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14:44:37 Started by user devspace
14:44:37 Running as SYSTEM
14:44:37 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:44:37 The recommended git tool is: NONE
14:44:37 No credentials specified
14:44:37  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:44:37 Fetching changes from the remote Git repository
14:44:37  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:44:37 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
14:44:37  > git --version # timeout=10
14:44:37  > git --version # 'git version 2.52.0'
14:44:37  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:44:38  > git rev-parse origin/merge_ci^{commit} # timeout=10
14:44:38 Checking out Revision ea14a7366ee8807abc1e35a9cacc1aeac2df51e0 (origin/merge_ci)
14:44:38  > git config core.sparsecheckout # timeout=10
14:44:38  > git checkout -f ea14a7366ee8807abc1e35a9cacc1aeac2df51e0 # timeout=10
14:44:39 Commit message: "Add version.properties to etc/omero.properties"
14:44:39  > git rev-list --no-walk ea14a7366ee8807abc1e35a9cacc1aeac2df51e0 # timeout=10
14:44:39 Cleaning workspace
14:44:39  > git rev-parse --verify HEAD # timeout=10
14:44:39 Resetting working tree
14:44:39  > git reset --hard # timeout=10
14:44:39  > git clean -fdx # timeout=10
14:45:02 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 48
14:45:02 [OMERO-build] $ /bin/bash -xe /tmp/jenkins12690071471770504826.sh
14:45:02 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
14:45:02 + cd src
14:45:02 + export OMERO_BRANCH=merge_ci
14:45:02 + OMERO_BRANCH=merge_ci
14:45:02 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:45:02 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
14:45:27 + source /home/omero/settings.env
14:45:27 ++ OMERO_DB_HOST=pg
14:45:27 ++ OMERO_DB_USER=postgres
14:45:27 ++ OMERO_DB_PASS=
14:45:27 ++ OMERO_ROOT_PASS=omero
14:45:27 ++ OMERO_DATA_DIR=/OMERO
14:45:27 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:45:27 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:45:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
14:45:51 Collecting zeroc-ice==3.6.5
14:45:52   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
14:45:54      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.2 MB/s eta 0:00:00
14:45:54 Installing collected packages: zeroc-ice
14:45:58 Successfully installed zeroc-ice-3.6.5
14:45:58 
14:45:58 [notice] A new release of pip available: 22.3.1 -> 26.2.1
14:45:58 [notice] To update, run: python3.11 -m pip install --upgrade pip
14:45:58 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
14:45:59 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
14:45:59 Collecting setuptools<66
14:45:59   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
14:46:00 Collecting omero-py
14:46:00   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
14:46:00 Collecting appdirs
14:46:00   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:46:00 Collecting future
14:46:00   Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:46:01 Collecting numpy<3,>=2
14:46:01   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
14:46:01 Collecting Pillow>=10.0.0
14:46:01   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
14:46:02 Collecting PyYAML
14:46:02   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
14:46:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
14:46:02 Collecting requests
14:46:02   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
14:46:02 Collecting portalocker
14:46:02   Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
14:46:02 Collecting charset_normalizer<4,>=2
14:46:02   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
14:46:03 Collecting idna<4,>=2.5
14:46:03   Using cached idna-3.19-py3-none-any.whl (68 kB)
14:46:03 Collecting urllib3<3,>=1.26
14:46:03   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
14:46:03 Collecting certifi>=2023.5.7
14:46:03   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
14:46:03 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
14:46:04   Attempting uninstall: setuptools
14:46:04     Found existing installation: setuptools 65.5.1
14:46:05     Uninstalling setuptools-65.5.1:
14:46:05       Successfully uninstalled setuptools-65.5.1
14:46:58 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
14:46:58 
14:46:58 [notice] A new release of pip available: 22.3.1 -> 26.2.1
14:46:58 [notice] To update, run: python3.11 -m pip install --upgrade pip
14:46:58 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
14:46:58 ++ deactivate nondestructive
14:46:58 ++ '[' -n '' ']'
14:46:58 ++ '[' -n '' ']'
14:46:58 ++ hash -r
14:46:58 ++ '[' -n '' ']'
14:46:58 ++ unset VIRTUAL_ENV
14:46:58 ++ unset VIRTUAL_ENV_PROMPT
14:46:58 ++ '[' '!' nondestructive = nondestructive ']'
14:46:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
14:46:58 ++ export VIRTUAL_ENV
14:46:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:46:58 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:46:58 ++ export PATH
14:46:58 ++ '[' -n '' ']'
14:46:58 ++ '[' -z '' ']'
14:46:58 ++ _OLD_VIRTUAL_PS1=
14:46:58 ++ PS1='(omero-virtualenv) '
14:46:58 ++ export PS1
14:46:58 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
14:46:58 ++ export VIRTUAL_ENV_PROMPT
14:46:58 ++ hash -r
14:46:58 + source docs/hudson/OMERO.sh
14:46:58 ++ set -e
14:46:58 ++ set -u
14:46:58 ++ set -x
14:46:58 ++ source docs/hudson/functions.sh
14:46:58 ++ echo Building merge_ci
14:46:58 Building merge_ci
14:46:58 ++ python3 ./build.py build-dev release-all
14:46:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:47:00 
14:47:00 check-ivy:
14:47:00 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:47:00 Created dir: /home/omero/workspace/OMERO-build/src/target
14:47:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:47:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:47:01 
14:47:01 build-scons:
14:47:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:47:03 No sub-builds to iterate on
14:47:04 Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:47:04 
14:47:04 buildlist:
14:47:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:47:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:47:04 
14:47:04 clean:
14:47:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:47:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:47:05 
14:47:05 python-clean:
14:47:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:47:05 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-ea14a7366e-ice36-b58') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:47:05   warnings.warn(
14:47:05 running clean
14:47:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:47:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:47:06 
14:47:06 python-clean:
14:47:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:47:06 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-ea14a7366e-ice36-b58') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:47:06   warnings.warn(
14:47:06 running clean
14:47:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:47:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:47:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:47:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:47:08 
14:47:08 python-clean:
14:47:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:47:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-675-ea14a7366e-ice36-b58') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:47:08   warnings.warn(
14:47:08 running clean
14:47:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:47:08 Deleting directory /home/omero/workspace/OMERO-build/src/target
14:47:09 
14:47:09 build-scons:
14:47:09 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:47:11 
14:47:11 build:
14:47:11 No sub-builds to iterate on
14:47:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:47:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:47:13 
14:47:13 tools-init:
14:47:13 no-op
14:47:13 
14:47:13 retrieve:
14:47:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:47:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:49:21 
14:49:21 prepare:
14:49:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:49:21 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:49:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:49:21 
14:49:21 pre-compile:
14:49:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:49:23 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:49:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:49:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:49:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:49:38 
14:49:38 compile:
14:49:38 no-op
14:49:38 
14:49:38 package:
14:49:38 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
14:49:43 
14:49:43 install:
14:49:43 :: delivering :: omero#omero_client;working@8bdefdc8cc5f :: 5.6.3-675-ea14a7366e-ice36-b58 :: integration :: Fri Aug 21 14:47:12 UTC 2026
14:49:43 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
14:49:43 :: publishing :: omero#omero_client
14:49:43 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-675-ea14a7366e-ice36-b58/omero_client-5.6.3-675-ea14a7366e-ice36-b58.jar
14:49:43 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-675-ea14a7366e-ice36-b58/omero_client-5.6.3-675-ea14a7366e-ice36-b58.xml
14:49:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:49:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:49:44 
14:49:44 retrieve:
14:49:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:49:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:49:45 Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:49:45 
14:49:45 dist:
14:49:45 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
14:49:45 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
14:49:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:49:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:49:45 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
14:49:46 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
14:49:46 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
14:49:46 Entering /home/omero/workspace/OMERO-build/src/components/tests...
14:49:47 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:49:48 
14:49:48 copy-licenses:
14:49:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:49:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
14:49:48 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
14:49:48 
14:49:48 copy-history:
14:49:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:49:48 
14:49:48 copy-etc:
14:49:48 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
14:49:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
14:49:49 
14:49:49 copy-sql:
14:49:49 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
14:50:21 
14:50:21 copy-server:
14:50:21 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
14:50:21 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
14:50:30 
14:50:30 copy-client:
14:50:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
14:50:36 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
14:50:36 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
14:50:43 
14:50:43 update-version:
14:50:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
14:50:43 
14:50:43 create-workdirs:
14:50:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
14:50:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
14:50:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
14:50:43 
14:50:43 copy-luts:
14:50:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:50:43 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:50:43 
14:50:43 test-compile:
14:50:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:50:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:50:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:50:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:50:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:50:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:50:45 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:50:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:50:46 
14:50:46 testng-init:
14:50:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:50:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:50:55 14:50:54,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
14:50:55 14:50:54,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - No custom configurators were discovered as a service.
