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00:53:49 Started by upstream project "Trigger" build number 75
00:53:49 originally caused by:
00:53:49  Started by timer
00:53:49 Running as SYSTEM
00:53:49 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:53:49 The recommended git tool is: NONE
00:53:49 No credentials specified
00:53:49  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:53:49 Fetching changes from the remote Git repository
00:53:49  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:53:49 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
00:53:49  > git --version # timeout=10
00:53:49  > git --version # 'git version 2.52.0'
00:53:49  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:53:54  > git rev-parse origin/merge_ci^{commit} # timeout=10
00:53:54 Checking out Revision 3ebb95c6db49739795fcbb4abc55a0818348c6bb (origin/merge_ci)
00:53:54  > git config core.sparsecheckout # timeout=10
00:53:54  > git checkout -f 3ebb95c6db49739795fcbb4abc55a0818348c6bb # timeout=10
00:53:55 Commit message: "Add version.properties to etc/omero.properties"
00:53:55  > git rev-list --no-walk bb9a982cb3506b5687493c05f98e97b1576d664c # timeout=10
00:53:56 Cleaning workspace
00:53:56  > git rev-parse --verify HEAD # timeout=10
00:53:56 Resetting working tree
00:53:56  > git reset --hard # timeout=10
00:53:56  > git clean -fdx # timeout=10
00:54:39 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 55
00:54:39 [OMERO-build] $ /bin/bash -xe /tmp/jenkins8104662857139478109.sh
00:54:39 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
00:54:39 + cd src
00:54:39 + export OMERO_BRANCH=merge_ci
00:54:39 + OMERO_BRANCH=merge_ci
00:54:39 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:54:39 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:55:13 + source /home/omero/settings.env
00:55:13 ++ OMERO_DB_HOST=pg
00:55:13 ++ OMERO_DB_USER=postgres
00:55:13 ++ OMERO_DB_PASS=
00:55:13 ++ OMERO_ROOT_PASS=omero
00:55:13 ++ OMERO_DATA_DIR=/OMERO
00:55:13 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:55:13 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:55:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:55:33 Collecting zeroc-ice==3.6.5
00:55:33   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:55:36      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
00:55:36 Installing collected packages: zeroc-ice
00:55:40 Successfully installed zeroc-ice-3.6.5
00:55:40 
00:55:40 [notice] A new release of pip available: 22.3.1 -> 26.2.1
00:55:40 [notice] To update, run: python3.11 -m pip install --upgrade pip
00:55:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:55:41 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:55:41 Collecting setuptools<66
00:55:41   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:55:41 Collecting omero-py
00:55:41   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
00:55:41 Collecting appdirs
00:55:41   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:55:41 Collecting future
00:55:42   Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:55:42 Collecting numpy<3,>=2
00:55:42   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:55:43 Collecting Pillow>=10.0.0
00:55:43   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
00:55:43 Collecting PyYAML
00:55:43   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:55:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:55:43 Collecting requests
00:55:43   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
00:55:43 Collecting portalocker
00:55:43   Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
00:55:44 Collecting charset_normalizer<4,>=2
00:55:44   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
00:55:44 Collecting idna<4,>=2.5
00:55:44   Using cached idna-3.19-py3-none-any.whl (68 kB)
00:55:44 Collecting urllib3<3,>=1.26
00:55:44   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
00:55:44 Collecting certifi>=2023.5.7
00:55:44   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
00:55:44 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:55:45   Attempting uninstall: setuptools
00:55:45     Found existing installation: setuptools 65.5.1
00:55:46     Uninstalling setuptools-65.5.1:
00:55:46       Successfully uninstalled setuptools-65.5.1
00:56:38 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
00:56:38 
00:56:38 [notice] A new release of pip available: 22.3.1 -> 26.2.1
00:56:38 [notice] To update, run: python3.11 -m pip install --upgrade pip
00:56:38 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:56:38 ++ deactivate nondestructive
00:56:38 ++ '[' -n '' ']'
00:56:38 ++ '[' -n '' ']'
00:56:38 ++ hash -r
00:56:38 ++ '[' -n '' ']'
00:56:38 ++ unset VIRTUAL_ENV
00:56:38 ++ unset VIRTUAL_ENV_PROMPT
00:56:38 ++ '[' '!' nondestructive = nondestructive ']'
00:56:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:56:38 ++ export VIRTUAL_ENV
00:56:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:38 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:38 ++ export PATH
00:56:38 ++ '[' -n '' ']'
00:56:38 ++ '[' -z '' ']'
00:56:38 ++ _OLD_VIRTUAL_PS1=
00:56:38 ++ PS1='(omero-virtualenv) '
00:56:38 ++ export PS1
00:56:38 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:56:38 ++ export VIRTUAL_ENV_PROMPT
00:56:38 ++ hash -r
00:56:38 + source docs/hudson/OMERO.sh
00:56:38 ++ set -e
00:56:38 ++ set -u
00:56:38 ++ set -x
00:56:38 ++ source docs/hudson/functions.sh
00:56:38 ++ echo Building merge_ci
00:56:38 Building merge_ci
00:56:38 ++ python3 ./build.py build-dev release-all
00:56:38 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:56:40 
00:56:40 check-ivy:
00:56:40 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:56:40 Created dir: /home/omero/workspace/OMERO-build/src/target
00:56:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:56:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:56:42 
00:56:42 build-scons:
00:56:42 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:56:43 No sub-builds to iterate on
00:56:44 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:56:44 
00:56:44 buildlist:
00:56:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:56:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:56:44 
