10:59:28Started by user devspace10:59:28Running as SYSTEM
10:59:28Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:59:28The recommended git tool is: NONE
10:59:28No credentials specified
10:59:28 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:59:28Fetching changes from the remote Git repository
10:59:28 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:59:28Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:59:28 > git --version # timeout=10
10:59:28 > git --version # 'git version 2.52.0'
10:59:28 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:59:33 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:59:33Checking out Revision 1621d09097275b1b6ee9bfacfa6789a52c39ab29 (origin/merge_ci)
10:59:33 > git config core.sparsecheckout # timeout=10
10:59:33 > git checkout -f 1621d09097275b1b6ee9bfacfa6789a52c39ab29 # timeout=10
10:59:36Commit message: "Add version.properties to etc/omero.properties"
10:59:36 > git rev-list --no-walk 6bc27fde44617064fa0186f9bfef89fe29a18511 # timeout=10
10:59:36Cleaning workspace
10:59:36 > git rev-parse --verify HEAD # timeout=10
10:59:36Resetting working tree
10:59:36 > git reset --hard # timeout=10
10:59:36 > git clean -fdx # timeout=10
11:00:11Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3211:00:11[OMERO-build] $ /bin/bash -xe /tmp/jenkins14069740397374985011.sh
11:00:11+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
11:00:11+ cd src
11:00:11+ export OMERO_BRANCH=merge_ci
11:00:11+ OMERO_BRANCH=merge_ci
11:00:11+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:00:11+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:00:39+ source /home/omero/settings.env
11:00:39++ OMERO_DB_HOST=pg
11:00:39++ OMERO_DB_USER=postgres
11:00:39++ OMERO_DB_PASS=
11:00:39++ OMERO_ROOT_PASS=omero
11:00:39++ OMERO_DATA_DIR=/OMERO
11:00:39++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:00:39+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:01:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:01:05Collecting zeroc-ice==3.6.5
11:01:06 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:01:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 3.0 MB/s eta 0:00:00
11:01:11Installing collected packages: zeroc-ice
11:01:15Successfully installed zeroc-ice-3.6.5
11:01:1511:01:15[notice] A new release of pip available: 22.3.1 -> 26.2
11:01:15[notice] To update, run: python3.11 -m pip install --upgrade pip
11:01:15+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:01:16Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:01:16Collecting setuptools<66
11:01:16 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:01:17Collecting omero-py
11:01:17 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
11:01:17Collecting appdirs
11:01:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:01:17Collecting future
11:01:17 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:01:18Collecting numpy<3,>=2
11:01:18 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
11:01:18Collecting Pillow>=10.0.0
11:01:19 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
11:01:19Collecting PyYAML
11:01:19 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:01:19Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:01:19Collecting requests
11:01:19 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
11:01:19Collecting portalocker
11:01:19 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
11:01:20Collecting charset_normalizer<4,>=2
11:01:20 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
11:01:20Collecting idna<4,>=2.5
11:01:20 Using cached idna-3.18-py3-none-any.whl (65 kB)
11:01:20Collecting urllib3<3,>=1.26
11:01:20 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
11:01:20Collecting certifi>=2023.5.7
11:01:20 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
11:01:20Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
11:01:23 Attempting uninstall: setuptools
11:01:23 Found existing installation: setuptools 65.5.1
11:01:24 Uninstalling setuptools-65.5.1:
11:01:24 Successfully uninstalled setuptools-65.5.1
11:02:27Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
11:02:2711:02:27[notice] A new release of pip available: 22.3.1 -> 26.2
11:02:27[notice] To update, run: python3.11 -m pip install --upgrade pip
11:02:27+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:02:27++ deactivate nondestructive
11:02:27++ '[' -n '' ']'
11:02:27++ '[' -n '' ']'
11:02:27++ hash -r
11:02:27++ '[' -n '' ']'
11:02:27++ unset VIRTUAL_ENV
11:02:27++ unset VIRTUAL_ENV_PROMPT
11:02:27++ '[' '!' nondestructive = nondestructive ']'
11:02:27++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:02:27++ export VIRTUAL_ENV
11:02:27++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:02:27++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:02:27++ export PATH
11:02:27++ '[' -n '' ']'
11:02:27++ '[' -z '' ']'
11:02:27++ _OLD_VIRTUAL_PS1=
11:02:27++ PS1='(omero-virtualenv) '
11:02:27++ export PS1
11:02:27++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:02:27++ export VIRTUAL_ENV_PROMPT
11:02:27++ hash -r
11:02:27+ source docs/hudson/OMERO.sh
11:02:27++ set -e
11:02:27++ set -u
11:02:27++ set -x
11:02:27++ source docs/hudson/functions.sh
11:02:27++ echo Building merge_ci
11:02:27Building merge_ci
11:02:27++ python3 ./build.py build-dev release-all
11:02:27Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:02:2811:02:28check-ivy:
11:02:28Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:02:28Created dir: /home/omero/workspace/OMERO-build/src/target
11:02:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:02:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:02:3011:02:30build-scons:
11:02:30Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:02:32No sub-builds to iterate on
11:02:32Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:02:3311:02:33buildlist:
11:02:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:02:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:02:3311:02:33clean:
