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01:26:36 Started by upstream project "Trigger" build number 66
01:26:36 originally caused by:
01:26:36  Started by timer
01:26:36 Running as SYSTEM
01:26:36 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:26:36 The recommended git tool is: NONE
01:26:36 No credentials specified
01:26:36  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:26:36 Fetching changes from the remote Git repository
01:26:36  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:26:36 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
01:26:36  > git --version # timeout=10
01:26:36  > git --version # 'git version 2.52.0'
01:26:36  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:26:41  > git rev-parse origin/merge_ci^{commit} # timeout=10
01:26:41 Checking out Revision 522ea259c39bd3e7db21bc5b00cf86a83d7c2c9a (origin/merge_ci)
01:26:41  > git config core.sparsecheckout # timeout=10
01:26:41  > git checkout -f 522ea259c39bd3e7db21bc5b00cf86a83d7c2c9a # timeout=10
01:26:44 Commit message: "Add version.properties to etc/omero.properties"
01:26:44  > git rev-list --no-walk ea14a7366ee8807abc1e35a9cacc1aeac2df51e0 # timeout=10
01:26:44 Cleaning workspace
01:26:44  > git rev-parse --verify HEAD # timeout=10
01:26:44 Resetting working tree
01:26:44  > git reset --hard # timeout=10
01:26:44  > git clean -fdx # timeout=10
01:27:19 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 49
01:27:19 [OMERO-build] $ /bin/bash -xe /tmp/jenkins3723540440987946406.sh
01:27:19 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:27:19 + cd src
01:27:19 + export OMERO_BRANCH=merge_ci
01:27:19 + OMERO_BRANCH=merge_ci
01:27:19 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:27:19 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:27:47 + source /home/omero/settings.env
01:27:47 ++ OMERO_DB_HOST=pg
01:27:47 ++ OMERO_DB_USER=postgres
01:27:47 ++ OMERO_DB_PASS=
01:27:47 ++ OMERO_ROOT_PASS=omero
01:27:47 ++ OMERO_DATA_DIR=/OMERO
01:27:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:27:47 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:28:08 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:28:09 Collecting zeroc-ice==3.6.5
01:28:10   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:28:13      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.2 MB/s eta 0:00:00
01:28:13 Installing collected packages: zeroc-ice
01:28:17 Successfully installed zeroc-ice-3.6.5
01:28:17 
01:28:17 [notice] A new release of pip available: 22.3.1 -> 26.2.1
01:28:17 [notice] To update, run: python3.11 -m pip install --upgrade pip
01:28:17 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:28:18 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:28:18 Collecting setuptools<66
01:28:18   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:28:18 Collecting omero-py
01:28:18   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:28:18 Collecting appdirs
01:28:19   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:28:19 Collecting future
01:28:19   Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:28:19 Collecting numpy<3,>=2
01:28:19   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:28:20 Collecting Pillow>=10.0.0
01:28:20   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:28:20 Collecting PyYAML
01:28:20   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:28:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:28:20 Collecting requests
01:28:20   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:28:21 Collecting portalocker
01:28:21   Downloading portalocker-4.2.0-py3-none-any.whl (128 kB)
01:28:21      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 128.0/128.0 kB 1.9 MB/s eta 0:00:00
01:28:21 Collecting charset_normalizer<4,>=2
01:28:21   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
01:28:21 Collecting idna<4,>=2.5
01:28:21   Using cached idna-3.19-py3-none-any.whl (68 kB)
01:28:21 Collecting urllib3<3,>=1.26
01:28:21   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:28:22 Collecting certifi>=2023.5.7
01:28:22   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:28:22 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:28:23   Attempting uninstall: setuptools
01:28:23     Found existing installation: setuptools 65.5.1
01:28:23     Uninstalling setuptools-65.5.1:
01:28:24       Successfully uninstalled setuptools-65.5.1
01:29:14 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:29:15 
01:29:15 [notice] A new release of pip available: 22.3.1 -> 26.2.1
01:29:15 [notice] To update, run: python3.11 -m pip install --upgrade pip
01:29:15 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:29:15 ++ deactivate nondestructive
01:29:15 ++ '[' -n '' ']'
01:29:15 ++ '[' -n '' ']'
01:29:15 ++ hash -r
01:29:15 ++ '[' -n '' ']'
01:29:15 ++ unset VIRTUAL_ENV
01:29:15 ++ unset VIRTUAL_ENV_PROMPT
01:29:15 ++ '[' '!' nondestructive = nondestructive ']'
01:29:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:29:15 ++ export VIRTUAL_ENV
01:29:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:29:15 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:29:15 ++ export PATH
01:29:15 ++ '[' -n '' ']'
01:29:15 ++ '[' -z '' ']'
01:29:15 ++ _OLD_VIRTUAL_PS1=
01:29:15 ++ PS1='(omero-virtualenv) '
01:29:15 ++ export PS1
01:29:15 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:29:15 ++ export VIRTUAL_ENV_PROMPT
01:29:15 ++ hash -r
01:29:15 + source docs/hudson/OMERO.sh
01:29:15 ++ set -e
01:29:15 ++ set -u
01:29:15 ++ set -x
01:29:15 ++ source docs/hudson/functions.sh
01:29:15 ++ echo Building merge_ci
01:29:15 Building merge_ci
01:29:15 ++ python3 ./build.py build-dev release-all
01:29:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:29:16 
01:29:16 check-ivy:
01:29:16 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:29:16 Created dir: /home/omero/workspace/OMERO-build/src/target