14:50:55 14:50:54,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
14:50:55 14:50:54,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
14:50:55 14:50:54,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
14:50:55 14:50:54,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
14:50:55 14:50:54,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
14:50:55 14:50:54,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
14:50:55 14:50:54,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
14:50:55 14:50:54,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
14:50:55 14:50:54,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:50:55 14:50:54,747 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30384990 - Resource [logback.xml] occurs multiple times on the classpath.
14:50:55 14:50:54,747 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30384990 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:50:55 14:50:54,747 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30384990 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
14:50:55 14:50:54,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
14:50:55 14:50:54,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
14:50:55 14:50:55,007 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
14:50:55 14:50:55,009 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@320cfa73 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
14:50:55 14:50:55,009 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@320cfa73 - Please move "immediateFlush" property into the enclosing appender.
14:50:55 14:50:55,082 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@320cfa73 - Setting the "immediateFlush" property of the enclosing appender to true
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
14:50:55 14:50:55,083 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
14:50:55 14:50:55,084 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2fcc009e - End of configuration.
14:50:55 14:50:55,087 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4415b9fa - Registering current configuration as safe fallback point
14:50:55 14:50:55,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f069693 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 362 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
14:50:55 
14:50:55 lifecycle.test-compile:
14:50:55 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:50:55 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:50:55 warning: [options] bootstrap class path not set in conjunction with -source 8
14:50:55 warning: [options] source value 8 is obsolete and will be removed in a future release
14:50:55 warning: [options] target value 8 is obsolete and will be removed in a future release
14:50:55 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
14:50:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:50:57 import omero.grid.RawAccessRequest;
14:50:57                  ^
14:50:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:50:58 import omero.grid.RawAccessRequest;
14:50:58                  ^
14:50:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:50:58 import omero.grid.RawAccessRequest;
14:50:58                  ^
14:50:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
14:50:58 import omero.model.ImportJob;
14:50:58                   ^
14:50:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:50:58 import omero.model.ImportJobI;
14:50:58                   ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
14:50:59         IObject link = (IObject) linkClass.newInstance();
14:50:59                                           ^
14:50:59   where T is a type-variable:
14:50:59     T extends Object declared in class Class
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
14:50:59         T copy = (T) obj.getClass().newInstance();
14:50:59                                    ^
14:50:59   where T is a type-variable:
14:50:59     T extends Object declared in class Class
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:50:59         RawAccessRequest raw = new RawAccessRequest();
14:50:59         ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:50:59         RawAccessRequest raw = new RawAccessRequest();
14:50:59                                    ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:50:59         raw.repoUuid = legacy.root().getHash().getValue();
14:50:59            ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
14:50:59         raw.command = "rm";
14:50:59            ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
14:50:59         raw.args = Arrays.asList(path);
14:50:59            ^
14:50:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
14:50:59         final IObject link = linkClass.newInstance();
14:50:59                                       ^
14:50:59   where T is a type-variable:
14:50:59     T extends Object declared in class Class
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
14:51:00             originalLink.setChild(annotationClass.newInstance());
14:51:00                                                  ^
14:51:00   where T is a type-variable:
14:51:00     T extends Object declared in class Class
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:51:00         RoiResult r = svc.findByImage(id, new RoiOptions());
14:51:00                          ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:51:00         final RawAccessRequest request = new RawAccessRequest();
14:51:00               ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:51:00         final RawAccessRequest request = new RawAccessRequest();
14:51:00                                              ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:51:00         request.repoUuid = repo.root().getHash().getValue();
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
14:51:00         request.command = "exists";
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
14:51:00         request.args = Collections.singletonList(dirPath);
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:51:00         final RawAccessRequest request = new RawAccessRequest();
14:51:00               ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:51:00         final RawAccessRequest request = new RawAccessRequest();
14:51:00                                              ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:51:00         request.repoUuid = repo.root().getHash().getValue();
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
14:51:00         request.command = "exists";
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
14:51:00         request.args = Collections.singletonList(dirName);
14:51:00                ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:51:00             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
14:51:00                                      ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
14:51:00         final ImportJob importJob = new ImportJobI();
14:51:00               ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:51:00         final ImportJob importJob = new ImportJobI();
14:51:00                                         ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
14:51:00         importJob.setImageName(omero.rtypes.rstring(name));
14:51:00                  ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
14:51:00         importJob.setImageDescription(omero.rtypes.rstring(desc));
14:51:00                  ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:51:00         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:51:00         ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:51:00         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:51:00                           ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:51:00         final String savedName = sent.getImageName().getValue().toString();
14:51:00                                      ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:51:00         final String savedDesc = sent.getImageDescription().getValue().toString();
