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12:57:50 Started by upstream project "Trigger" build number 48
12:57:50 originally caused by:
12:57:50  Started by user devspace
12:57:50 Running as SYSTEM
12:57:50 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:57:50 The recommended git tool is: NONE
12:57:50 No credentials specified
12:57:50  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:57:50 Fetching changes from the remote Git repository
12:57:50  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:57:50 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
12:57:50  > git --version # timeout=10
12:57:50  > git --version # 'git version 2.52.0'
12:57:50  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:57:54  > git rev-parse origin/merge_ci^{commit} # timeout=10
12:57:54 Checking out Revision 31b44fa9ea86ab6bdef129b034bf760fced4d3fc (origin/merge_ci)
12:57:54  > git config core.sparsecheckout # timeout=10
12:57:54  > git checkout -f 31b44fa9ea86ab6bdef129b034bf760fced4d3fc # timeout=10
12:57:58 Commit message: "Add version.properties to etc/omero.properties"
12:57:58  > git rev-list --no-walk 1621d09097275b1b6ee9bfacfa6789a52c39ab29 # timeout=10
12:57:58 Cleaning workspace
12:57:58  > git rev-parse --verify HEAD # timeout=10
12:57:58 Resetting working tree
12:57:58  > git reset --hard # timeout=10
12:57:58  > git clean -fdx # timeout=10
12:58:22 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 33
12:58:23 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7941345674215263169.sh
12:58:23 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
12:58:23 + cd src
12:58:23 + export OMERO_BRANCH=merge_ci
12:58:23 + OMERO_BRANCH=merge_ci
12:58:23 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:58:23 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:58:47 + source /home/omero/settings.env
12:58:47 ++ OMERO_DB_HOST=pg
12:58:47 ++ OMERO_DB_USER=postgres
12:58:47 ++ OMERO_DB_PASS=
12:58:47 ++ OMERO_ROOT_PASS=omero
12:58:47 ++ OMERO_DATA_DIR=/OMERO
12:58:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:58:47 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:59:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:59:07 Collecting zeroc-ice==3.6.5
12:59:08   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:59:11      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
12:59:11 Installing collected packages: zeroc-ice
12:59:14 Successfully installed zeroc-ice-3.6.5
12:59:14 
12:59:14 [notice] A new release of pip available: 22.3.1 -> 26.2
12:59:14 [notice] To update, run: python3.11 -m pip install --upgrade pip
12:59:14 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:59:15 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:59:16 Collecting setuptools<66
12:59:16   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:59:16 Collecting omero-py
12:59:16   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
12:59:16 Collecting appdirs
12:59:16   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:59:16 Collecting future
12:59:16   Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:59:17 Collecting numpy<3,>=2
12:59:17   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:59:18 Collecting Pillow>=10.0.0
12:59:18   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:59:18 Collecting PyYAML
12:59:18   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:59:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:59:18 Collecting requests
12:59:18   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:59:18 Collecting portalocker
12:59:18   Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
12:59:19 Collecting charset_normalizer<4,>=2
12:59:19   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:59:19 Collecting idna<4,>=2.5
12:59:19   Using cached idna-3.18-py3-none-any.whl (65 kB)
12:59:19 Collecting urllib3<3,>=1.26
12:59:19   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:59:19 Collecting certifi>=2023.5.7
12:59:19   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
12:59:19 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:59:20   Attempting uninstall: setuptools
12:59:20     Found existing installation: setuptools 65.5.1
12:59:21     Uninstalling setuptools-65.5.1:
12:59:21       Successfully uninstalled setuptools-65.5.1
13:00:15 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
13:00:15 
13:00:15 [notice] A new release of pip available: 22.3.1 -> 26.2
13:00:15 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:00:15 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
13:00:15 ++ deactivate nondestructive
13:00:15 ++ '[' -n '' ']'
13:00:15 ++ '[' -n '' ']'
13:00:15 ++ hash -r
13:00:15 ++ '[' -n '' ']'
13:00:15 ++ unset VIRTUAL_ENV
13:00:15 ++ unset VIRTUAL_ENV_PROMPT
13:00:15 ++ '[' '!' nondestructive = nondestructive ']'
13:00:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
13:00:15 ++ export VIRTUAL_ENV
13:00:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:00:15 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:00:15 ++ export PATH
13:00:15 ++ '[' -n '' ']'
13:00:15 ++ '[' -z '' ']'
13:00:15 ++ _OLD_VIRTUAL_PS1=
13:00:15 ++ PS1='(omero-virtualenv) '
13:00:15 ++ export PS1
13:00:15 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
13:00:15 ++ export VIRTUAL_ENV_PROMPT
13:00:15 ++ hash -r
13:00:15 + source docs/hudson/OMERO.sh
13:00:15 ++ set -e
13:00:15 ++ set -u
13:00:15 ++ set -x
13:00:15 ++ source docs/hudson/functions.sh
13:00:15 ++ echo Building merge_ci
13:00:15 Building merge_ci
13:00:15 ++ python3 ./build.py build-dev release-all
13:00:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:00:16 
13:00:16 check-ivy:
13:00:16 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:00:16 Created dir: /home/omero/workspace/OMERO-build/src/target
13:00:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:00:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:00:18 
13:00:18 build-scons:
13:00:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:00:20 No sub-builds to iterate on
13:00:20 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:00:21 
13:00:21 buildlist:
13:00:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:00:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:00:21 
13:00:21 clean:
13:00:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:00:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:00:22 
13:00:22 python-clean:
13:00:22 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:00:22 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-31b44fa9ea-ice36-b40') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:00:22   warnings.warn(
13:00:22 running clean
13:00:22 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:00:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:00:23 
13:00:23 python-clean:
13:00:23 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:00:23 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-31b44fa9ea-ice36-b40') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:00:23   warnings.warn(