01:29:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:18 
01:29:18 build-scons:
01:29:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:29:20 No sub-builds to iterate on
01:29:20 Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:29:21 
01:29:21 buildlist:
01:29:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:21 
01:29:21 clean:
01:29:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:22 
01:29:22 python-clean:
01:29:22 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:22 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-522ea259c3-ice36-b59') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:22   warnings.warn(
01:29:22 running clean
01:29:22 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:29:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:23 
01:29:23 python-clean:
01:29:23 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:23 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-522ea259c3-ice36-b59') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:23   warnings.warn(
01:29:23 running clean
01:29:23 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:29:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:25 
01:29:25 python-clean:
01:29:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:25 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-522ea259c3-ice36-b59') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:25   warnings.warn(
01:29:25 running clean
01:29:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:29:25 Deleting directory /home/omero/workspace/OMERO-build/src/target
01:29:26 
01:29:26 build-scons:
01:29:26 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:29:28 
01:29:28 build:
01:29:28 No sub-builds to iterate on
01:29:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:29 
01:29:29 tools-init:
01:29:29 no-op
01:29:30 
01:29:30 retrieve:
01:29:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:31:33 
01:31:33 prepare:
01:31:33 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:31:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:33 
01:31:33 pre-compile:
01:31:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:31:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:03 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:24 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:35 
01:32:35 compile:
01:32:35 no-op
01:32:35 
01:32:35 package:
01:32:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:32:40 
01:32:40 install:
01:32:40 :: delivering :: omero#omero_client;working@8bdefdc8cc5f :: 5.6.3-675-522ea259c3-ice36-b59 :: integration :: Sat Aug 22 01:29:29 UTC 2026
01:32:40 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:32:40 :: publishing :: omero#omero_client
01:32:40 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-675-522ea259c3-ice36-b59/omero_client-5.6.3-675-522ea259c3-ice36-b59.jar
01:32:40 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-675-522ea259c3-ice36-b59/omero_client-5.6.3-675-522ea259c3-ice36-b59.xml
01:32:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:42 
01:32:42 retrieve:
01:32:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:43 Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:32:43 
01:32:43 dist:
01:32:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:32:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:32:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:47 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:32:48 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:32:52 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:32:52 Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:32:53 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:32:54 
01:32:54 copy-licenses:
01:32:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:32:54 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:32:55 
01:32:55 copy-history:
01:32:55 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:56 
01:32:56 copy-etc:
01:32:56 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:32:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:32:57 
01:32:57 copy-sql:
01:32:57 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:34:29 
01:34:29 copy-server:
01:34:29 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:34:29 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
01:34:52 
01:34:52 copy-client:
01:34:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:35:05 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:35:05 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
01:35:25 
01:35:25 update-version:
01:35:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:35:25 
01:35:25 create-workdirs:
01:35:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:35:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:35:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:35:25 
01:35:25 copy-luts:
01:35:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:35:25 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:35:26 
01:35:26 test-compile:
01:35:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:35:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:35:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:35:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:35:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:35:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:35:29 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:35:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:35:30 
01:35:30 testng-init:
01:35:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:35:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:35:55 01:35:54,816 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:35:55 01:35:54,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - No custom configurators were discovered as a service.
