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09:42:52 Started by upstream project "Trigger" build number 62
09:42:52 originally caused by:
09:42:52  Started by user devspace
09:42:52 Running as SYSTEM
09:42:52 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:42:52 The recommended git tool is: NONE
09:42:52 No credentials specified
09:42:52  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:42:52 Fetching changes from the remote Git repository
09:42:52  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:42:52 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
09:42:52  > git --version # timeout=10
09:42:52  > git --version # 'git version 2.52.0'
09:42:52  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:43:00  > git rev-parse origin/merge_ci^{commit} # timeout=10
09:43:00 Checking out Revision 4199fa2d41eab6b6aa98d00b701b7cd6bf007c40 (origin/merge_ci)
09:43:00  > git config core.sparsecheckout # timeout=10
09:43:00  > git checkout -f 4199fa2d41eab6b6aa98d00b701b7cd6bf007c40 # timeout=10
09:43:17 Commit message: "Add version.properties to etc/omero.properties"
09:43:17  > git rev-list --no-walk d3d3500e72bedba69b2e7adc2935edd8d60c9375 # timeout=10
09:43:17 Cleaning workspace
09:43:17  > git rev-parse --verify HEAD # timeout=10
09:43:17 Resetting working tree
09:43:17  > git reset --hard # timeout=10
09:43:18  > git clean -fdx # timeout=10
09:43:47 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 45
09:43:47 [OMERO-build] $ /bin/bash -xe /tmp/jenkins16563670586153766118.sh
09:43:47 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:43:47 + cd src
09:43:47 + export OMERO_BRANCH=merge_ci
09:43:47 + OMERO_BRANCH=merge_ci
09:43:47 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:43:47 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:44:17 + source /home/omero/settings.env
09:44:17 ++ OMERO_DB_HOST=pg
09:44:17 ++ OMERO_DB_USER=postgres
09:44:17 ++ OMERO_DB_PASS=
09:44:17 ++ OMERO_ROOT_PASS=omero
09:44:17 ++ OMERO_DATA_DIR=/OMERO
09:44:17 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:44:17 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:44:39 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:44:40 Collecting zeroc-ice==3.6.5
09:44:40   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:44:43      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.1 MB/s eta 0:00:00
09:44:43 Installing collected packages: zeroc-ice
09:44:47 Successfully installed zeroc-ice-3.6.5
09:44:47 
09:44:47 [notice] A new release of pip available: 22.3.1 -> 26.2.1
09:44:47 [notice] To update, run: python3.11 -m pip install --upgrade pip
09:44:47 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:44:48 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:44:48 Collecting setuptools<66
09:44:48   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:44:49 Collecting omero-py
09:44:49   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
09:44:49 Collecting appdirs
09:44:49   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:44:49 Collecting future
09:44:49   Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:44:50 Collecting numpy<3,>=2
09:44:50   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:44:50 Collecting Pillow>=10.0.0
09:44:50   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:44:51 Collecting PyYAML
09:44:51   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:44:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:44:51 Collecting requests
09:44:51   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:44:51 Collecting portalocker
09:44:51   Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
09:44:52 Collecting charset_normalizer<4,>=2
09:44:52   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
09:44:52 Collecting idna<4,>=2.5
09:44:52   Downloading idna-3.19-py3-none-any.whl (68 kB)
09:44:52      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 68.5/68.5 kB 1.3 MB/s eta 0:00:00
09:44:52 Collecting urllib3<3,>=1.26
09:44:52   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
09:44:52 Collecting certifi>=2023.5.7
09:44:52   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
09:44:53 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:44:54   Attempting uninstall: setuptools
09:44:54     Found existing installation: setuptools 65.5.1
09:44:54     Uninstalling setuptools-65.5.1:
09:44:55       Successfully uninstalled setuptools-65.5.1
09:45:46 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
09:45:46 
09:45:46 [notice] A new release of pip available: 22.3.1 -> 26.2.1
09:45:46 [notice] To update, run: python3.11 -m pip install --upgrade pip
09:45:46 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:45:46 ++ deactivate nondestructive
09:45:46 ++ '[' -n '' ']'
09:45:46 ++ '[' -n '' ']'
09:45:46 ++ hash -r
09:45:46 ++ '[' -n '' ']'
09:45:46 ++ unset VIRTUAL_ENV
09:45:46 ++ unset VIRTUAL_ENV_PROMPT
09:45:46 ++ '[' '!' nondestructive = nondestructive ']'
09:45:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:45:46 ++ export VIRTUAL_ENV
09:45:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:46 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:46 ++ export PATH
09:45:46 ++ '[' -n '' ']'
09:45:46 ++ '[' -z '' ']'
09:45:46 ++ _OLD_VIRTUAL_PS1=
09:45:46 ++ PS1='(omero-virtualenv) '
09:45:46 ++ export PS1
09:45:46 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:45:46 ++ export VIRTUAL_ENV_PROMPT
09:45:46 ++ hash -r
09:45:46 + source docs/hudson/OMERO.sh
09:45:46 ++ set -e
09:45:46 ++ set -u
09:45:46 ++ set -x
09:45:46 ++ source docs/hudson/functions.sh
09:45:46 ++ echo Building merge_ci
09:45:46 Building merge_ci
09:45:46 ++ python3 ./build.py build-dev release-all
09:45:46 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:45:47 
09:45:47 check-ivy:
09:45:47 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:45:47 Created dir: /home/omero/workspace/OMERO-build/src/target
09:45:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:45:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:45:49 
09:45:49 build-scons:
09:45:49 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:45:51 No sub-builds to iterate on
09:45:51 Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:45:52 
09:45:52 buildlist:
09:45:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:45:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:45:52 
09:45:52 clean:
09:45:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:45:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:45:53 
09:45:53 python-clean:
09:45:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:45:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-655-4199fa2d41-ice36-b52') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:45:53   warnings.warn(
09:45:53 running clean
09:45:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:45:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:45:54 
09:45:54 python-clean:
09:45:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:45:54 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-655-4199fa2d41-ice36-b52') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:45:54   warnings.warn(
09:45:54 running clean
09:45:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:45:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:45:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:45:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:45:55 
09:45:55 python-clean:
09:45:55 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:45:55 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-655-4199fa2d41-ice36-b52') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:45:55   warnings.warn(
09:45:55 running clean
09:45:55 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:45:55 Deleting directory /home/omero/workspace/OMERO-build/src/target
09:45:57 
09:45:57 build-scons:
09:45:57 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:45:58 
09:45:58 build:
09:45:58 No sub-builds to iterate on
09:45:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:45:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:45:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:46:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:46:00 
09:46:00 tools-init:
09:46:00 no-op
09:46:00 
09:46:00 retrieve:
09:46:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:46:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:17 
09:47:17 prepare:
09:47:17 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:47:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:47:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:47:17 
09:47:17 pre-compile:
09:47:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:27 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:32 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:32 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:47:35 
09:47:35 compile:
09:47:35 no-op
09:47:35 
09:47:35 package:
09:47:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:47:39 
09:47:39 install:
09:47:39 :: delivering :: omero#omero_client;working@cd3952d915be :: 5.6.3-655-4199fa2d41-ice36-b52 :: integration :: Wed Aug 19 09:45:59 UTC 2026
09:47:39 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:47:39 :: publishing :: omero#omero_client
09:47:39 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-655-4199fa2d41-ice36-b52/omero_client-5.6.3-655-4199fa2d41-ice36-b52.jar
09:47:39 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-655-4199fa2d41-ice36-b52/omero_client-5.6.3-655-4199fa2d41-ice36-b52.xml
09:47:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:47:40 
09:47:40 retrieve:
09:47:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:47:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:47:41 Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:47:41 
09:47:41 dist:
09:47:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:47:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:47:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:47:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:47:42 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:47:42 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:47:42 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:47:43 Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:47:43 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:47:44 
09:47:44 copy-licenses:
09:47:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:47:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:47:44 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:47:45 
09:47:45 copy-history:
09:47:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:47:45 
09:47:45 copy-etc:
09:47:45 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:47:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:47:45 
09:47:45 copy-sql:
09:47:45 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:47:57 
09:47:57 copy-server:
09:47:57 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:48:03 
09:48:03 copy-client:
09:48:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:48:07 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:48:12 
09:48:12 update-version:
09:48:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:48:12 
09:48:12 create-workdirs:
09:48:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:48:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:48:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:48:12 
09:48:12 copy-luts:
09:48:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:48:12 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:48:12 
09:48:12 test-compile:
09:48:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:48:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:48:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:48:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:48:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:48:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:48:14 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:48:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:48:15 
09:48:15 testng-init:
09:48:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:48:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:48:24 09:48:23,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:48:24 09:48:23,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
09:48:24 09:48:23,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:48:24 09:48:23,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:48:24 09:48:23,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:48:24 09:48:23,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:48:24 09:48:23,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:48:24 09:48:23,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:48:24 09:48:23,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:48:24 09:48:23,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:48:24 09:48:23,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:48:24 09:48:23,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
09:48:24 09:48:23,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:48:24 09:48:23,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:48:24 09:48:24,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:48:24 09:48:24,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:48:24 09:48:24,244 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:48:24 09:48:24,246 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:48:24 09:48:24,246 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
09:48:24 09:48:24,318 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:48:24 09:48:24,319 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:48:24 09:48:24,320 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
09:48:24 09:48:24,323 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