13:00:23 running clean
13:00:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:00:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:00:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:00:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:00:24 
13:00:24 python-clean:
13:00:24 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:00:24 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-31b44fa9ea-ice36-b40') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:00:24   warnings.warn(
13:00:24 running clean
13:00:24 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:00:24 Deleting directory /home/omero/workspace/OMERO-build/src/target
13:00:25 
13:00:25 build-scons:
13:00:25 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:00:27 
13:00:27 build:
13:00:27 No sub-builds to iterate on
13:00:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:00:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:00:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:00:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:00:28 
13:00:28 tools-init:
13:00:28 no-op
13:00:29 
13:00:29 retrieve:
13:00:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:00:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:44 
13:01:44 prepare:
13:01:44 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:01:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:01:44 
13:01:44 pre-compile:
13:01:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:01:46 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:01:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:01:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:02:00 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:02:02 
13:02:02 compile:
13:02:02 no-op
13:02:03 
13:02:03 package:
13:02:03 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:02:06 
13:02:06 install:
13:02:06 :: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-31b44fa9ea-ice36-b40 :: integration :: Fri Aug 07 13:00:28 UTC 2026
13:02:06 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:02:06 :: publishing :: omero#omero_client
13:02:06 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-31b44fa9ea-ice36-b40/omero_client-5.6.3-643-31b44fa9ea-ice36-b40.jar
13:02:06 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-31b44fa9ea-ice36-b40/omero_client-5.6.3-643-31b44fa9ea-ice36-b40.xml
13:02:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:02:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:02:07 
13:02:07 retrieve:
13:02:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:02:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:02:08 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:02:08 
13:02:08 dist:
13:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:02:09 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:02:09 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:02:09 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:02:10 Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:02:10 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:02:11 
13:02:11 copy-licenses:
13:02:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:02:11 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:02:11 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:02:11 
13:02:11 copy-history:
13:02:11 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:02:11 
13:02:11 copy-etc:
13:02:11 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:02:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:02:12 
13:02:12 copy-sql:
13:02:12 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:02:24 
13:02:24 copy-server:
13:02:24 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
13:02:30 
13:02:30 copy-client:
13:02:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:02:34 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
13:02:39 
13:02:39 update-version:
13:02:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:02:39 
13:02:39 create-workdirs:
13:02:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:02:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:02:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
13:02:39 
13:02:39 copy-luts:
13:02:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:02:39 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:02:39 
13:02:39 test-compile:
13:02:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:02:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:02:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:02:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:02:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:02:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:02:41 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:02:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:02:42 
13:02:42 testng-init:
13:02:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:02:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:02:50 13:02:50,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
13:02:50 13:02:50,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
13:02:50 13:02:50,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:02:50 13:02:50,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:02:50 13:02:50,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:02:50 13:02:50,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:02:50 13:02:50,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:02:50 13:02:50,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:02:50 13:02:50,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:02:50 13:02:50,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:02:50 13:02:50,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:02:50 13:02:50,202 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
13:02:50 13:02:50,202 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:02:50 13:02:50,202 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:02:50 13:02:50,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:02:50 13:02:50,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:02:50 13:02:50,461 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:02:50 13:02:50,464 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:02:50 13:02:50,464 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
13:02:50 13:02:50,537 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
13:02:50 13:02:50,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:02:50 13:02:50,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:02:50 13:02:50,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:02:50 13:02:50,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:02:50 13:02:50,538 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:02:50 13:02:50,539 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:02:50 13:02:50,540 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