00:56:44 clean:
00:56:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:56:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:56:45 
00:56:45 python-clean:
00:56:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:56:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-3ebb95c6db-ice36-b64') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:56:45   warnings.warn(
00:56:46 running clean
00:56:46 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:56:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:56:47 
00:56:47 python-clean:
00:56:47 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:56:47 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-3ebb95c6db-ice36-b64') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:56:47   warnings.warn(
00:56:47 running clean
00:56:47 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:56:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:56:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:56:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:56:48 
00:56:48 python-clean:
00:56:48 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:56:48 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-3ebb95c6db-ice36-b64') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:56:48   warnings.warn(
00:56:48 running clean
00:56:48 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:56:48 Deleting directory /home/omero/workspace/OMERO-build/src/target
00:56:49 
00:56:49 build-scons:
00:56:49 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:56:51 
00:56:51 build:
00:56:51 No sub-builds to iterate on
00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:56:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:56:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:56:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:56:53 
00:56:53 tools-init:
00:56:53 no-op
00:56:53 
00:56:53 retrieve:
00:56:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:56:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:59:05 
00:59:05 prepare:
00:59:05 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:59:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:59:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:59:06 
00:59:06 pre-compile:
00:59:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:59:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:59:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:59:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:59:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:59:22 
00:59:22 compile:
00:59:22 no-op
00:59:22 
00:59:22 package:
00:59:22 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:59:25 
00:59:25 install:
00:59:25 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-3ebb95c6db-ice36-b64 :: integration :: Sat Aug 29 00:56:52 UTC 2026
00:59:25 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:59:25 :: publishing :: omero#omero_client
00:59:25 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-3ebb95c6db-ice36-b64/omero_client-5.6.3-677-3ebb95c6db-ice36-b64.jar
00:59:25 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-3ebb95c6db-ice36-b64/omero_client-5.6.3-677-3ebb95c6db-ice36-b64.xml
00:59:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:59:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:59:26 
00:59:26 retrieve:
00:59:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:59:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:59:27 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:59:27 
00:59:27 dist:
00:59:27 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:59:27 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:59:27 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:59:27 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:59:28 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:59:28 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:59:28 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:59:29 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:59:29 
00:59:29 copy-licenses:
00:59:29 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:59:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:59:29 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:59:30 
00:59:30 copy-history:
00:59:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:59:30 
00:59:30 copy-etc:
00:59:30 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:59:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:59:31 
00:59:31 copy-sql:
00:59:31 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:00:06 
01:00:06 copy-server:
01:00:06 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:00:06 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
01:00:13 
01:00:13 copy-client:
01:00:13 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:00:19 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:00:19 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
01:00:25 
01:00:25 update-version:
01:00:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:00:25 
01:00:25 create-workdirs:
01:00:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:00:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:00:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:00:25 
01:00:25 copy-luts:
01:00:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:00:25 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:00:26 
01:00:26 test-compile:
01:00:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:00:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:00:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:00:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:00:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:00:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:00:28 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:00:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:00:29 
01:00:29 testng-init:
01:00:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:00:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:00:37 01:00:37,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:00:37 01:00:37,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - No custom configurators were discovered as a service.