09:48:24 09:48:24,323 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:48:24 
09:48:24 lifecycle.test-compile:
09:48:24 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:48:24 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:48:24 warning: [options] bootstrap class path not set in conjunction with -source 8
09:48:24 warning: [options] source value 8 is obsolete and will be removed in a future release
09:48:24 warning: [options] target value 8 is obsolete and will be removed in a future release
09:48:24 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
09:48:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:26 import omero.grid.RawAccessRequest;
09:48:26                  ^
09:48:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:27 import omero.grid.RawAccessRequest;
09:48:27                  ^
09:48:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:27 import omero.grid.RawAccessRequest;
09:48:27                  ^
09:48:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:27 import omero.model.ImportJob;
09:48:27                   ^
09:48:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:48:27 import omero.model.ImportJobI;
09:48:27                   ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:48:28         IObject link = (IObject) linkClass.newInstance();
09:48:28                                           ^
09:48:28   where T is a type-variable:
09:48:28     T extends Object declared in class Class
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:48:28         T copy = (T) obj.getClass().newInstance();
09:48:28                                    ^
09:48:28   where T is a type-variable:
09:48:28     T extends Object declared in class Class
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:28         RawAccessRequest raw = new RawAccessRequest();
09:48:28         ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:28         RawAccessRequest raw = new RawAccessRequest();
09:48:28                                    ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:48:28         raw.repoUuid = legacy.root().getHash().getValue();
09:48:28            ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:48:28         raw.command = "rm";
09:48:28            ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:48:28         raw.args = Arrays.asList(path);
09:48:28            ^
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:48:28         final IObject link = linkClass.newInstance();
09:48:28                                       ^
09:48:28   where T is a type-variable:
09:48:28     T extends Object declared in class Class
09:48:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:48:28             originalLink.setChild(annotationClass.newInstance());
09:48:28                                                  ^
09:48:28   where T is a type-variable:
09:48:28     T extends Object declared in class Class
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:48:29         RoiResult r = svc.findByImage(id, new RoiOptions());
09:48:29                          ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:29         final RawAccessRequest request = new RawAccessRequest();
09:48:29               ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:29         final RawAccessRequest request = new RawAccessRequest();
09:48:29                                              ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:48:29         request.repoUuid = repo.root().getHash().getValue();
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:48:29         request.command = "exists";
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:48:29         request.args = Collections.singletonList(dirPath);
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:29         final RawAccessRequest request = new RawAccessRequest();
09:48:29               ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:48:29         final RawAccessRequest request = new RawAccessRequest();
09:48:29                                              ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:48:29         request.repoUuid = repo.root().getHash().getValue();
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:48:29         request.command = "exists";
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:48:29         request.args = Collections.singletonList(dirName);
09:48:29                ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:29         final ImportJob importJob = new ImportJobI();
09:48:29               ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:48:29         final ImportJob importJob = new ImportJobI();
09:48:29                                         ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:48:29         importJob.setImageName(omero.rtypes.rstring(name));
09:48:29                  ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:48:29         importJob.setImageDescription(omero.rtypes.rstring(desc));
09:48:29                  ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:29         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:48:29         ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:29         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:48:29                           ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:48:29         final String savedName = sent.getImageName().getValue().toString();
09:48:29                                      ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:48:29         final String savedDesc = sent.getImageDescription().getValue().toString();
09:48:29                                      ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:29         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:48:29               ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:48:29         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:48:29                                               ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:48:29         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:48:29                                                        ^
09:48:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:48:29         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:48:29                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         RoiResult r = svc.findByImage(image.getId().getValue(),
09:48:30                          ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:48:30                                 ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:48:30                                 ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:48:30         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:48:30                                          ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:48:30                                 ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:48:30         table = svc.getTable(f.getId().getValue());