13:02:50 13:02:50,542 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
13:02:50 13:02:50,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 346 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:02:50 
13:02:50 lifecycle.test-compile:
13:02:50 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:02:50 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:02:51 warning: [options] bootstrap class path not set in conjunction with -source 8
13:02:51 warning: [options] source value 8 is obsolete and will be removed in a future release
13:02:51 warning: [options] target value 8 is obsolete and will be removed in a future release
13:02:51 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
13:02:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:52 import omero.grid.RawAccessRequest;
13:02:52                  ^
13:02:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:53 import omero.grid.RawAccessRequest;
13:02:53                  ^
13:02:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:53 import omero.grid.RawAccessRequest;
13:02:53                  ^
13:02:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:53 import omero.model.ImportJob;
13:02:53                   ^
13:02:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:02:53 import omero.model.ImportJobI;
13:02:53                   ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:02:54         IObject link = (IObject) linkClass.newInstance();
13:02:54                                           ^
13:02:54   where T is a type-variable:
13:02:54     T extends Object declared in class Class
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:02:54         T copy = (T) obj.getClass().newInstance();
13:02:54                                    ^
13:02:54   where T is a type-variable:
13:02:54     T extends Object declared in class Class
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:54         RawAccessRequest raw = new RawAccessRequest();
13:02:54         ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:54         RawAccessRequest raw = new RawAccessRequest();
13:02:54                                    ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:02:54         raw.repoUuid = legacy.root().getHash().getValue();
13:02:54            ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:02:54         raw.command = "rm";
13:02:54            ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:02:54         raw.args = Arrays.asList(path);
13:02:54            ^
13:02:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:02:54         final IObject link = linkClass.newInstance();
13:02:54                                       ^
13:02:54   where T is a type-variable:
13:02:54     T extends Object declared in class Class
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:02:55             originalLink.setChild(annotationClass.newInstance());
13:02:55                                                  ^
13:02:55   where T is a type-variable:
13:02:55     T extends Object declared in class Class
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:02:55         RoiResult r = svc.findByImage(id, new RoiOptions());
13:02:55                          ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:55         final RawAccessRequest request = new RawAccessRequest();
13:02:55               ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:55         final RawAccessRequest request = new RawAccessRequest();
13:02:55                                              ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:02:55         request.repoUuid = repo.root().getHash().getValue();
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:02:55         request.command = "exists";
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:02:55         request.args = Collections.singletonList(dirPath);
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:55         final RawAccessRequest request = new RawAccessRequest();
13:02:55               ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:02:55         final RawAccessRequest request = new RawAccessRequest();
13:02:55                                              ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:02:55         request.repoUuid = repo.root().getHash().getValue();
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:02:55         request.command = "exists";
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:02:55         request.args = Collections.singletonList(dirName);
13:02:55                ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:55         final ImportJob importJob = new ImportJobI();
13:02:55               ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:02:55         final ImportJob importJob = new ImportJobI();
13:02:55                                         ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:02:55         importJob.setImageName(omero.rtypes.rstring(name));
13:02:55                  ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:02:55         importJob.setImageDescription(omero.rtypes.rstring(desc));
13:02:55                  ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:55         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:02:55         ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:55         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:02:55                           ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:02:55         final String savedName = sent.getImageName().getValue().toString();
13:02:55                                      ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:02:55         final String savedDesc = sent.getImageDescription().getValue().toString();
13:02:55                                      ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:55         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:02:55               ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:02:55         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:02:55                                               ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:02:55         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:02:55                                                        ^
13:02:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:02:55         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:02:55                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         RoiResult r = svc.findByImage(image.getId().getValue(),
13:02:56                          ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:02:56                                 ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:02:56                                 ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:02:56         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:02:56                                          ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:02:56                                 ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:02:56         table = svc.getTable(f.getId().getValue());
