01:23:25Started by upstream project "Trigger" build number 6301:23:25originally caused by:
01:23:25 Started by timer
01:23:25Running as SYSTEM
01:23:25Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:23:25The recommended git tool is: NONE
01:23:25No credentials specified
01:23:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:23:25Fetching changes from the remote Git repository
01:23:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:23:25Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:23:25 > git --version # timeout=10
01:23:25 > git --version # 'git version 2.52.0'
01:23:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:23:34 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:23:34Checking out Revision c1da4cac7b0e3a50783e16bd0988ce42de6d5982 (origin/merge_ci)
01:23:34 > git config core.sparsecheckout # timeout=10
01:23:34 > git checkout -f c1da4cac7b0e3a50783e16bd0988ce42de6d5982 # timeout=10
01:23:51Commit message: "Add version.properties to etc/omero.properties"
01:23:51 > git rev-list --no-walk 4199fa2d41eab6b6aa98d00b701b7cd6bf007c40 # timeout=10
01:23:51Cleaning workspace
01:23:51 > git rev-parse --verify HEAD # timeout=10
01:23:51Resetting working tree
01:23:51 > git reset --hard # timeout=10
01:23:52 > git clean -fdx # timeout=10
01:24:18Copied 6 artifacts from "OMERO-python-superbuild-build" build number 4601:24:19[OMERO-build] $ /bin/bash -xe /tmp/jenkins4775173103311978338.sh
01:24:19+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:24:19+ cd src
01:24:19+ export OMERO_BRANCH=merge_ci
01:24:19+ OMERO_BRANCH=merge_ci
01:24:19+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:24:19+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:24:44+ source /home/omero/settings.env
01:24:44++ OMERO_DB_HOST=pg
01:24:44++ OMERO_DB_USER=postgres
01:24:44++ OMERO_DB_PASS=
01:24:44++ OMERO_ROOT_PASS=omero
01:24:44++ OMERO_DATA_DIR=/OMERO
01:24:44++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:24:44+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:25:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:25:05Collecting zeroc-ice==3.6.5
01:25:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:25:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00
01:25:08Installing collected packages: zeroc-ice
01:25:11Successfully installed zeroc-ice-3.6.5
01:25:1201:25:12[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:25:12[notice] To update, run: python3.11 -m pip install --upgrade pip
01:25:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:25:13Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:25:13Collecting setuptools<66
01:25:13 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:25:13Collecting omero-py
01:25:13 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:25:13Collecting appdirs
01:25:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:25:14Collecting future
01:25:14 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:25:14Collecting numpy<3,>=2
01:25:14 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:25:15Collecting Pillow>=10.0.0
01:25:15 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:25:15Collecting PyYAML
01:25:15 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:25:15Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:25:16Collecting requests
01:25:16 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:25:16Collecting portalocker
01:25:16 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:25:16Collecting charset_normalizer<4,>=2
01:25:16 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
01:25:16Collecting idna<4,>=2.5
01:25:16 Using cached idna-3.19-py3-none-any.whl (68 kB)
01:25:17Collecting urllib3<3,>=1.26
01:25:17 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:25:17Collecting certifi>=2023.5.7
01:25:17 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:25:17Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:25:18 Attempting uninstall: setuptools
01:25:18 Found existing installation: setuptools 65.5.1
01:25:19 Uninstalling setuptools-65.5.1:
01:25:19 Successfully uninstalled setuptools-65.5.1
01:26:08Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:26:0801:26:08[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:26:08[notice] To update, run: python3.11 -m pip install --upgrade pip
01:26:08+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:26:08++ deactivate nondestructive
01:26:08++ '[' -n '' ']'
01:26:08++ '[' -n '' ']'
01:26:08++ hash -r
01:26:08++ '[' -n '' ']'
01:26:08++ unset VIRTUAL_ENV
01:26:08++ unset VIRTUAL_ENV_PROMPT
01:26:08++ '[' '!' nondestructive = nondestructive ']'
01:26:08++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:26:08++ export VIRTUAL_ENV
01:26:08++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:26:08++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:26:08++ export PATH
01:26:08++ '[' -n '' ']'
01:26:08++ '[' -z '' ']'
01:26:08++ _OLD_VIRTUAL_PS1=
01:26:08++ PS1='(omero-virtualenv) '
01:26:08++ export PS1
01:26:08++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:26:08++ export VIRTUAL_ENV_PROMPT
01:26:08++ hash -r
01:26:08+ source docs/hudson/OMERO.sh
01:26:08++ set -e
01:26:08++ set -u
01:26:08++ set -x
01:26:08++ source docs/hudson/functions.sh
01:26:08++ echo Building merge_ci
01:26:08Building merge_ci
01:26:08++ python3 ./build.py build-dev release-all
01:26:09Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:26:1001:26:10check-ivy:
01:26:10Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:26:10Created dir: /home/omero/workspace/OMERO-build/src/target
01:26:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:1201:26:12build-scons:
01:26:12Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:26:13No sub-builds to iterate on
01:26:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:26:1401:26:14buildlist:
01:26:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:1401:26:14clean:
01:26:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:1601:26:16python-clean:
01:26:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-656-c1da4cac7b-ice36-b53') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:16 warnings.warn(
01:26:16running clean
01:26:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:26:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:26:1701:26:17python-clean:
01:26:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-656-c1da4cac7b-ice36-b53') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:17 warnings.warn(
01:26:17running clean
01:26:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:26:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:1801:26:18python-clean:
01:26:18WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:18/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-656-c1da4cac7b-ice36-b53') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:18 warnings.warn(
01:26:18running clean
01:26:18Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:26:18Deleting directory /home/omero/workspace/OMERO-build/src/target
01:26:1901:26:19build-scons:
01:26:19Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:26:2101:26:21build:
01:26:21No sub-builds to iterate on