11:02:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:02:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:02:3411:02:34python-clean:
11:02:34WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:02:34/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-642-1621d09097-ice36-b39') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:02:34 warnings.warn(
11:02:34running clean
11:02:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:02:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:02:3511:02:35python-clean:
11:02:35WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:02:35/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-642-1621d09097-ice36-b39') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:02:35 warnings.warn(
11:02:35running clean
11:02:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:02:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:02:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:02:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:02:3611:02:36python-clean:
11:02:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:02:36/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-642-1621d09097-ice36-b39') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:02:36 warnings.warn(
11:02:36running clean
11:02:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:02:36Deleting directory /home/omero/workspace/OMERO-build/src/target
11:02:3811:02:38build-scons:
11:02:38Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:02:3911:02:39build:
11:02:39No sub-builds to iterate on
11:02:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:02:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:02:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:02:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:02:4111:02:41tools-init:
11:02:41no-op
11:02:4111:02:41retrieve:
11:02:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:02:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:03:3111:03:31prepare:
11:03:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:03:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:03:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:03:3111:03:31pre-compile:
11:03:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:03:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:03:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:03:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:03:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:03:4811:03:48compile:
11:03:48no-op
11:03:4911:03:49package:
11:03:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:03:5311:03:53install:
11:03:53:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-642-1621d09097-ice36-b39 :: integration :: Fri Aug 07 11:02:40 UTC 2026
11:03:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:03:53:: publishing :: omero#omero_client
11:03:53 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-642-1621d09097-ice36-b39/omero_client-5.6.3-642-1621d09097-ice36-b39.jar
11:03:53 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-642-1621d09097-ice36-b39/omero_client-5.6.3-642-1621d09097-ice36-b39.xml
11:03:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:03:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:03:5411:03:54retrieve:
11:03:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:03:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:03:55Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:03:5511:03:55dist:
11:03:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:03:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:03:55Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:03:55Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:03:56Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:03:56Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:03:56Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:03:57Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:03:57Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:03:5811:03:58copy-licenses:
11:03:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:03:58Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:03:58Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:03:5911:03:59copy-history:
11:03:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:03:5911:03:59copy-etc:
11:03:59Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:03:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:03:5911:03:59copy-sql:
11:03:59Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:04:1111:04:11copy-server:
11:04:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
11:04:1711:04:17copy-client:
11:04:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:04:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
11:04:2511:04:25update-version:
11:04:25Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:04:2511:04:25create-workdirs:
11:04:25Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:04:25Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:04:25Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
11:04:2511:04:25copy-luts:
11:04:25Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:04:25Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:04:2611:04:26test-compile:
11:04:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:04:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:04:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:04:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:04:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:04:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:04:28Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:04:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:04:2911:04:29testng-init:
11:04:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:04:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:04:3711:04:37,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
11:04:3711:04:37,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - No custom configurators were discovered as a service.
