15:39:28Started by upstream project "Trigger" build number 7415:39:28originally caused by:
15:39:28 Started by user devspace15:39:28Running as SYSTEM
15:39:28Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
15:39:28The recommended git tool is: NONE
15:39:28No credentials specified
15:39:28 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
15:39:28Fetching changes from the remote Git repository
15:39:28 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
15:39:28Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git15:39:28 > git --version # timeout=10
15:39:28 > git --version # 'git version 2.52.0'
15:39:28 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
15:39:34 > git rev-parse origin/merge_ci^{commit} # timeout=10
15:39:34Checking out Revision bb9a982cb3506b5687493c05f98e97b1576d664c (origin/merge_ci)
15:39:34 > git config core.sparsecheckout # timeout=10
15:39:34 > git checkout -f bb9a982cb3506b5687493c05f98e97b1576d664c # timeout=10
15:39:54Commit message: "Add version.properties to etc/omero.properties"
15:39:54 > git rev-list --no-walk ca157c25f4fd1456df2f25fd598869dafdd46bf1 # timeout=10
15:39:54Cleaning workspace
15:39:54 > git rev-parse --verify HEAD # timeout=10
15:39:54Resetting working tree
15:39:54 > git reset --hard # timeout=10
15:39:55 > git clean -fdx # timeout=10
15:40:53Copied 6 artifacts from "OMERO-python-superbuild-build" build number 5415:40:53[OMERO-build] $ /bin/bash -xe /tmp/jenkins15588443651157173088.sh
15:40:53+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
15:40:53+ cd src
15:40:53+ export OMERO_BRANCH=merge_ci
15:40:53+ OMERO_BRANCH=merge_ci
15:40:53+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
15:40:53+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
15:41:37+ source /home/omero/settings.env
15:41:37++ OMERO_DB_HOST=pg
15:41:37++ OMERO_DB_USER=postgres
15:41:37++ OMERO_DB_PASS=
15:41:37++ OMERO_ROOT_PASS=omero
15:41:37++ OMERO_DATA_DIR=/OMERO
15:41:37++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:41:37+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
15:41:55+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl15:41:56Collecting zeroc-ice==3.6.5
15:41:57 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
15:42:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
15:42:00Installing collected packages: zeroc-ice
15:42:04Successfully installed zeroc-ice-3.6.5
15:42:0415:42:04[notice] A new release of pip available: 22.3.1 -> 26.2.1
15:42:04[notice] To update, run: python3.11 -m pip install --upgrade pip
15:42:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
15:42:05Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
15:42:05Collecting setuptools<66
15:42:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
15:42:05Collecting omero-py
15:42:05 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
15:42:05Collecting appdirs
15:42:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:42:06Collecting future
15:42:06 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:42:06Collecting numpy<3,>=2
15:42:06 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
15:42:07Collecting Pillow>=10.0.0
15:42:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
15:42:07Collecting PyYAML
15:42:07 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:42:07Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
15:42:07Collecting requests
15:42:07 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
15:42:08Collecting portalocker
15:42:08 Downloading portalocker-4.3.0-py3-none-any.whl (129 kB)
15:42:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 129.6/129.6 kB 2.2 MB/s eta 0:00:00
15:42:08Collecting charset_normalizer<4,>=2
15:42:08 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
15:42:08Collecting idna<4,>=2.5
15:42:08 Using cached idna-3.19-py3-none-any.whl (68 kB)
15:42:08Collecting urllib3<3,>=1.26
15:42:08 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
15:42:09Collecting certifi>=2023.5.7
15:42:09 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
15:42:09Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
15:42:10 Attempting uninstall: setuptools
15:42:10 Found existing installation: setuptools 65.5.1
15:42:10 Uninstalling setuptools-65.5.1:
15:42:11 Successfully uninstalled setuptools-65.5.1
15:43:02Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
15:43:0215:43:02[notice] A new release of pip available: 22.3.1 -> 26.2.1
15:43:02[notice] To update, run: python3.11 -m pip install --upgrade pip
15:43:02+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
15:43:02++ deactivate nondestructive
15:43:02++ '[' -n '' ']'
15:43:02++ '[' -n '' ']'
15:43:02++ hash -r
15:43:02++ '[' -n '' ']'
15:43:02++ unset VIRTUAL_ENV
15:43:02++ unset VIRTUAL_ENV_PROMPT
15:43:02++ '[' '!' nondestructive = nondestructive ']'
15:43:02++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
15:43:02++ export VIRTUAL_ENV
15:43:02++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:43:02++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:43:02++ export PATH
15:43:02++ '[' -n '' ']'
15:43:02++ '[' -z '' ']'
15:43:02++ _OLD_VIRTUAL_PS1=
15:43:02++ PS1='(omero-virtualenv) '
15:43:02++ export PS1
15:43:02++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
15:43:02++ export VIRTUAL_ENV_PROMPT
15:43:02++ hash -r
15:43:02+ source docs/hudson/OMERO.sh
15:43:02++ set -e
15:43:02++ set -u
15:43:02++ set -x
15:43:02++ source docs/hudson/functions.sh
15:43:02++ echo Building merge_ci
15:43:02Building merge_ci
15:43:02++ python3 ./build.py build-dev release-all
15:43:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:43:0315:43:03check-ivy:
15:43:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
15:43:03Created dir: /home/omero/workspace/OMERO-build/src/target
15:43:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:43:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:43:0515:43:05build-scons:
15:43:05Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:43:07No sub-builds to iterate on
