01:28:01Started by upstream project "Trigger" build number 6901:28:01originally caused by:
01:28:01 Started by timer
01:28:01Running as SYSTEM
01:28:01Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:28:01The recommended git tool is: NONE
01:28:01No credentials specified
01:28:01 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:28:01Fetching changes from the remote Git repository
01:28:02 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:28:02Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:28:02 > git --version # timeout=10
01:28:02 > git --version # 'git version 2.52.0'
01:28:02 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:28:12 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:28:12Checking out Revision ca157c25f4fd1456df2f25fd598869dafdd46bf1 (origin/merge_ci)
01:28:12 > git config core.sparsecheckout # timeout=10
01:28:12 > git checkout -f ca157c25f4fd1456df2f25fd598869dafdd46bf1 # timeout=10
01:28:28Commit message: "Add version.properties to etc/omero.properties"
01:28:28 > git rev-list --no-walk 3891c34714a6d872700d31bcd78ddf32940f848b # timeout=10
01:28:28Cleaning workspace
01:28:28 > git rev-parse --verify HEAD # timeout=10
01:28:28Resetting working tree
01:28:28 > git reset --hard # timeout=10
01:28:29 > git clean -fdx # timeout=10
01:28:59Copied 6 artifacts from "OMERO-python-superbuild-build" build number 5201:28:59[OMERO-build] $ /bin/bash -xe /tmp/jenkins1044318969520711512.sh
01:28:59+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:28:59+ cd src
01:28:59+ export OMERO_BRANCH=merge_ci
01:28:59+ OMERO_BRANCH=merge_ci
01:28:59+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:28:59+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:29:26+ source /home/omero/settings.env
01:29:26++ OMERO_DB_HOST=pg
01:29:26++ OMERO_DB_USER=postgres
01:29:26++ OMERO_DB_PASS=
01:29:26++ OMERO_ROOT_PASS=omero
01:29:26++ OMERO_DATA_DIR=/OMERO
01:29:26++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:29:26+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:29:45+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:29:47Collecting zeroc-ice==3.6.5
01:29:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:29:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.9 MB/s eta 0:00:00
01:29:50Installing collected packages: zeroc-ice
01:29:54Successfully installed zeroc-ice-3.6.5
01:29:5401:29:54[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:29:54[notice] To update, run: python3.11 -m pip install --upgrade pip
01:29:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:29:55Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:29:55Collecting setuptools<66
01:29:55 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:29:55Collecting omero-py
01:29:55 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:29:55Collecting appdirs
01:29:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:29:56Collecting future
01:29:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:29:56Collecting numpy<3,>=2
01:29:57 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:29:57Collecting Pillow>=10.0.0
01:29:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:29:58Collecting PyYAML
01:29:58 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:29:58Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:29:58Collecting requests
01:29:58 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:29:58Collecting portalocker
01:29:58 Using cached portalocker-4.2.0-py3-none-any.whl (128 kB)
01:29:59Collecting charset_normalizer<4,>=2
01:29:59 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
01:29:59Collecting idna<4,>=2.5
01:29:59 Using cached idna-3.19-py3-none-any.whl (68 kB)
01:29:59Collecting urllib3<3,>=1.26
01:29:59 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:29:59Collecting certifi>=2023.5.7
01:29:59 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:29:59Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:30:00 Attempting uninstall: setuptools
01:30:00 Found existing installation: setuptools 65.5.1
01:30:01 Uninstalling setuptools-65.5.1:
01:30:01 Successfully uninstalled setuptools-65.5.1
01:31:04Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:31:0401:31:04[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:31:04[notice] To update, run: python3.11 -m pip install --upgrade pip
01:31:04+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:31:04++ deactivate nondestructive
01:31:04++ '[' -n '' ']'
01:31:04++ '[' -n '' ']'
01:31:04++ hash -r
01:31:04++ '[' -n '' ']'
01:31:04++ unset VIRTUAL_ENV
01:31:04++ unset VIRTUAL_ENV_PROMPT
01:31:04++ '[' '!' nondestructive = nondestructive ']'
01:31:04++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:31:04++ export VIRTUAL_ENV
01:31:04++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:31:04++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:31:04++ export PATH
01:31:04++ '[' -n '' ']'
01:31:04++ '[' -z '' ']'
01:31:04++ _OLD_VIRTUAL_PS1=
01:31:04++ PS1='(omero-virtualenv) '
01:31:04++ export PS1
01:31:04++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:31:04++ export VIRTUAL_ENV_PROMPT
01:31:04++ hash -r
01:31:04+ source docs/hudson/OMERO.sh
01:31:04++ set -e
01:31:04++ set -u
01:31:04++ set -x
01:31:04++ source docs/hudson/functions.sh
01:31:04++ echo Building merge_ci
01:31:04Building merge_ci
01:31:04++ python3 ./build.py build-dev release-all
01:31:05Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:31:0601:31:06check-ivy:
01:31:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/target
01:31:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:31:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:31:0801:31:08build-scons:
01:31:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:31:13No sub-builds to iterate on
01:31:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:31:1401:31:14buildlist:
01:31:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:31:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:31:1501:31:15clean:
01:31:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:31:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:31:1601:31:16python-clean:
01:31:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:31:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-676-ca157c25f4-ice36-b62') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:31:16 warnings.warn(
01:31:16running clean
01:31:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:31:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:31:1801:31:18python-clean:
01:31:18WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:31:18/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-676-ca157c25f4-ice36-b62') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:31:18 warnings.warn(
01:31:18running clean