01:35:55 01:35:54,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:35:55 01:35:54,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:35:55 01:35:54,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:35:55 01:35:54,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:35:55 01:35:54,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:35:55 01:35:54,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:35:55 01:35:54,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:35:55 01:35:54,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:35:55 01:35:54,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:35:55 01:35:54,848 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1da0256f - Resource [logback.xml] occurs multiple times on the classpath.
01:35:55 01:35:54,848 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1da0256f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:35:55 01:35:54,848 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1da0256f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:35:55 01:35:55,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:35:55 01:35:55,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:35:55 01:35:55,131 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:35:55 01:35:55,133 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@310e6969 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:35:55 01:35:55,133 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@310e6969 - Please move "immediateFlush" property into the enclosing appender.
01:35:55 01:35:55,205 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@310e6969 - Setting the "immediateFlush" property of the enclosing appender to true
01:35:55 01:35:55,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:35:55 01:35:55,207 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:35:55 01:35:55,207 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:35:55 01:35:55,207 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:35:55 01:35:55,207 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:35:55 01:35:55,207 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:35:55 01:35:55,208 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@54c17694 - End of configuration.
01:35:55 01:35:55,211 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5f8958af - Registering current configuration as safe fallback point
01:35:55 01:35:55,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@45f9c744 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 374 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:35:55 
01:35:55 lifecycle.test-compile:
01:35:55 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:35:55 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:35:55 warning: [options] bootstrap class path not set in conjunction with -source 8
01:35:55 warning: [options] source value 8 is obsolete and will be removed in a future release
01:35:55 warning: [options] target value 8 is obsolete and will be removed in a future release
01:35:55 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:35:57 import omero.grid.RawAccessRequest;
01:35:57                  ^
01:35:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:35:58 import omero.grid.RawAccessRequest;
01:35:58                  ^
01:35:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:35:58 import omero.grid.RawAccessRequest;
01:35:58                  ^
01:35:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:35:58 import omero.model.ImportJob;
01:35:58                   ^
01:35:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:35:58 import omero.model.ImportJobI;
01:35:58                   ^
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
01:35:59         IObject link = (IObject) linkClass.newInstance();
01:35:59                                           ^
01:35:59   where T is a type-variable:
01:35:59     T extends Object declared in class Class
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:35:59         T copy = (T) obj.getClass().newInstance();
01:35:59                                    ^
01:35:59   where T is a type-variable:
01:35:59     T extends Object declared in class Class
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:35:59         RawAccessRequest raw = new RawAccessRequest();
01:35:59         ^
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:35:59         RawAccessRequest raw = new RawAccessRequest();
01:35:59                                    ^
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:35:59         raw.repoUuid = legacy.root().getHash().getValue();
01:35:59            ^
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:35:59         raw.command = "rm";
01:35:59            ^
01:35:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:35:59         raw.args = Arrays.asList(path);
01:35:59            ^
01:36:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:36:00         final IObject link = linkClass.newInstance();
01:36:00                                       ^
01:36:00   where T is a type-variable:
01:36:00     T extends Object declared in class Class
01:36:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:36:00             originalLink.setChild(annotationClass.newInstance());
01:36:00                                                  ^
01:36:00   where T is a type-variable:
01:36:00     T extends Object declared in class Class
01:36:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:36:00         RoiResult r = svc.findByImage(id, new RoiOptions());
01:36:00                          ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:36:01         final RawAccessRequest request = new RawAccessRequest();
01:36:01               ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:36:01         final RawAccessRequest request = new RawAccessRequest();
01:36:01                                              ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:36:01         request.repoUuid = repo.root().getHash().getValue();
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:36:01         request.command = "exists";
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:36:01         request.args = Collections.singletonList(dirPath);
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:36:01         final RawAccessRequest request = new RawAccessRequest();
01:36:01               ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:36:01         final RawAccessRequest request = new RawAccessRequest();
01:36:01                                              ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:36:01         request.repoUuid = repo.root().getHash().getValue();
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:36:01         request.command = "exists";
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:36:01         request.args = Collections.singletonList(dirName);
01:36:01                ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:36:01             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
01:36:01                                      ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:36:01         final ImportJob importJob = new ImportJobI();
01:36:01               ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:36:01         final ImportJob importJob = new ImportJobI();
01:36:01                                         ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:36:01         importJob.setImageName(omero.rtypes.rstring(name));
01:36:01                  ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:36:01         importJob.setImageDescription(omero.rtypes.rstring(desc));
01:36:01                  ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:36:01         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:36:01         ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:36:01         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:36:01                           ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:36:01         final String savedName = sent.getImageName().getValue().toString();
01:36:01                                      ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:36:01         final String savedDesc = sent.getImageDescription().getValue().toString();