15:43:07Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:43:0715:43:07buildlist:
15:43:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:43:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:43:0815:43:08clean:
15:43:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:43:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:43:0915:43:09python-clean:
15:43:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:43:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-bb9a982cb3-ice36-b63') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:43:09 warnings.warn(
15:43:09running clean
15:43:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
15:43:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:43:1015:43:10python-clean:
15:43:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:43:10/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-bb9a982cb3-ice36-b63') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:43:10 warnings.warn(
15:43:10running clean
15:43:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
15:43:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:43:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:43:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:43:1115:43:11python-clean:
15:43:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:43:11/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-bb9a982cb3-ice36-b63') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:43:11 warnings.warn(
15:43:11running clean
15:43:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
15:43:11Deleting directory /home/omero/workspace/OMERO-build/src/target
15:43:1215:43:12build-scons:
15:43:12Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:43:1415:43:14build:
15:43:14No sub-builds to iterate on
15:43:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:43:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:43:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:43:1615:43:16tools-init:
15:43:16no-op
15:43:1615:43:16retrieve:
15:43:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:43:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:45:2915:45:29prepare:
15:45:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:45:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:45:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:45:2915:45:29pre-compile:
15:45:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:45:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:45:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:45:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:45:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:45:4515:45:45compile:
15:45:45no-op
15:45:4515:45:45package:
15:45:45Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
15:45:4815:45:48install:
15:45:48:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-bb9a982cb3-ice36-b63 :: integration :: Fri Aug 28 15:43:15 UTC 2026
15:45:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
15:45:48:: publishing :: omero#omero_client
15:45:48 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-bb9a982cb3-ice36-b63/omero_client-5.6.3-677-bb9a982cb3-ice36-b63.jar
15:45:48 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-bb9a982cb3-ice36-b63/omero_client-5.6.3-677-bb9a982cb3-ice36-b63.xml
15:45:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:45:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:45:4915:45:49retrieve:
15:45:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:45:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:45:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:45:5015:45:50dist:
15:45:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
15:45:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
15:45:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:45:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:45:51Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
15:45:51Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
15:45:51Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
15:45:52Entering /home/omero/workspace/OMERO-build/src/components/tests...
15:45:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:45:5315:45:53copy-licenses:
15:45:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:45:53Created dir: /home/omero/workspace/OMERO-build/src/dist/share
15:45:53Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
15:45:5415:45:54copy-history:
15:45:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:45:5415:45:54copy-etc:
15:45:54Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
15:45:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
15:45:5415:45:54copy-sql:
15:45:54Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
15:46:3015:46:30copy-server:
15:46:30 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
15:46:30 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
15:46:3715:46:37copy-client:
15:46:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
15:46:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
15:46:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
15:46:5015:46:50update-version:
15:46:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
15:46:5015:46:50create-workdirs:
15:46:50Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
15:46:50Created dir: /home/omero/workspace/OMERO-build/src/dist/var
15:46:50Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
15:46:5015:46:50copy-luts:
15:46:50Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:46:50Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:46:5015:46:50test-compile:
15:46:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:46:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:46:5315:46:53testng-init:
15:46:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:46:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:47:0115:47:01,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
15:47:0115:47:01,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - No custom configurators were discovered as a service.
