01:21:46Started by upstream project "Trigger" build number 4901:21:46originally caused by:
01:21:46 Started by timer
01:21:46Running as SYSTEM
01:21:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:21:46The recommended git tool is: NONE
01:21:46No credentials specified
01:21:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:21:46Fetching changes from the remote Git repository
01:21:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:21:46Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:21:46 > git --version # timeout=10
01:21:46 > git --version # 'git version 2.52.0'
01:21:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:21:51 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:21:51Checking out Revision 6b1553d6d9a6135b813af6ae08c54a852513f308 (origin/merge_ci)
01:21:51 > git config core.sparsecheckout # timeout=10
01:21:51 > git checkout -f 6b1553d6d9a6135b813af6ae08c54a852513f308 # timeout=10
01:21:54Commit message: "Add version.properties to etc/omero.properties"
01:21:54 > git rev-list --no-walk 31b44fa9ea86ab6bdef129b034bf760fced4d3fc # timeout=10
01:21:54Cleaning workspace
01:21:54 > git rev-parse --verify HEAD # timeout=10
01:21:54Resetting working tree
01:21:54 > git reset --hard # timeout=10
01:21:54 > git clean -fdx # timeout=10
01:22:22Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3401:22:23[OMERO-build] $ /bin/bash -xe /tmp/jenkins17045571014150485321.sh
01:22:23+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:22:23+ cd src
01:22:23+ export OMERO_BRANCH=merge_ci
01:22:23+ OMERO_BRANCH=merge_ci
01:22:23+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:22:23+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:22:49+ source /home/omero/settings.env
01:22:49++ OMERO_DB_HOST=pg
01:22:49++ OMERO_DB_USER=postgres
01:22:49++ OMERO_DB_PASS=
01:22:49++ OMERO_ROOT_PASS=omero
01:22:49++ OMERO_DATA_DIR=/OMERO
01:22:49++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:22:49+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:23:09+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:23:10Collecting zeroc-ice==3.6.5
01:23:11 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:23:14 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
01:23:14Installing collected packages: zeroc-ice
01:23:18Successfully installed zeroc-ice-3.6.5
01:23:1801:23:18[notice] A new release of pip available: 22.3.1 -> 26.2
01:23:18[notice] To update, run: python3.11 -m pip install --upgrade pip
01:23:18+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:23:19Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:23:19Collecting setuptools<66
01:23:19 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:23:19Collecting omero-py
01:23:19 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:23:20Collecting appdirs
01:23:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:23:20Collecting future
01:23:20 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:23:20Collecting numpy<3,>=2
01:23:20 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:23:21Collecting Pillow>=10.0.0
01:23:21 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:23:21Collecting PyYAML
01:23:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:23:21Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:23:22Collecting requests
01:23:22 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:23:22Collecting portalocker
01:23:22 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:23:22Collecting charset_normalizer<4,>=2
01:23:22 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:23:22Collecting idna<4,>=2.5
01:23:22 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:23:22Collecting urllib3<3,>=1.26
01:23:23 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:23:23Collecting certifi>=2023.5.7
01:23:23 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:23:23Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:23:24 Attempting uninstall: setuptools
01:23:24 Found existing installation: setuptools 65.5.1
01:23:25 Uninstalling setuptools-65.5.1:
01:23:25 Successfully uninstalled setuptools-65.5.1
01:24:18Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:24:1801:24:18[notice] A new release of pip available: 22.3.1 -> 26.2
01:24:18[notice] To update, run: python3.11 -m pip install --upgrade pip
01:24:18+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:24:18++ deactivate nondestructive
01:24:18++ '[' -n '' ']'
01:24:18++ '[' -n '' ']'
01:24:18++ hash -r
01:24:18++ '[' -n '' ']'
01:24:18++ unset VIRTUAL_ENV
01:24:18++ unset VIRTUAL_ENV_PROMPT
01:24:18++ '[' '!' nondestructive = nondestructive ']'
01:24:18++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:24:18++ export VIRTUAL_ENV
01:24:18++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:24:18++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:24:18++ export PATH
01:24:18++ '[' -n '' ']'
01:24:18++ '[' -z '' ']'
01:24:18++ _OLD_VIRTUAL_PS1=
01:24:18++ PS1='(omero-virtualenv) '
01:24:18++ export PS1
01:24:18++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:24:18++ export VIRTUAL_ENV_PROMPT
01:24:18++ hash -r
01:24:18+ source docs/hudson/OMERO.sh
01:24:18++ set -e
01:24:18++ set -u
01:24:18++ set -x
01:24:18++ source docs/hudson/functions.sh
01:24:18++ echo Building merge_ci
01:24:18Building merge_ci
01:24:18++ python3 ./build.py build-dev release-all
01:24:18Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:24:1901:24:19check-ivy:
01:24:19Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:24:19Created dir: /home/omero/workspace/OMERO-build/src/target
01:24:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:24:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:2101:24:21build-scons:
01:24:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:24:23No sub-builds to iterate on
01:24:23Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:24:2401:24:24buildlist:
01:24:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:24:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:2401:24:24clean:
01:24:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:24:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:24:2501:24:25python-clean:
01:24:25WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:24:25/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6b1553d6d9-ice36-b41') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:24:25 warnings.warn(
01:24:25running clean
01:24:25Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:24:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:24:2601:24:26python-clean:
01:24:26WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:24:26/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6b1553d6d9-ice36-b41') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:24:26 warnings.warn(
01:24:26running clean
01:24:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:24:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:24:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:2801:24:28python-clean:
01:24:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:24:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6b1553d6d9-ice36-b41') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:24:28 warnings.warn(
01:24:28running clean
01:24:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:24:28Deleting directory /home/omero/workspace/OMERO-build/src/target
01:24:2901:24:29build-scons:
01:24:29Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:24:3101:24:31build:
01:24:31No sub-builds to iterate on
01:24:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:24:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:24:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:24:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:24:3201:24:32tools-init:
01:24:32no-op
01:24:3301:24:33retrieve:
01:24:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:24:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:2401:25:24prepare:
01:25:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:25:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:25:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:25:2401:25:24pre-compile:
01:25:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:25:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:25:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:25:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:25:4201:25:42compile:
01:25:42no-op
01:25:4201:25:42package:
01:25:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:25:4601:25:46install:
01:25:46:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-6b1553d6d9-ice36-b41 :: integration :: Sat Aug 08 01:24:32 UTC 2026
01:25:46 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:25:46:: publishing :: omero#omero_client
01:25:46 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-6b1553d6d9-ice36-b41/omero_client-5.6.3-643-6b1553d6d9-ice36-b41.jar
01:25:46 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-6b1553d6d9-ice36-b41/omero_client-5.6.3-643-6b1553d6d9-ice36-b41.xml
01:25:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:4701:25:47retrieve:
01:25:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:48Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:25:4801:25:48dist:
01:25:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:25:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:25:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:25:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:25:49Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:25:49Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:25:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:25:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:25:51Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:25:5201:25:52copy-licenses:
01:25:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:25:52Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:25:52Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:25:5201:25:52copy-history:
01:25:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:25:5201:25:52copy-etc:
01:25:52Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:25:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:25:5301:25:53copy-sql:
01:25:53Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:26:0601:26:06copy-server:
01:26:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:26:1201:26:12copy-client:
01:26:12Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:26:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:26:2001:26:20update-version:
01:26:20Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:26:2001:26:20create-workdirs:
01:26:20Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:26:20Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:26:20Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:26:2001:26:20copy-luts:
01:26:20Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:26:20Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:26:2001:26:20test-compile:
01:26:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:23Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:26:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:2301:26:23testng-init:
01:26:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:3201:26:31,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:26:3201:26:31,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
01:26:3201:26:31,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:26:3201:26:31,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:26:3201:26:31,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:26:3201:26:31,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:26:3201:26:31,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:26:3201:26:31,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:26:3201:26:31,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:26:3201:26:31,870 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:26:3201:26:31,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:26:3201:26:31,873 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
01:26:3201:26:31,873 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:26:3201:26:31,873 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:26:3201:26:32,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:26:3201:26:32,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:26:3201:26:32,128 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:26:3201:26:32,130 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:26:3201:26:32,130 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
01:26:3201:26:32,202 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
01:26:3201:26:32,203 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:26:3201:26:32,204 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:26:3201:26:32,204 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:26:3201:26:32,204 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:26:3201:26:32,204 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:26:3201:26:32,204 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:26:3201:26:32,205 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
01:26:3201:26:32,207 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
01:26:3201:26:32,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:26:3201:26:32lifecycle.test-compile:
01:26:32Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:26:32Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:26:32warning: [options] bootstrap class path not set in conjunction with -source 8
01:26:32warning: [options] source value 8 is obsolete and will be removed in a future release
01:26:32warning: [options] target value 8 is obsolete and will be removed in a future release
01:26:32warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:26:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:34import omero.grid.RawAccessRequest;
01:26:34 ^
01:26:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:34import omero.grid.RawAccessRequest;
01:26:34 ^
01:26:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:35import omero.grid.RawAccessRequest;
01:26:35 ^
01:26:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:35import omero.model.ImportJob;
01:26:35 ^
01:26:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:26:35import omero.model.ImportJobI;
01:26:35 ^
01:26:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:26:35 IObject link = (IObject) linkClass.newInstance();
01:26:35 ^
01:26:35 where T is a type-variable:
01:26:35 T extends Object declared in class Class
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:26:36 T copy = (T) obj.getClass().newInstance();
01:26:36 ^
01:26:36 where T is a type-variable:
01:26:36 T extends Object declared in class Class