01:36:01                                      ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:36:01         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:36:01               ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:36:01         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:36:01                                               ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:36:01         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:36:01                                                        ^
01:36:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:36:01         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:36:01                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         RoiResult r = svc.findByImage(image.getId().getValue(),
01:36:02                          ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:36:02                                 ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:36:02                                 ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:36:02         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:36:02                                          ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:36:02                                 ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:36:02         table = svc.getTable(f.getId().getValue());
01:36:02                    ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         RoiResult r = svc.findByImage(image.getId().getValue(),
01:36:02                          ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:36:02         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:36:02         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:36:02         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:36:02                ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:36:02                   ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:36:02                                   ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:36:02                                    ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:36:02                                                    ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:36:02             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:36:02                                       ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:36:02                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:36:02                                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:36:02                                                         ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:36:02                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:36:02                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:36:02                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:36:02         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:36:02                                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:36:02                 svc.getShapeStatsRestricted(
01:36:02                    ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:36:02         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:36:02                                        ^
01:36:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:36:02         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:36:02                                      ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:36:03         request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:36:03         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:36:03         request.typesToIgnore = Collections.singletonList("Annotation");
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:36:03                     request.typesToIgnore = Collections.singletonList("Annotation");
01:36:03                            ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:36:03         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:36:03                                      ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:36:03         p2.setRelatedTo(p1);
01:36:03           ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:36:03         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:36:03                                           ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:36:03         pixels1.setRelatedTo(pixels2);
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:36:03         Pixels pixels = pixels1.getRelatedTo();
01:36:03                                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:36:03         Assert.assertNull(pixels1.getRelatedTo());
01:36:03                                  ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:36:03         pixels1.setRelatedTo(pixels2);
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:36:03         Pixels pixels = pixels1.getRelatedTo();
01:36:03                                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:36:03         Assert.assertNull(pixels1.getRelatedTo());
01:36:03                                  ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:03         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:36:03                                 ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:03         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:36:03                ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:03         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:36:03                                 ^
01:36:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:36:03         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:36:03                ^
01:36:03 Note: Some input files use unchecked or unsafe operations.
01:36:03 Note: Recompile with -Xlint:unchecked for details.
01:36:03 92 warnings
01:36:04 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_64442236.tmp
01:36:04 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:36:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:04 :: delivering :: omero#OmeroJava-test;working@8bdefdc8cc5f :: 5.6.3-675-522ea259c3-ice36-b59 :: integration :: Sat Aug 22 01:35:29 UTC 2026
01:36:04 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:36:04 :: publishing :: omero#OmeroJava-test
01:36:04 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-675-522ea259c3-ice36-b59.jar
01:36:04 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-675-522ea259c3-ice36-b59.xml
01:36:04 
01:36:04 build-eclipse:
01:36:04 No sub-builds to iterate on
01:36:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:36:05 
01:36:05 retrieve:
01:36:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:36:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:13 
01:36:13 prepare:
01:36:13 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:36:21 
01:36:21 release-clients:
01:36:21 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-675-522ea259c3-ice36-b59.zip
01:36:31 
01:36:31 release-zip:
01:36:31 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-675-522ea259c3-ice36-b59.zip
01:36:46 
01:36:46 BUILD SUCCESSFUL
01:36:46 Total time: 7 minutes 31 seconds
01:36:46 ++ '[' -d .git ']'
01:36:46 ++ python3 ./build.py release-src
01:36:46 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:36:48 
01:36:48 release-src-git:
01:36:48 Releasing openmicroscopy-5.6.3-675-522ea259c3-ice36-b59
01:36:50   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-675-522ea259c3-ice36-b59.zip
01:36:50   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-675-522ea259c3-ice36-b59-base.zip
01:36:51 
01:36:51 BUILD SUCCESSFUL
01:36:51 Total time: 5 seconds
01:36:51 ++ echo BUILD_NUMBER=59
01:36:52 ++ echo OMERO_BRANCH=merge_ci
01:36:52 ++ git_info
01:36:52 +++ git rev-parse HEAD
01:36:52 ++ HEAD=522ea259c39bd3e7db21bc5b00cf86a83d7c2c9a
01:36:52 ++ git log --max-count=1 522ea259c39bd3e7db21bc5b00cf86a83d7c2c9a
01:36:52 ++ env
01:36:52 ++ sort
01:36:52 Archiving artifacts
01:37:12 Finished: SUCCESS