01:00:37 01:00:37,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:00:37 01:00:37,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:00:37 01:00:37,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:00:37 01:00:37,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:00:37 01:00:37,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:00:37 01:00:37,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:00:37 01:00:37,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:00:37 01:00:37,217 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:00:37 01:00:37,218 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:00:37 01:00:37,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs multiple times on the classpath.
01:00:37 01:00:37,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:00:37 01:00:37,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:00:37 01:00:37,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:00:37 01:00:37,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:00:37 01:00:37,464 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:00:37 01:00:37,466 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:00:37 01:00:37,466 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Please move "immediateFlush" property into the enclosing appender.
01:00:37 01:00:37,530 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Setting the "immediateFlush" property of the enclosing appender to true
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:00:37 01:00:37,531 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:00:37 01:00:37,533 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f069693 - End of configuration.
01:00:37 01:00:37,535 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30384990 - Registering current configuration as safe fallback point
01:00:37 01:00:37,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:00:37 
01:00:37 lifecycle.test-compile:
01:00:37 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:00:37 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:00:38 warning: [options] bootstrap class path not set in conjunction with -source 8
01:00:38 warning: [options] source value 8 is obsolete and will be removed in a future release
01:00:38 warning: [options] target value 8 is obsolete and will be removed in a future release
01:00:38 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:00:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:40 import omero.grid.RawAccessRequest;
01:00:40                  ^
01:00:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:41 import omero.grid.RawAccessRequest;
01:00:41                  ^
01:00:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:41 import omero.grid.RawAccessRequest;
01:00:41                  ^
01:00:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:41 import omero.model.ImportJob;
01:00:41                   ^
01:00:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:00:41 import omero.model.ImportJobI;
01:00:41                   ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
01:00:42         IObject link = (IObject) linkClass.newInstance();
01:00:42                                           ^
01:00:42   where T is a type-variable:
01:00:42     T extends Object declared in class Class
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:00:42         T copy = (T) obj.getClass().newInstance();
01:00:42                                    ^
01:00:42   where T is a type-variable:
01:00:42     T extends Object declared in class Class
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:42         RawAccessRequest raw = new RawAccessRequest();
01:00:42         ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:42         RawAccessRequest raw = new RawAccessRequest();
01:00:42                                    ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:00:42         raw.repoUuid = legacy.root().getHash().getValue();
01:00:42            ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:00:42         raw.command = "rm";
01:00:42            ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:00:42         raw.args = Arrays.asList(path);
01:00:42            ^
01:00:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:00:42         final IObject link = linkClass.newInstance();
01:00:42                                       ^
01:00:42   where T is a type-variable:
01:00:42     T extends Object declared in class Class
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:00:43             originalLink.setChild(annotationClass.newInstance());
01:00:43                                                  ^
01:00:43   where T is a type-variable:
01:00:43     T extends Object declared in class Class
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:00:43         RoiResult r = svc.findByImage(id, new RoiOptions());
01:00:43                          ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:43         final RawAccessRequest request = new RawAccessRequest();
01:00:43               ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:43         final RawAccessRequest request = new RawAccessRequest();
01:00:43                                              ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:00:43         request.repoUuid = repo.root().getHash().getValue();
01:00:43                ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:00:43         request.command = "exists";
01:00:43                ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:00:43         request.args = Collections.singletonList(dirPath);
01:00:43                ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:43         final RawAccessRequest request = new RawAccessRequest();
01:00:43               ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:00:43         final RawAccessRequest request = new RawAccessRequest();
01:00:43                                              ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:00:43         request.repoUuid = repo.root().getHash().getValue();
01:00:43                ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:00:43         request.command = "exists";
01:00:43                ^
01:00:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:00:43         request.args = Collections.singletonList(dirName);
01:00:43                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
01:00:44                                      ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:44         final ImportJob importJob = new ImportJobI();
01:00:44               ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:00:44         final ImportJob importJob = new ImportJobI();
01:00:44                                         ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:00:44         importJob.setImageName(omero.rtypes.rstring(name));
01:00:44                  ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:00:44         importJob.setImageDescription(omero.rtypes.rstring(desc));
01:00:44                  ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:44         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:00:44         ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:44         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:00:44                           ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:00:44         final String savedName = sent.getImageName().getValue().toString();