11:04:3711:04:37,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:04:3711:04:37,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:04:3711:04:37,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:04:3711:04:37,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:04:3711:04:37,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:04:3711:04:37,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:04:3711:04:37,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:04:3711:04:37,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:04:3711:04:37,411 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:04:3711:04:37,413 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39ad5a7d - Resource [logback.xml] occurs multiple times on the classpath.
11:04:3711:04:37,413 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39ad5a7d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:04:3711:04:37,413 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39ad5a7d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:04:3711:04:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:04:3711:04:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:04:3711:04:37,667 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:04:3711:04:37,669 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1492c9d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:04:3711:04:37,669 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1492c9d - Please move "immediateFlush" property into the enclosing appender.
11:04:3711:04:37,742 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1492c9d - Setting the "immediateFlush" property of the enclosing appender to true
11:04:3711:04:37,743 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:04:3711:04:37,743 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:04:3711:04:37,743 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:04:3711:04:37,743 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:04:3711:04:37,743 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:04:3711:04:37,743 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:04:3711:04:37,744 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@24df8abf - End of configuration.
11:04:3711:04:37,747 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@390d47db - Registering current configuration as safe fallback point
11:04:3711:04:37,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f385ee9 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:04:3711:04:37lifecycle.test-compile:
11:04:37Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:04:37Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:04:38warning: [options] bootstrap class path not set in conjunction with -source 8
11:04:38warning: [options] source value 8 is obsolete and will be removed in a future release
11:04:38warning: [options] target value 8 is obsolete and will be removed in a future release
11:04:38warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
11:04:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:40import omero.grid.RawAccessRequest;
11:04:40 ^
11:04:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:40import omero.grid.RawAccessRequest;
11:04:40 ^
11:04:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:40import omero.grid.RawAccessRequest;
11:04:40 ^
11:04:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:40import omero.model.ImportJob;
11:04:40 ^
11:04:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:04:40import omero.model.ImportJobI;
11:04:40 ^
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:04:41 IObject link = (IObject) linkClass.newInstance();
11:04:41 ^
11:04:41 where T is a type-variable:
11:04:41 T extends Object declared in class Class
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:04:41 T copy = (T) obj.getClass().newInstance();
11:04:41 ^
11:04:41 where T is a type-variable:
11:04:41 T extends Object declared in class Class
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:41 RawAccessRequest raw = new RawAccessRequest();
11:04:41 ^
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:41 RawAccessRequest raw = new RawAccessRequest();
11:04:41 ^
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:04:41 raw.repoUuid = legacy.root().getHash().getValue();
11:04:41 ^
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:04:41 raw.command = "rm";
11:04:41 ^
11:04:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:04:41 raw.args = Arrays.asList(path);
11:04:41 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:04:42 final IObject link = linkClass.newInstance();
11:04:42 ^
11:04:42 where T is a type-variable:
11:04:42 T extends Object declared in class Class
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:04:42 originalLink.setChild(annotationClass.newInstance());
11:04:42 ^
11:04:42 where T is a type-variable:
11:04:42 T extends Object declared in class Class
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:04:42 RoiResult r = svc.findByImage(id, new RoiOptions());
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:42 final RawAccessRequest request = new RawAccessRequest();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:42 final RawAccessRequest request = new RawAccessRequest();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:04:42 request.repoUuid = repo.root().getHash().getValue();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:04:42 request.command = "exists";
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:04:42 request.args = Collections.singletonList(dirPath);
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:42 final RawAccessRequest request = new RawAccessRequest();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:04:42 final RawAccessRequest request = new RawAccessRequest();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:04:42 request.repoUuid = repo.root().getHash().getValue();
