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00:38:38 Started by upstream project "Trigger" build number 65
00:38:38 originally caused by:
00:38:38  Started by timer
00:38:38 Running as SYSTEM
00:38:38 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:38 The recommended git tool is: NONE
00:38:38 No credentials specified
00:38:38  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:38 Fetching changes from the remote Git repository
00:38:38  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:38 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
00:38:38  > git --version # timeout=10
00:38:38  > git --version # 'git version 2.39.3'
00:38:38  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:39  > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:39 Checking out Revision f03a779e14f97d4a0f97b714c01f71369552fa2e (origin/merge_ci)
00:38:39  > git config core.sparsecheckout # timeout=10
00:38:39  > git checkout -f f03a779e14f97d4a0f97b714c01f71369552fa2e # timeout=10
00:38:39 Commit message: "Add version.properties to etc/omero.properties"
00:38:39  > git rev-list --no-walk 13e2edfe3bd67d65288434ec44779eb37fc0e8ae # timeout=10
00:38:39 Cleaning workspace
00:38:39  > git rev-parse --verify HEAD # timeout=10
00:38:39 Resetting working tree
00:38:39  > git reset --hard # timeout=10
00:38:39  > git clean -fdx # timeout=10
00:38:39 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 56
00:38:39 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14674676867393218876.sh
00:38:39 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:38:39 + cd src
00:38:39 + export OMERO_BRANCH=merge_ci
00:38:39 + OMERO_BRANCH=merge_ci
00:38:39 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:39 + source /home/omero/settings.env
00:38:39 ++ OMERO_DB_HOST=pg
00:38:39 ++ OMERO_DB_USER=postgres
00:38:39 ++ OMERO_DB_PASS=
00:38:39 ++ OMERO_ROOT_PASS=omero
00:38:39 ++ OMERO_DATA_DIR=/OMERO
00:38:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:39 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:43 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
00:38:44 Collecting zeroc-ice==3.6.5
00:38:45   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:38:47 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:38:47 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:38:47 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:38:47 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
00:38:48 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:38:49 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:38:49 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:38:49 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:38:49 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:38:49 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:38:49 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:38:49 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:38:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:38:49 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:38:49 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:38:49 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:38:49 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:38:49 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:38:49 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:38:49 + source docs/hudson/OMERO.sh
00:38:49 ++ set -e
00:38:49 ++ set -u
00:38:49 ++ set -x
00:38:49 ++ source docs/hudson/functions.sh
00:38:49 ++ echo Building merge_ci
00:38:49 Building merge_ci
00:38:49 ++ python3 ./build.py build-dev release-all
00:38:49 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:38:50 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:38:51 
00:38:51 check-ivy:
00:38:51 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:38:51 Created dir: /home/omero/workspace/OMERO-build/src/target
00:38:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:52 
00:38:52 build-scons:
00:38:52 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:53 No sub-builds to iterate on
00:38:53 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:54 
00:38:54 buildlist:
00:38:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:54 
00:38:54 clean:
00:38:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:54 
00:38:54 python-clean:
00:38:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:54 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-465-f03a779e14-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:54   warnings.warn(
00:38:54 running clean
00:38:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:38:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:54 
00:38:54 python-clean:
00:38:54 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:54 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-465-f03a779e14-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:54   warnings.warn(
00:38:54 running clean
00:38:54 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:55 
00:38:55 python-clean:
00:38:55 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:55 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-465-f03a779e14-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:55   warnings.warn(
00:38:55 running clean
00:38:55 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:38:55 Deleting directory /home/omero/workspace/OMERO-build/src/target
00:38:55 
00:38:55 build-scons:
00:38:55 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:55 
00:38:55 build:
00:38:55 No sub-builds to iterate on
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:55 
00:38:55 tools-init:
00:38:55 no-op
00:38:56 
00:38:56 retrieve:
00:38:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:56 WARNING: An illegal reflective access operation has occurred
00:38:56 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:38:56 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:38:56 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:38:56 WARNING: All illegal access operations will be denied in a future release
00:39:13 
00:39:13 prepare:
00:39:13 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:13 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:13 
00:39:13 pre-compile:
00:39:13 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:13 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:14 
00:39:14 compile:
00:39:14 no-op
00:39:14 
00:39:14 package:
00:39:14 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:39:14 
00:39:14 install:
00:39:14 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-465-f03a779e14-ice36 :: integration :: Thu May 09 00:38:55 UTC 2024
00:39:14 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:39:14 :: publishing :: omero#omero_client
00:39:14 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-465-f03a779e14-ice36/omero_client-5.6.3-465-f03a779e14-ice36.jar
00:39:14 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-465-f03a779e14-ice36/omero_client-5.6.3-465-f03a779e14-ice36.xml
00:39:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:15 
00:39:15 retrieve:
00:39:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:16 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:16 
00:39:16 dist:
00:39:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:39:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:39:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:16 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:39:16 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:39:16 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:39:16 Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:39:16 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:16 
00:39:16 copy-licenses:
00:39:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:39:16 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:39:17 
00:39:17 copy-history:
00:39:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:17 
00:39:17 copy-etc:
00:39:17 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:39:17 
00:39:17 copy-sql:
00:39:17 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:39:23 
00:39:23 copy-server:
00:39:23 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:39:23 
00:39:23 copy-client:
00:39:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:39:25 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:39:25 
00:39:25 update-version:
00:39:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:25 
00:39:25 create-workdirs:
00:39:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:39:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:39:25 
00:39:25 copy-luts:
00:39:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:25 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:25 
00:39:25 test-compile:
00:39:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:26 
00:39:26 testng-init:
00:39:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:30 00:39:29,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:39:30 00:39:29,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - No custom configurators were discovered as a service.