01:31:18Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:31:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:31:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:31:1901:31:19python-clean:
01:31:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:31:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-676-ca157c25f4-ice36-b62') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:31:19 warnings.warn(
01:31:19running clean
01:31:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:31:20Deleting directory /home/omero/workspace/OMERO-build/src/target
01:31:2101:31:21build-scons:
01:31:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:31:3001:31:30build:
01:31:30No sub-builds to iterate on
01:31:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:31:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:31:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:31:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:31:3201:31:32tools-init:
01:31:32no-op
01:31:3201:31:32retrieve:
01:31:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:31:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:3001:36:30prepare:
01:36:30Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:36:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:3101:36:31pre-compile:
01:36:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:5101:36:51compile:
01:36:51no-op
01:36:5101:36:51package:
01:36:51Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:36:5401:36:54install:
01:36:54:: delivering :: omero#omero_client;working@acc0a653a340 :: 5.6.3-676-ca157c25f4-ice36-b62 :: integration :: Tue Aug 25 01:31:31 UTC 2026
01:36:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:36:54:: publishing :: omero#omero_client
01:36:55 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-676-ca157c25f4-ice36-b62/omero_client-5.6.3-676-ca157c25f4-ice36-b62.jar
01:36:55 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-676-ca157c25f4-ice36-b62/omero_client-5.6.3-676-ca157c25f4-ice36-b62.xml
01:36:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:36:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:36:5601:36:56retrieve:
01:36:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:36:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:36:5701:36:57dist:
01:36:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:36:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:36:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:36:57Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:36:57Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:36:58Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:36:58Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:36:58Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:36:59Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:37:0001:37:00copy-licenses:
01:37:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:37:00Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:37:00Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:37:0001:37:00copy-history:
01:37:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:37:0001:37:00copy-etc:
01:37:00Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:37:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:37:0101:37:01copy-sql:
01:37:01Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:38:2901:38:29copy-server:
01:38:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:38:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
01:38:3601:38:36copy-client:
01:38:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:38:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:38:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
01:38:4901:38:49update-version:
01:38:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:38:4901:38:49create-workdirs:
01:38:49Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:38:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:38:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:38:4901:38:49copy-luts:
01:38:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:38:49Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:38:5001:38:50test-compile:
01:38:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:38:5301:38:53testng-init:
01:38:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:38:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:0101:39:01,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:39:0101:39:01,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - No custom configurators were discovered as a service.
01:39:0101:39:01,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:39:0101:39:01,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:39:0101:39:01,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:39:0101:39:01,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:39:0101:39:01,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:39:0101:39:01,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:39:0101:39:01,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:39:0101:39:01,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:39:0101:39:01,052 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:39:0101:39:01,054 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@903d2ee - Resource [logback.xml] occurs multiple times on the classpath.
01:39:0101:39:01,054 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@903d2ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:39:0101:39:01,054 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@903d2ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:39:0101:39:01,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:39:0101:39:01,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:39:0101:39:01,305 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:39:0101:39:01,307 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@528a828c - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:39:0101:39:01,307 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@528a828c - Please move "immediateFlush" property into the enclosing appender.
01:39:0101:39:01,380 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@528a828c - Setting the "immediateFlush" property of the enclosing appender to true
01:39:0101:39:01,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:39:0101:39:01,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:39:0101:39:01,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:39:0101:39:01,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:39:0101:39:01,381 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:39:0101:39:01,381 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:39:0101:39:01,382 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@375527e2 - End of configuration.