15:47:0115:47:01,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:47:0115:47:01,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:47:0115:47:01,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:47:0115:47:01,256 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:47:0115:47:01,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:47:0115:47:01,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:47:0115:47:01,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:47:0115:47:01,262 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:47:0115:47:01,263 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:47:0115:47:01,265 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4df1bec - Resource [logback.xml] occurs multiple times on the classpath.
15:47:0115:47:01,265 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4df1bec - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:47:0115:47:01,265 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4df1bec - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:47:0115:47:01,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:47:0115:47:01,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:47:0115:47:01,504 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:47:0115:47:01,506 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22e9424e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:47:0115:47:01,506 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22e9424e - Please move "immediateFlush" property into the enclosing appender.
15:47:0115:47:01,572 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22e9424e - Setting the "immediateFlush" property of the enclosing appender to true
15:47:0115:47:01,573 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:47:0115:47:01,573 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:47:0115:47:01,573 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:47:0115:47:01,573 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:47:0115:47:01,573 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:47:0115:47:01,573 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:47:0115:47:01,574 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3afab566 - End of configuration.
15:47:0115:47:01,576 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4b693be7 - Registering current configuration as safe fallback point
15:47:0115:47:01,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b7f53a5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 317 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:47:0115:47:01lifecycle.test-compile:
15:47:01Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:47:01Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:47:02warning: [options] bootstrap class path not set in conjunction with -source 8
15:47:02warning: [options] source value 8 is obsolete and will be removed in a future release
15:47:02warning: [options] target value 8 is obsolete and will be removed in a future release
15:47:02warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
15:47:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:03import omero.grid.RawAccessRequest;
15:47:03 ^
15:47:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:04import omero.grid.RawAccessRequest;
15:47:04 ^
15:47:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:04import omero.grid.RawAccessRequest;
15:47:04 ^
15:47:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:04import omero.model.ImportJob;
15:47:04 ^
15:47:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:47:04import omero.model.ImportJobI;
15:47:04 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
15:47:05 IObject link = (IObject) linkClass.newInstance();
15:47:05 ^
15:47:05 where T is a type-variable:
15:47:05 T extends Object declared in class Class
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
15:47:05 T copy = (T) obj.getClass().newInstance();
15:47:05 ^
15:47:05 where T is a type-variable:
15:47:05 T extends Object declared in class Class
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:05 RawAccessRequest raw = new RawAccessRequest();
15:47:05 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:05 RawAccessRequest raw = new RawAccessRequest();
15:47:05 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:47:05 raw.repoUuid = legacy.root().getHash().getValue();
15:47:05 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
15:47:05 raw.command = "rm";
15:47:05 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
15:47:05 raw.args = Arrays.asList(path);
15:47:05 ^
15:47:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
15:47:05 final IObject link = linkClass.newInstance();
15:47:05 ^
15:47:05 where T is a type-variable:
15:47:05 T extends Object declared in class Class
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
15:47:06 originalLink.setChild(annotationClass.newInstance());
15:47:06 ^
15:47:06 where T is a type-variable:
15:47:06 T extends Object declared in class Class
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:47:06 RoiResult r = svc.findByImage(id, new RoiOptions());
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:06 final RawAccessRequest request = new RawAccessRequest();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:06 final RawAccessRequest request = new RawAccessRequest();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:47:06 request.repoUuid = repo.root().getHash().getValue();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
15:47:06 request.command = "exists";
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
15:47:06 request.args = Collections.singletonList(dirPath);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:06 final RawAccessRequest request = new RawAccessRequest();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:47:06 final RawAccessRequest request = new RawAccessRequest();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:47:06 request.repoUuid = repo.root().getHash().getValue();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