00:39:30 00:39:29,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:30 00:39:29,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:30 00:39:29,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:39:30 00:39:29,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:39:30 00:39:29,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:39:30 00:39:29,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:30 00:39:29,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:30 00:39:29,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:39:30 00:39:29,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:30 00:39:29,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs multiple times on the classpath.
00:39:30 00:39:29,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:30 00:39:29,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:39:30 00:39:30,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:39:30 00:39:30,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:39:30 00:39:30,125 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:39:30 00:39:30,127 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:39:30 00:39:30,127 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Please move "immediateFlush" property into the enclosing appender.
00:39:30 00:39:30,204 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Setting the "immediateFlush" property of the enclosing appender to true
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:39:30 00:39:30,205 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:39:30 00:39:30,206 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33ce766b - End of configuration.
00:39:30 00:39:30,209 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5bd8b901 - Registering current configuration as safe fallback point
00:39:30 00:39:30,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 375 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:39:30 
00:39:30 lifecycle.test-compile:
00:39:30 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:30 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:30 warning: [options] bootstrap class path not set in conjunction with -source 8
00:39:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:33 import omero.grid.RawAccessRequest;
00:39:33                  ^
00:39:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:33 import omero.grid.RawAccessRequest;
00:39:33                  ^
00:39:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:33 import omero.grid.RawAccessRequest;
00:39:33                  ^
00:39:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:33 import omero.model.ImportJob;
00:39:33                   ^
00:39:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:33 import omero.model.ImportJobI;
00:39:33                   ^
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:39:34         IObject link = (IObject) linkClass.newInstance();
00:39:34                                           ^
00:39:34   where T is a type-variable:
00:39:34     T extends Object declared in class Class
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:39:34         T copy = (T) obj.getClass().newInstance();
00:39:34                                    ^
00:39:34   where T is a type-variable:
00:39:34     T extends Object declared in class Class
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:34         RawAccessRequest raw = new RawAccessRequest();
00:39:34         ^
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:34         RawAccessRequest raw = new RawAccessRequest();
00:39:34                                    ^
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:34         raw.repoUuid = legacy.root().getHash().getValue();
00:39:34            ^
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:34         raw.command = "rm";
00:39:34            ^
00:39:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:34         raw.args = Arrays.asList(path);
00:39:34            ^
00:39:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:39:35         final IObject link = linkClass.newInstance();
00:39:35                                       ^
00:39:35   where T is a type-variable:
00:39:35     T extends Object declared in class Class
00:39:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:39:35             originalLink.setChild(annotationClass.newInstance());
00:39:35                                                  ^
00:39:35   where T is a type-variable:
00:39:35     T extends Object declared in class Class
00:39:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:35         RoiResult r = svc.findByImage(id, new RoiOptions());
00:39:35                          ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:36         final RawAccessRequest request = new RawAccessRequest();
00:39:36               ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:36         final RawAccessRequest request = new RawAccessRequest();
00:39:36                                              ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:36         request.repoUuid = repo.root().getHash().getValue();
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:36         request.command = "exists";
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:36         request.args = Collections.singletonList(dirPath);
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:36         final RawAccessRequest request = new RawAccessRequest();
00:39:36               ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:36         final RawAccessRequest request = new RawAccessRequest();
00:39:36                                              ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:36         request.repoUuid = repo.root().getHash().getValue();
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:36         request.command = "exists";
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:36         request.args = Collections.singletonList(dirName);
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:36         final ImportJob importJob = new ImportJobI();
00:39:36               ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:36         final ImportJob importJob = new ImportJobI();
00:39:36                                         ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:39:36         importJob.setImageName(omero.rtypes.rstring(name));
00:39:36                  ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:39:36         importJob.setImageDescription(omero.rtypes.rstring(desc));
00:39:36                  ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:36         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:36         ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:36         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:36                           ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:36         final String savedName = sent.getImageName().getValue().toString();
00:39:36                                      ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:36         final String savedDesc = sent.getImageDescription().getValue().toString();