01:39:0101:39:01,385 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3032aa88 - Registering current configuration as safe fallback point
01:39:0101:39:01,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7affa3fb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 338 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:39:0101:39:01lifecycle.test-compile:
01:39:01Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:39:01Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:39:01warning: [options] bootstrap class path not set in conjunction with -source 8
01:39:01warning: [options] source value 8 is obsolete and will be removed in a future release
01:39:01warning: [options] target value 8 is obsolete and will be removed in a future release
01:39:01warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:39:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:03import omero.grid.RawAccessRequest;
01:39:03 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:04import omero.grid.RawAccessRequest;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:04import omero.grid.RawAccessRequest;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:04import omero.model.ImportJob;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:39:04import omero.model.ImportJobI;
01:39:04 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
01:39:05 IObject link = (IObject) linkClass.newInstance();
01:39:05 ^
01:39:05 where T is a type-variable:
01:39:05 T extends Object declared in class Class
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:39:05 T copy = (T) obj.getClass().newInstance();
01:39:05 ^
01:39:05 where T is a type-variable:
01:39:05 T extends Object declared in class Class
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:05 RawAccessRequest raw = new RawAccessRequest();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:05 RawAccessRequest raw = new RawAccessRequest();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:05 raw.repoUuid = legacy.root().getHash().getValue();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:05 raw.command = "rm";
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:05 raw.args = Arrays.asList(path);
01:39:05 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:39:06 final IObject link = linkClass.newInstance();
01:39:06 ^
01:39:06 where T is a type-variable:
01:39:06 T extends Object declared in class Class
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:39:06 originalLink.setChild(annotationClass.newInstance());
01:39:06 ^
01:39:06 where T is a type-variable:
01:39:06 T extends Object declared in class Class
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:06 RoiResult r = svc.findByImage(id, new RoiOptions());
01:39:06 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:07 final RawAccessRequest request = new RawAccessRequest();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:07 final RawAccessRequest request = new RawAccessRequest();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:07 request.repoUuid = repo.root().getHash().getValue();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:07 request.command = "exists";
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:07 request.args = Collections.singletonList(dirPath);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:07 final RawAccessRequest request = new RawAccessRequest();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:07 final RawAccessRequest request = new RawAccessRequest();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:07 request.repoUuid = repo.root().getHash().getValue();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:07 request.command = "exists";
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:07 request.args = Collections.singletonList(dirName);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob importJob = new ImportJobI();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:39:07 final ImportJob importJob = new ImportJobI();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:39:07 importJob.setImageName(omero.rtypes.rstring(name));
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:39:07 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:39:07 final String savedName = sent.getImageName().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:39:07 final String savedDesc = sent.getImageDescription().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:39:07 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:39:07 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:39:07 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 RoiResult r = svc.findByImage(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:39:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:39:08 table = svc.getTable(f.getId().getValue());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 RoiResult r = svc.findByImage(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:39:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:39:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:39:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:39:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:39:08 svc.getShapeStatsRestricted(
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:39:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:08 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:08 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:08 request.typesToIgnore = Collections.singletonList("Annotation");
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:08 request.typesToIgnore = Collections.singletonList("Annotation");
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:08 p2.setRelatedTo(p1);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:08 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:08 pixels1.setRelatedTo(pixels2);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:08 Pixels pixels = pixels1.getRelatedTo();
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:08 Assert.assertNull(pixels1.getRelatedTo());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:08 pixels1.setRelatedTo(pixels2);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:08 Pixels pixels = pixels1.getRelatedTo();
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:08 Assert.assertNull(pixels1.getRelatedTo());
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:08 ^
01:39:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:08 ^
01:39:09Note: Some input files use unchecked or unsafe operations.
01:39:09Note: Recompile with -Xlint:unchecked for details.
01:39:0992 warnings
01:39:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_712364072.tmp
01:39:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:39:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:09:: delivering :: omero#OmeroJava-test;working@acc0a653a340 :: 5.6.3-676-ca157c25f4-ice36-b62 :: integration :: Tue Aug 25 01:38:52 UTC 2026
01:39:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:39:09:: publishing :: omero#OmeroJava-test
01:39:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-676-ca157c25f4-ice36-b62.jar
01:39:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-676-ca157c25f4-ice36-b62.xml
01:39:0901:39:09build-eclipse:
01:39:09No sub-builds to iterate on
01:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:39:1001:39:10retrieve:
01:39:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:39:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:1401:39:14prepare:
01:39:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:39:1801:39:18release-clients:
01:39:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-676-ca157c25f4-ice36-b62.zip
01:39:2501:39:25release-zip:
01:39:25Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-676-ca157c25f4-ice36-b62.zip
01:39:4001:39:40BUILD SUCCESSFUL
01:39:40Total time: 8 minutes 35 seconds
01:39:40++ '[' -d .git ']'
01:39:40++ python3 ./build.py release-src
01:39:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:39:4101:39:41release-src-git:
01:39:41Releasing openmicroscopy-5.6.3-676-ca157c25f4-ice36-b62
01:39:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-676-ca157c25f4-ice36-b62.zip
01:39:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-676-ca157c25f4-ice36-b62-base.zip
01:39:4401:39:44BUILD SUCCESSFUL
01:39:44Total time: 4 seconds
01:39:44++ echo BUILD_NUMBER=62
01:39:44++ echo OMERO_BRANCH=merge_ci
01:39:44++ git_info
01:39:44+++ git rev-parse HEAD
01:39:44++ HEAD=ca157c25f4fd1456df2f25fd598869dafdd46bf1
01:39:44++ git log --max-count=1 ca157c25f4fd1456df2f25fd598869dafdd46bf1
01:39:44++ env
01:39:44++ sort
01:39:44Archiving artifacts
01:40:05Finished: SUCCESS