09:48:30                    ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         RoiResult r = svc.findByImage(image.getId().getValue(),
09:48:30                          ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:48:30         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:48:30         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:48:30         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:48:30                ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:48:30                   ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:48:30                                   ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:48:30                                    ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:48:30                                                    ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
09:48:30             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:48:30                                       ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:48:30                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:48:30                                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:48:30                                                         ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:48:30                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:48:30                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:48:30                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:48:30         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:48:30                                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:48:30                 svc.getShapeStatsRestricted(
09:48:30                    ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:48:30         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:48:30                                        ^
09:48:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:48:30         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:48:30                                      ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:48:31         request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:48:31         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:48:31         request.typesToIgnore = Collections.singletonList("Annotation");
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:48:31                     request.typesToIgnore = Collections.singletonList("Annotation");
09:48:31                            ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:48:31         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:48:31                                      ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:48:31         p2.setRelatedTo(p1);
09:48:31           ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:48:31         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:48:31                                           ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:48:31         pixels1.setRelatedTo(pixels2);
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:48:31         Pixels pixels = pixels1.getRelatedTo();
09:48:31                                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:48:31         Assert.assertNull(pixels1.getRelatedTo());
09:48:31                                  ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:48:31         pixels1.setRelatedTo(pixels2);
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:48:31         Pixels pixels = pixels1.getRelatedTo();
09:48:31                                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:48:31         Assert.assertNull(pixels1.getRelatedTo());
09:48:31                                  ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:31         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:48:31                                 ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:31         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:48:31                ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:31         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:48:31                                 ^
09:48:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:48:31         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:48:31                ^
09:48:31 Note: Some input files use unchecked or unsafe operations.
09:48:31 Note: Recompile with -Xlint:unchecked for details.
09:48:31 91 warnings
09:48:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2141793585.tmp
09:48:31 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:48:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:48:31 :: delivering :: omero#OmeroJava-test;working@cd3952d915be :: 5.6.3-655-4199fa2d41-ice36-b52 :: integration :: Wed Aug 19 09:48:14 UTC 2026
09:48:31 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:48:32 :: publishing :: omero#OmeroJava-test
09:48:32 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-655-4199fa2d41-ice36-b52.jar
09:48:32 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-655-4199fa2d41-ice36-b52.xml
09:48:32 
09:48:32 build-eclipse:
09:48:32 No sub-builds to iterate on
09:48:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:48:33 
09:48:33 retrieve:
09:48:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:48:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:48:37 
09:48:37 prepare:
09:48:37 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:48:41 
09:48:41 release-clients:
09:48:41 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-655-4199fa2d41-ice36-b52.zip
09:48:47 
09:48:47 release-zip:
09:48:47 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-655-4199fa2d41-ice36-b52.zip
09:48:58 
09:48:58 BUILD SUCCESSFUL
09:48:58 Total time: 3 minutes 12 seconds
09:48:58 ++ '[' -d .git ']'
09:48:58 ++ python3 ./build.py release-src
09:48:59 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:49:00 
09:49:00 release-src-git:
09:49:00 Releasing openmicroscopy-5.6.3-655-4199fa2d41-ice36-b52
09:49:01   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-655-4199fa2d41-ice36-b52.zip
09:49:01   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-655-4199fa2d41-ice36-b52-base.zip
09:49:03 
09:49:03 BUILD SUCCESSFUL
09:49:03 Total time: 4 seconds
09:49:03 ++ echo BUILD_NUMBER=52
09:49:03 ++ echo OMERO_BRANCH=merge_ci
09:49:03 ++ git_info
09:49:03 +++ git rev-parse HEAD
09:49:03 ++ HEAD=4199fa2d41eab6b6aa98d00b701b7cd6bf007c40
09:49:03 ++ git log --max-count=1 4199fa2d41eab6b6aa98d00b701b7cd6bf007c40
09:49:03 ++ env
09:49:03 ++ sort
09:49:03 Archiving artifacts
09:49:19 Finished: SUCCESS