00:39:36                                      ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:36         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:36               ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:36         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:36                                               ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:36         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:39:36                                                        ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:36         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:39:36                                                        ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:36                          ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:36                                 ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:36                                 ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:39:36         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:39:36                                          ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:36                                 ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:39:36         table = svc.getTable(f.getId().getValue());
00:39:36                    ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:36                          ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:36         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:36         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:39:36                ^
00:39:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:36         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:39:36                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:37                   ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:37                                   ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:37                                    ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:37                                                    ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:39:37             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:37                                       ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:37                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:37                                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:37                                                         ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:37                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:37                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:37                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:37         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:37                                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:37                 svc.getShapeStatsRestricted(
00:39:37                    ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:37         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:39:37                                        ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:37         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:37                                      ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:37         request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:37         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:37         request.typesToIgnore = Collections.singletonList("Annotation");
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:37                     request.typesToIgnore = Collections.singletonList("Annotation");
00:39:37                            ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:37         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:37                                      ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:37         p2.setRelatedTo(p1);
00:39:37           ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:37         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:39:37                                           ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:37         pixels1.setRelatedTo(pixels2);
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:37         Pixels pixels = pixels1.getRelatedTo();
00:39:37                                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:37         Assert.assertNull(pixels1.getRelatedTo());
00:39:37                                  ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:37         pixels1.setRelatedTo(pixels2);
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:37         Pixels pixels = pixels1.getRelatedTo();
00:39:37                                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:37         Assert.assertNull(pixels1.getRelatedTo());
00:39:37                                  ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:37         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:37                                 ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:37         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:37                ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:37         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:37                                 ^
00:39:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:37         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:37                ^
00:39:37 Note: Some input files use unchecked or unsafe operations.
00:39:37 Note: Recompile with -Xlint:unchecked for details.
00:39:37 88 warnings
00:39:37 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_71801573.tmp
00:39:37 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:39:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:37 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-465-f03a779e14-ice36 :: integration :: Thu May 09 00:39:25 UTC 2024
00:39:37 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:39:37 :: publishing :: omero#OmeroJava-test
00:39:37 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-465-f03a779e14-ice36.jar
00:39:37 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-465-f03a779e14-ice36.xml
00:39:37 
00:39:37 build-eclipse:
00:39:37 No sub-builds to iterate on
00:39:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:38 
00:39:38 retrieve:
00:39:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:40 
00:39:40 prepare:
00:39:40 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:42 
00:39:42 release-clients:
00:39:42 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-465-f03a779e14-ice36.zip
00:39:49 
00:39:49 release-zip:
00:39:49 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-465-f03a779e14-ice36.zip
00:40:02 
00:40:02 BUILD SUCCESSFUL
00:40:02 Total time: 1 minute 11 seconds
00:40:02 ++ '[' -d .git ']'
00:40:02 ++ python3 ./build.py release-src
00:40:02 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:02 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:02 
00:40:02 release-src-git:
00:40:02 Releasing openmicroscopy-5.6.3-465-f03a779e14-ice36
00:40:04   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-465-f03a779e14-ice36.zip
00:40:04   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-465-f03a779e14-ice36-base.zip
00:40:06 
00:40:06 BUILD SUCCESSFUL
00:40:06 Total time: 3 seconds
00:40:06 ++ echo BUILD_NUMBER=56
00:40:06 ++ echo OMERO_BRANCH=merge_ci
00:40:06 ++ git_info
00:40:06 +++ git rev-parse HEAD
00:40:06 ++ HEAD=f03a779e14f97d4a0f97b714c01f71369552fa2e
00:40:06 ++ git log --max-count=1 f03a779e14f97d4a0f97b714c01f71369552fa2e
00:40:06 ++ env
00:40:06 ++ sort
00:40:06 Archiving artifacts
00:40:35 Finished: SUCCESS