15:47:06 request.command = "exists";
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
15:47:06 request.args = Collections.singletonList(dirName);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:47:06 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:06 final ImportJob importJob = new ImportJobI();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:47:06 final ImportJob importJob = new ImportJobI();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
15:47:06 importJob.setImageName(omero.rtypes.rstring(name));
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
15:47:06 importJob.setImageDescription(omero.rtypes.rstring(desc));
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:06 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:06 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:47:06 final String savedName = sent.getImageName().getValue().toString();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:47:06 final String savedDesc = sent.getImageDescription().getValue().toString();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:06 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:47:06 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:47:06 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
15:47:06 ^
15:47:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:47:06 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
15:47:06 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 RoiResult r = svc.findByImage(image.getId().getValue(),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
15:47:07 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
15:47:07 table = svc.getTable(f.getId().getValue());
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 RoiResult r = svc.findByImage(image.getId().getValue(),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:47:07 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:47:07 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:47:07 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
15:47:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:47:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:47:07 svc.getShapeStatsRestricted(
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:47:07 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
15:47:07 ^
15:47:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:47:07 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:47:07 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:47:08 request.typesToIgnore = Collections.singletonList("TagAnnotation");
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:47:08 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:47:08 request.typesToIgnore = Collections.singletonList("Annotation");
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:47:08 request.typesToIgnore = Collections.singletonList("Annotation");
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:47:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:47:08 p2.setRelatedTo(p1);
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:47:08 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:47:08 pixels1.setRelatedTo(pixels2);
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:47:08 Pixels pixels = pixels1.getRelatedTo();
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:47:08 Assert.assertNull(pixels1.getRelatedTo());
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:47:08 pixels1.setRelatedTo(pixels2);
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:47:08 Pixels pixels = pixels1.getRelatedTo();
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:47:08 Assert.assertNull(pixels1.getRelatedTo());
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:47:08 ^
15:47:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:47:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:47:08 ^
15:47:08Note: Some input files use unchecked or unsafe operations.
15:47:08Note: Recompile with -Xlint:unchecked for details.
15:47:0892 warnings
15:47:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1910044243.tmp
15:47:08Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
15:47:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:47:09:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-bb9a982cb3-ice36-b63 :: integration :: Fri Aug 28 15:46:53 UTC 2026
15:47:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:47:09:: publishing :: omero#OmeroJava-test
15:47:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-bb9a982cb3-ice36-b63.jar
15:47:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-bb9a982cb3-ice36-b63.xml
15:47:0915:47:09build-eclipse:
15:47:09No sub-builds to iterate on
15:47:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:47:0915:47:09retrieve:
15:47:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:47:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:47:1415:47:14prepare:
15:47:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:47:1715:47:17release-clients:
15:47:17Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-bb9a982cb3-ice36-b63.zip
15:47:2415:47:24release-zip:
15:47:24Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-bb9a982cb3-ice36-b63.zip
15:47:3715:47:37BUILD SUCCESSFUL
15:47:37Total time: 4 minutes 35 seconds
15:47:37++ '[' -d .git ']'
15:47:37++ python3 ./build.py release-src
15:47:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:47:3915:47:39release-src-git:
15:47:39Releasing openmicroscopy-5.6.3-677-bb9a982cb3-ice36-b63
15:47:40 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-bb9a982cb3-ice36-b63.zip
15:47:40 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-bb9a982cb3-ice36-b63-base.zip
15:47:4215:47:42BUILD SUCCESSFUL
15:47:42Total time: 4 seconds
15:47:42++ echo BUILD_NUMBER=63
15:47:42++ echo OMERO_BRANCH=merge_ci
15:47:42++ git_info
15:47:42+++ git rev-parse HEAD
15:47:42++ HEAD=bb9a982cb3506b5687493c05f98e97b1576d664c
15:47:42++ git log --max-count=1 bb9a982cb3506b5687493c05f98e97b1576d664c
15:47:42++ env
15:47:42++ sort
15:47:42Archiving artifacts
15:48:00Finished: SUCCESS