01:26:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:26:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:2301:26:23tools-init:
01:26:23no-op
01:26:2301:26:23retrieve:
01:26:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:0601:27:06prepare:
01:27:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:27:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:0701:27:07pre-compile:
01:27:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:2301:27:23compile:
01:27:23no-op
01:27:2301:27:23package:
01:27:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:27:2701:27:27install:
01:27:27:: delivering :: omero#omero_client;working@8bdefdc8cc5f :: 5.6.3-656-c1da4cac7b-ice36-b53 :: integration :: Thu Aug 20 01:26:22 UTC 2026
01:27:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:27:27:: publishing :: omero#omero_client
01:27:27 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-656-c1da4cac7b-ice36-b53/omero_client-5.6.3-656-c1da4cac7b-ice36-b53.jar
01:27:27 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-656-c1da4cac7b-ice36-b53/omero_client-5.6.3-656-c1da4cac7b-ice36-b53.xml
01:27:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:2901:27:29retrieve:
01:27:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:29Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:27:2901:27:29dist:
01:27:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:27:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:27:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:27:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:27:30Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:27:30Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:27:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:27:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:27:32Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:27:3301:27:33copy-licenses:
01:27:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:27:33Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:27:33Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:27:3301:27:33copy-history:
01:27:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:27:3301:27:33copy-etc:
01:27:33Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:27:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:27:3401:27:34copy-sql:
01:27:34Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:27:4601:27:46copy-server:
01:27:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:27:5101:27:51copy-client:
01:27:51Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:27:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:28:0001:28:00update-version:
01:28:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:28:0001:28:00create-workdirs:
01:28:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:28:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:28:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:28:0001:28:00copy-luts:
01:28:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:28:00Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:28:0001:28:00test-compile:
01:28:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:02Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:28:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:0301:28:03testng-init:
01:28:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:1101:28:11,586 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:28:1101:28:11,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:28:1101:28:11,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:28:1101:28:11,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:28:1101:28:11,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:28:1101:28:11,600 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:28:1101:28:11,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:28:1101:28:11,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:28:1101:28:11,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:28:1101:28:11,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:28:1101:28:11,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:28:1101:28:11,608 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:28:1101:28:11,608 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:28:1101:28:11,608 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:28:1101:28:11,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:28:1101:28:11,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:28:1101:28:11,884 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:28:1101:28:11,886 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:28:1101:28:11,886 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:28:1101:28:11,965 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:28:1101:28:11,966 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:28:1101:28:11,966 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:28:1101:28:11,966 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:28:1101:28:11,966 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:28:1101:28:11,966 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:28:1101:28:11,966 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:28:1101:28:11,967 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:28:1101:28:11,970 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:28:1101:28:11,970 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:28:1101:28:11lifecycle.test-compile:
01:28:11Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:12Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:12warning: [options] bootstrap class path not set in conjunction with -source 8
01:28:12warning: [options] source value 8 is obsolete and will be removed in a future release
01:28:12warning: [options] target value 8 is obsolete and will be removed in a future release
01:28:12warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:14import omero.grid.RawAccessRequest;
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:14import omero.grid.RawAccessRequest;
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:14import omero.grid.RawAccessRequest;
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:14import omero.model.ImportJob;
01:28:14 ^
01:28:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:28:14import omero.model.ImportJobI;
01:28:14 ^
01:28:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:28:15 IObject link = (IObject) linkClass.newInstance();
01:28:15 ^
01:28:15 where T is a type-variable:
01:28:15 T extends Object declared in class Class
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:28:16 T copy = (T) obj.getClass().newInstance();
01:28:16 ^
01:28:16 where T is a type-variable:
01:28:16 T extends Object declared in class Class
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:16 RawAccessRequest raw = new RawAccessRequest();
01:28:16 ^
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:16 RawAccessRequest raw = new RawAccessRequest();
01:28:16 ^
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:16 raw.repoUuid = legacy.root().getHash().getValue();
01:28:16 ^
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:16 raw.command = "rm";
