:39:51 originalLink.setChild(annotationClass.newInstance());
00:39:51 ^
00:39:51 where T is a type-variable:
00:39:51 T extends Object declared in class Class
00:39:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:51 RoiResult r = svc.findByImage(id, new RoiOptions());
00:39:51 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:52 final RawAccessRequest request = new RawAccessRequest();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:52 final RawAccessRequest request = new RawAccessRequest();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:52 request.repoUuid = repo.root().getHash().getValue();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:52 request.command = "exists";
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:52 request.args = Collections.singletonList(dirPath);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:52 final RawAccessRequest request = new RawAccessRequest();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:52 final RawAccessRequest request = new RawAccessRequest();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:52 request.repoUuid = repo.root().getHash().getValue();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:52 request.command = "exists";
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:52 request.args = Collections.singletonList(dirName);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:52 final ImportJob importJob = new ImportJobI();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:52 final ImportJob importJob = new ImportJobI();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:39:52 importJob.setImageName(omero.rtypes.rstring(name));
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:39:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:52 final String savedName = sent.getImageName().getValue().toString();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:52 final String savedDesc = sent.getImageDescription().getValue().toString();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:39:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:39:52 table = svc.getTable(f.getId().getValue());
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:39:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:52 svc.getShapeStatsRestricted(
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:39:52 ^
00:39:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:52 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:53 p2.setRelatedTo(p1);
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:53 pixels1.setRelatedTo(pixels2);
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:53 Pixels pixels = pixels1.getRelatedTo();
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:53 Assert.assertNull(pixels1.getRelatedTo());
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:53 pixels1.setRelatedTo(pixels2);
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:53 Pixels pixels = pixels1.getRelatedTo();
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:53 Assert.assertNull(pixels1.getRelatedTo());
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:53 ^
00:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:53 ^
00:39:53Note: Some input files use unchecked or unsafe operations.
00:39:53Note: Recompile with -Xlint:unchecked for details.
00:39:5388 warnings
00:39:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_194824182.tmp
00:39:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:39:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:53:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-55e5784f22-ice36-b381 :: integration :: Sun Apr 13 00:39:45 UTC 2025
00:39:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:39:53:: publishing :: omero#OmeroJava-test
00:39:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-55e5784f22-ice36-b381.jar
00:39:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-55e5784f22-ice36-b381.xml
00:39:5300:39:53build-eclipse:
00:39:53No sub-builds to iterate on
00:39:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:5300:39:53retrieve:
00:39:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:5700:39:57prepare:
00:39:57Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:5800:39:58release-clients:
00:39:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-55e5784f22-ice36-b381.zip
00:40:0500:40:05release-zip:
00:40:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-55e5784f22-ice36-b381.zip
00:40:1800:40:18BUILD SUCCESSFUL
00:40:18Total time: 1 minute 11 seconds
00:40:18++ '[' -d .git ']'
00:40:18++ python3 ./build.py release-src
00:40:18Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:1900:40:19release-src-git:
00:40:19Releasing openmicroscopy-5.6.3-552-55e5784f22-ice36-b381
00:40:20 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-55e5784f22-ice36-b381.zip
00:40:20 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-55e5784f22-ice36-b381-base.zip
00:40:2200:40:22BUILD SUCCESSFUL
00:40:22Total time: 3 seconds
00:40:22++ echo BUILD_NUMBER=381
00:40:22++ echo OMERO_BRANCH=merge_ci
00:40:22++ git_info
00:40:22+++ git rev-parse HEAD
00:40:22++ HEAD=55e5784f22b4b1e3accb40c36c22275224685165
00:40:22++ git log --max-count=1 55e5784f22b4b1e3accb40c36c22275224685165
00:40:22++ env
00:40:22++ sort
00:40:22Archiving artifacts
00:40:50Finished: SUCCESS
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