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:04:42 request.command = "exists";
11:04:42 ^
11:04:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:04:42 request.args = Collections.singletonList(dirName);
11:04:42 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:43 final ImportJob importJob = new ImportJobI();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:04:43 final ImportJob importJob = new ImportJobI();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:04:43 importJob.setImageName(omero.rtypes.rstring(name));
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:04:43 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:04:43 final String savedName = sent.getImageName().getValue().toString();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:04:43 final String savedDesc = sent.getImageDescription().getValue().toString();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:04:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:04:43 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:04:43 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 RoiResult r = svc.findByImage(image.getId().getValue(),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:04:43 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:04:43 table = svc.getTable(f.getId().getValue());
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 RoiResult r = svc.findByImage(image.getId().getValue(),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:04:43 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:04:43 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:04:43 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
11:04:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:04:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:04:43 svc.getShapeStatsRestricted(
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:04:43 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:04:43 ^
11:04:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:04:43 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:04:43 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:04:44 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:04:44 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:04:44 request.typesToIgnore = Collections.singletonList("Annotation");
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:04:44 request.typesToIgnore = Collections.singletonList("Annotation");
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:04:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:04:44 p2.setRelatedTo(p1);
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:04:44 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:04:44 pixels1.setRelatedTo(pixels2);
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:04:44 Pixels pixels = pixels1.getRelatedTo();
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:04:44 Assert.assertNull(pixels1.getRelatedTo());
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:04:44 pixels1.setRelatedTo(pixels2);
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:04:44 Pixels pixels = pixels1.getRelatedTo();
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:04:44 Assert.assertNull(pixels1.getRelatedTo());
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:04:44 ^
11:04:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:04:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:04:44 ^
11:04:44Note: Some input files use unchecked or unsafe operations.
11:04:44Note: Recompile with -Xlint:unchecked for details.
11:04:4491 warnings
11:04:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1595849099.tmp
11:04:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:04:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:04:45:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-642-1621d09097-ice36-b39 :: integration :: Fri Aug 07 11:04:28 UTC 2026
11:04:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:04:45:: publishing :: omero#OmeroJava-test
11:04:45 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-642-1621d09097-ice36-b39.jar
11:04:45 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-642-1621d09097-ice36-b39.xml
11:04:4511:04:45build-eclipse:
11:04:45No sub-builds to iterate on
11:04:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:04:4611:04:46retrieve:
11:04:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:04:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:04:5011:04:50prepare:
11:04:50Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:04:5611:04:56release-clients:
11:04:56Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-642-1621d09097-ice36-b39.zip
11:05:0211:05:02release-zip:
11:05:02Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-642-1621d09097-ice36-b39.zip
11:05:1611:05:16BUILD SUCCESSFUL
11:05:16Total time: 2 minutes 49 seconds
11:05:16++ '[' -d .git ']'
11:05:16++ python3 ./build.py release-src
11:05:16Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:05:1811:05:18release-src-git:
11:05:18Releasing openmicroscopy-5.6.3-642-1621d09097-ice36-b39
11:05:24 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:05:24 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-642-1621d09097-ice36-b39-base.zip
11:05:2611:05:26BUILD SUCCESSFUL
11:05:26Total time: 9 seconds
11:05:26++ echo BUILD_NUMBER=39
11:05:26++ echo OMERO_BRANCH=merge_ci
11:05:26++ git_info
11:05:26+++ git rev-parse HEAD
11:05:26++ HEAD=1621d09097275b1b6ee9bfacfa6789a52c39ab29
11:05:26++ git log --max-count=1 1621d09097275b1b6ee9bfacfa6789a52c39ab29
11:05:26++ env
11:05:26++ sort
11:05:26Archiving artifacts
11:05:45Finished: SUCCESS