01:28:16 ^
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:16 raw.args = Arrays.asList(path);
01:28:16 ^
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:28:16 final IObject link = linkClass.newInstance();
01:28:16 ^
01:28:16 where T is a type-variable:
01:28:16 T extends Object declared in class Class
01:28:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:28:16 originalLink.setChild(annotationClass.newInstance());
01:28:16 ^
01:28:16 where T is a type-variable:
01:28:16 T extends Object declared in class Class
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:17 RoiResult r = svc.findByImage(id, new RoiOptions());
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:17 final RawAccessRequest request = new RawAccessRequest();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:17 final RawAccessRequest request = new RawAccessRequest();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:17 request.repoUuid = repo.root().getHash().getValue();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:17 request.command = "exists";
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:17 request.args = Collections.singletonList(dirPath);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:17 final RawAccessRequest request = new RawAccessRequest();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:28:17 final RawAccessRequest request = new RawAccessRequest();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:28:17 request.repoUuid = repo.root().getHash().getValue();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:28:17 request.command = "exists";
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:28:17 request.args = Collections.singletonList(dirName);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:17 final ImportJob importJob = new ImportJobI();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:28:17 final ImportJob importJob = new ImportJobI();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:28:17 importJob.setImageName(omero.rtypes.rstring(name));
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:28:17 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:17 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:17 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:28:17 final String savedName = sent.getImageName().getValue().toString();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:28:17 final String savedDesc = sent.getImageDescription().getValue().toString();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:17 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:28:17 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:28:17 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:28:17 ^
01:28:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:28:17 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:28:17 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 RoiResult r = svc.findByImage(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:28:18 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:28:18 table = svc.getTable(f.getId().getValue());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 RoiResult r = svc.findByImage(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:28:18 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:28:18 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:28:18 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:28:18 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:28:18 svc.getShapeStatsRestricted(
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:28:18 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:18 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:18 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:18 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:18 request.typesToIgnore = Collections.singletonList("Annotation");
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:28:18 request.typesToIgnore = Collections.singletonList("Annotation");
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:18 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:18 p2.setRelatedTo(p1);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:18 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:18 pixels1.setRelatedTo(pixels2);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:18 Pixels pixels = pixels1.getRelatedTo();
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:18 Assert.assertNull(pixels1.getRelatedTo());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:28:18 pixels1.setRelatedTo(pixels2);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:18 Pixels pixels = pixels1.getRelatedTo();
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:28:18 Assert.assertNull(pixels1.getRelatedTo());
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:28:18 ^
01:28:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:28:18 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:28:18 ^
01:28:19Note: Some input files use unchecked or unsafe operations.
01:28:19Note: Recompile with -Xlint:unchecked for details.
01:28:1991 warnings
01:28:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_223566166.tmp
01:28:19Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:28:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:19:: delivering :: omero#OmeroJava-test;working@8bdefdc8cc5f :: 5.6.3-656-c1da4cac7b-ice36-b53 :: integration :: Thu Aug 20 01:28:02 UTC 2026
01:28:19 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:28:19:: publishing :: omero#OmeroJava-test
01:28:19 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-656-c1da4cac7b-ice36-b53.jar
01:28:19 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-656-c1da4cac7b-ice36-b53.xml
01:28:1901:28:19build-eclipse:
01:28:19No sub-builds to iterate on
01:28:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:2001:28:20retrieve:
01:28:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:2501:28:25prepare:
01:28:25Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:28:2901:28:29release-clients:
01:28:29Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-656-c1da4cac7b-ice36-b53.zip
01:28:3501:28:35release-zip:
01:28:35Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-656-c1da4cac7b-ice36-b53.zip
01:28:4701:28:47BUILD SUCCESSFUL
01:28:47Total time: 2 minutes 38 seconds
01:28:47++ '[' -d .git ']'
01:28:47++ python3 ./build.py release-src
01:28:47Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:28:4801:28:48release-src-git:
01:28:48Releasing openmicroscopy-5.6.3-656-c1da4cac7b-ice36-b53
01:28:50 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-656-c1da4cac7b-ice36-b53.zip
01:28:50 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-656-c1da4cac7b-ice36-b53-base.zip
01:28:5101:28:51BUILD SUCCESSFUL
01:28:51Total time: 4 seconds
01:28:51++ echo BUILD_NUMBER=53
01:28:51++ echo OMERO_BRANCH=merge_ci
01:28:51++ git_info
01:28:51+++ git rev-parse HEAD
01:28:51++ HEAD=c1da4cac7b0e3a50783e16bd0988ce42de6d5982
01:28:51++ git log --max-count=1 c1da4cac7b0e3a50783e16bd0988ce42de6d5982
01:28:51++ env
01:28:51++ sort
01:28:51Archiving artifacts
01:29:09Finished: SUCCESS