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:36 RawAccessRequest raw = new RawAccessRequest();
01:26:36 ^
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:36 RawAccessRequest raw = new RawAccessRequest();
01:26:36 ^
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:26:36 raw.repoUuid = legacy.root().getHash().getValue();
01:26:36 ^
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:26:36 raw.command = "rm";
01:26:36 ^
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:26:36 raw.args = Arrays.asList(path);
01:26:36 ^
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:26:36 final IObject link = linkClass.newInstance();
01:26:36 ^
01:26:36 where T is a type-variable:
01:26:36 T extends Object declared in class Class
01:26:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:26:36 originalLink.setChild(annotationClass.newInstance());
01:26:36 ^
01:26:36 where T is a type-variable:
01:26:36 T extends Object declared in class Class
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:26:37 RoiResult r = svc.findByImage(id, new RoiOptions());
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:37 final RawAccessRequest request = new RawAccessRequest();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:37 final RawAccessRequest request = new RawAccessRequest();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:26:37 request.repoUuid = repo.root().getHash().getValue();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:26:37 request.command = "exists";
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:26:37 request.args = Collections.singletonList(dirPath);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:37 final RawAccessRequest request = new RawAccessRequest();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:26:37 final RawAccessRequest request = new RawAccessRequest();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:26:37 request.repoUuid = repo.root().getHash().getValue();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:26:37 request.command = "exists";
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:26:37 request.args = Collections.singletonList(dirName);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:37 final ImportJob importJob = new ImportJobI();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:26:37 final ImportJob importJob = new ImportJobI();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:26:37 importJob.setImageName(omero.rtypes.rstring(name));
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:26:37 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:26:37 final String savedName = sent.getImageName().getValue().toString();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:26:37 final String savedDesc = sent.getImageDescription().getValue().toString();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:26:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:26:37 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:26:37 ^
01:26:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:26:37 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:26:37 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 RoiResult r = svc.findByImage(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:26:38 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:26:38 table = svc.getTable(f.getId().getValue());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 RoiResult r = svc.findByImage(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:26:38 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:26:38 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:26:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:26:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:26:38 svc.getShapeStatsRestricted(
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:26:38 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:26:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:26:38 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:26:38 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:26:38 request.typesToIgnore = Collections.singletonList("Annotation");
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:26:38 request.typesToIgnore = Collections.singletonList("Annotation");
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:26:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:26:38 p2.setRelatedTo(p1);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:26:38 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:26:38 pixels1.setRelatedTo(pixels2);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:26:38 Pixels pixels = pixels1.getRelatedTo();
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:26:38 Assert.assertNull(pixels1.getRelatedTo());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:26:38 pixels1.setRelatedTo(pixels2);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:26:38 Pixels pixels = pixels1.getRelatedTo();
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:26:38 Assert.assertNull(pixels1.getRelatedTo());
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:26:38 ^
01:26:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:26:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:26:38 ^
01:26:39Note: Some input files use unchecked or unsafe operations.
01:26:39Note: Recompile with -Xlint:unchecked for details.
01:26:3991 warnings
01:26:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1578393787.tmp
01:26:39Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:26:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:39:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-6b1553d6d9-ice36-b41 :: integration :: Sat Aug 08 01:26:23 UTC 2026
01:26:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:26:39:: publishing :: omero#OmeroJava-test
01:26:39 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-6b1553d6d9-ice36-b41.jar
01:26:39 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-6b1553d6d9-ice36-b41.xml
01:26:3901:26:39build-eclipse:
01:26:39No sub-builds to iterate on
01:26:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:4001:26:40retrieve:
01:26:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:4501:26:45prepare:
01:26:45Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:26:4901:26:49release-clients:
01:26:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-6b1553d6d9-ice36-b41.zip
01:26:5501:26:55release-zip:
01:26:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-6b1553d6d9-ice36-b41.zip
01:27:0701:27:07BUILD SUCCESSFUL
01:27:07Total time: 2 minutes 48 seconds
01:27:07++ '[' -d .git ']'
01:27:07++ python3 ./build.py release-src
01:27:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:27:0801:27:08release-src-git:
01:27:08Releasing openmicroscopy-5.6.3-643-6b1553d6d9-ice36-b41
01:27:10 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-6b1553d6d9-ice36-b41.zip
01:27:10 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-6b1553d6d9-ice36-b41-base.zip
01:27:1201:27:12BUILD SUCCESSFUL
01:27:12Total time: 4 seconds
01:27:12++ echo BUILD_NUMBER=41
01:27:12++ echo OMERO_BRANCH=merge_ci
01:27:12++ git_info
01:27:12+++ git rev-parse HEAD
01:27:12++ HEAD=6b1553d6d9a6135b813af6ae08c54a852513f308
01:27:12++ git log --max-count=1 6b1553d6d9a6135b813af6ae08c54a852513f308
01:27:12++ env
01:27:12++ sort
01:27:12Archiving artifacts
01:27:29Finished: SUCCESS