14:51:00                                      ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:51:00         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:51:00               ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:51:00         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:51:00                                               ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:51:00         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
14:51:00                                                        ^
14:51:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:51:00         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
14:51:00                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         RoiResult r = svc.findByImage(image.getId().getValue(),
14:51:01                          ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:51:01                                 ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:51:01                                 ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
14:51:01         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
14:51:01                                          ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:51:01                                 ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
14:51:01         table = svc.getTable(f.getId().getValue());
14:51:01                    ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         RoiResult r = svc.findByImage(image.getId().getValue(),
14:51:01                          ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:51:01         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:51:01         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:51:01         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
14:51:01                ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:51:01                   ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:51:01                                   ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:51:01                                    ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:51:01                                                    ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
14:51:01             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:51:01                                       ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:51:01                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:51:01                                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:51:01                                                         ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:51:01                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:51:01                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:51:01                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:51:01         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:51:01                                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:51:01                 svc.getShapeStatsRestricted(
14:51:01                    ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:51:01         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
14:51:01                                        ^
14:51:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:51:01         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:51:01                                      ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:51:02         request.typesToIgnore = Collections.singletonList("TagAnnotation");
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:51:02         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:51:02         request.typesToIgnore = Collections.singletonList("Annotation");
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:51:02                     request.typesToIgnore = Collections.singletonList("Annotation");
14:51:02                            ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:51:02         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:51:02                                      ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:51:02         p2.setRelatedTo(p1);
14:51:02           ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:51:02         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
14:51:02                                           ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:51:02         pixels1.setRelatedTo(pixels2);
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:51:02         Pixels pixels = pixels1.getRelatedTo();
14:51:02                                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:51:02         Assert.assertNull(pixels1.getRelatedTo());
14:51:02                                  ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:51:02         pixels1.setRelatedTo(pixels2);
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:51:02         Pixels pixels = pixels1.getRelatedTo();
14:51:02                                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:51:02         Assert.assertNull(pixels1.getRelatedTo());
14:51:02                                  ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:02         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:51:02                                 ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:02         l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:51:02                ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:02         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:51:02                                 ^
14:51:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:51:02         l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:51:02                ^
14:51:02 Note: Some input files use unchecked or unsafe operations.
14:51:02 Note: Recompile with -Xlint:unchecked for details.
14:51:02 92 warnings
14:51:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1814770791.tmp
14:51:02 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
14:51:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:51:03 :: delivering :: omero#OmeroJava-test;working@8bdefdc8cc5f :: 5.6.3-675-ea14a7366e-ice36-b58 :: integration :: Fri Aug 21 14:50:45 UTC 2026
14:51:03 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
14:51:03 :: publishing :: omero#OmeroJava-test
14:51:03 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-675-ea14a7366e-ice36-b58.jar
14:51:03 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-675-ea14a7366e-ice36-b58.xml
14:51:03 
14:51:03 build-eclipse:
14:51:03 No sub-builds to iterate on
14:51:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:51:04 
14:51:04 retrieve:
14:51:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:51:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:51:08 
14:51:08 prepare:
14:51:08 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:51:12 
14:51:12 release-clients:
14:51:12 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-675-ea14a7366e-ice36-b58.zip
14:51:19 
14:51:19 release-zip:
14:51:19 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-675-ea14a7366e-ice36-b58.zip
14:51:33 
14:51:33 BUILD SUCCESSFUL
14:51:33 Total time: 4 minutes 35 seconds
14:51:33 ++ '[' -d .git ']'
14:51:33 ++ python3 ./build.py release-src
14:51:34 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:51:34 
14:51:34 release-src-git:
14:51:34 Releasing openmicroscopy-5.6.3-675-ea14a7366e-ice36-b58
14:51:36   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-675-ea14a7366e-ice36-b58.zip
14:51:36   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-675-ea14a7366e-ice36-b58-base.zip
14:51:38 
14:51:38 BUILD SUCCESSFUL
14:51:38 Total time: 4 seconds
14:51:38 ++ echo BUILD_NUMBER=58
14:51:38 ++ echo OMERO_BRANCH=merge_ci
14:51:38 ++ git_info
14:51:38 +++ git rev-parse HEAD
14:51:38 ++ HEAD=ea14a7366ee8807abc1e35a9cacc1aeac2df51e0
14:51:38 ++ git log --max-count=1 ea14a7366ee8807abc1e35a9cacc1aeac2df51e0
14:51:38 ++ env
14:51:38 ++ sort
14:51:38 Archiving artifacts
14:51:59 Finished: SUCCESS