13:02:56                    ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         RoiResult r = svc.findByImage(image.getId().getValue(),
13:02:56                          ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:02:56         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:02:56         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:02:56         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:02:56                ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:02:56                   ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:02:56                                   ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:02:56                                    ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:02:56                                                    ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
13:02:56             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:02:56                                       ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:02:56                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:02:56                                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:02:56                                                         ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:02:56                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:02:56                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:02:56                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:02:56         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:02:56                                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:02:56                 svc.getShapeStatsRestricted(
13:02:56                    ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:02:56         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:02:56                                        ^
13:02:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:02:56         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:02:56                                      ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:02:57         request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:02:57         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:02:57         request.typesToIgnore = Collections.singletonList("Annotation");
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:02:57                     request.typesToIgnore = Collections.singletonList("Annotation");
13:02:57                            ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:02:57         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:02:57                                      ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:02:57         p2.setRelatedTo(p1);
13:02:57           ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:02:57         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:02:57                                           ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:02:57         pixels1.setRelatedTo(pixels2);
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:02:57         Pixels pixels = pixels1.getRelatedTo();
13:02:57                                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:02:57         Assert.assertNull(pixels1.getRelatedTo());
13:02:57                                  ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:02:57         pixels1.setRelatedTo(pixels2);
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:02:57         Pixels pixels = pixels1.getRelatedTo();
13:02:57                                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:02:57         Assert.assertNull(pixels1.getRelatedTo());
13:02:57                                  ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:57         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:02:57                                 ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:57         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:02:57                ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:57         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:02:57                                 ^
13:02:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:02:57         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:02:57                ^
13:02:57 Note: Some input files use unchecked or unsafe operations.
13:02:57 Note: Recompile with -Xlint:unchecked for details.
13:02:57 91 warnings
13:02:57 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1529806880.tmp
13:02:57 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:02:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:02:58 :: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-31b44fa9ea-ice36-b40 :: integration :: Fri Aug 07 13:02:41 UTC 2026
13:02:58 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:02:58 :: publishing :: omero#OmeroJava-test
13:02:58 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-31b44fa9ea-ice36-b40.jar
13:02:58 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-31b44fa9ea-ice36-b40.xml
13:02:58 
13:02:58 build-eclipse:
13:02:58 No sub-builds to iterate on
13:02:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:02:59 
13:02:59 retrieve:
13:02:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:02:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:03:03 
13:03:03 prepare:
13:03:03 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:03:07 
13:03:07 release-clients:
13:03:07 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-31b44fa9ea-ice36-b40.zip
13:03:13 
13:03:13 release-zip:
13:03:13 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-31b44fa9ea-ice36-b40.zip
13:03:24 
13:03:24 BUILD SUCCESSFUL
13:03:24 Total time: 3 minutes 8 seconds
13:03:24 ++ '[' -d .git ']'
13:03:24 ++ python3 ./build.py release-src
13:03:25 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:03:26 
13:03:26 release-src-git:
13:03:26 Releasing openmicroscopy-5.6.3-643-31b44fa9ea-ice36-b40
13:03:27   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-31b44fa9ea-ice36-b40.zip
13:03:27   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-31b44fa9ea-ice36-b40-base.zip
13:03:29 
13:03:29 BUILD SUCCESSFUL
13:03:29 Total time: 4 seconds
13:03:29 ++ echo BUILD_NUMBER=40
13:03:29 ++ echo OMERO_BRANCH=merge_ci
13:03:29 ++ git_info
13:03:29 +++ git rev-parse HEAD
13:03:29 ++ HEAD=31b44fa9ea86ab6bdef129b034bf760fced4d3fc
13:03:29 ++ git log --max-count=1 31b44fa9ea86ab6bdef129b034bf760fced4d3fc
13:03:29 ++ env
13:03:29 ++ sort
13:03:29 Archiving artifacts
13:03:46 Finished: SUCCESS