01:00:44                                      ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:00:44         final String savedDesc = sent.getImageDescription().getValue().toString();
01:00:44                                      ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:44         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:00:44               ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:00:44         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:00:44                                               ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:00:44         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:00:44         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         RoiResult r = svc.findByImage(image.getId().getValue(),
01:00:44                          ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:00:44                                 ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:00:44                                 ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:00:44         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:00:44                                          ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:00:44                                 ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:00:44         table = svc.getTable(f.getId().getValue());
01:00:44                    ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         RoiResult r = svc.findByImage(image.getId().getValue(),
01:00:44                          ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:00:44         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:00:44         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:00:44         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:00:44                ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:00:44                   ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:00:44                                   ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:00:44                                    ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:00:44                                                    ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:00:44             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:00:44                                       ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:00:44                                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:00:44                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:00:44                                                         ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:00:44                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:00:44                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:00:44                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:00:44                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:00:44         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:00:44                                                        ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:00:44                 svc.getShapeStatsRestricted(
01:00:44                    ^
01:00:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:00:44         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:00:44                                        ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:00:45         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:00:45                                      ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:00:45         request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:00:45         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:00:45         request.typesToIgnore = Collections.singletonList("Annotation");
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:00:45                     request.typesToIgnore = Collections.singletonList("Annotation");
01:00:45                            ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:00:45         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:00:45                                      ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:00:45         p2.setRelatedTo(p1);
01:00:45           ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:00:45         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:00:45                                           ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:00:45         pixels1.setRelatedTo(pixels2);
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:00:45         Pixels pixels = pixels1.getRelatedTo();
01:00:45                                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:00:45         Assert.assertNull(pixels1.getRelatedTo());
01:00:45                                  ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:00:45         pixels1.setRelatedTo(pixels2);
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:00:45         Pixels pixels = pixels1.getRelatedTo();
01:00:45                                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:00:45         Assert.assertNull(pixels1.getRelatedTo());
01:00:45                                  ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:45         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:00:45                                 ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:45         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:00:45                ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:45         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:00:45                                 ^
01:00:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:00:45         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:00:45                ^
01:00:45 Note: Some input files use unchecked or unsafe operations.
01:00:45 Note: Recompile with -Xlint:unchecked for details.
01:00:45 92 warnings
01:00:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_371042740.tmp
01:00:45 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:00:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:00:46 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-3ebb95c6db-ice36-b64 :: integration :: Sat Aug 29 01:00:28 UTC 2026
01:00:46 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:00:46 :: publishing :: omero#OmeroJava-test
01:00:46 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-3ebb95c6db-ice36-b64.jar
01:00:46 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-3ebb95c6db-ice36-b64.xml
01:00:46 
01:00:46 build-eclipse:
01:00:46 No sub-builds to iterate on
01:00:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:00:47 
01:00:47 retrieve:
01:00:47 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:00:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:00:51 
01:00:51 prepare:
01:00:51 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:00:55 
01:00:55 release-clients:
01:00:55 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-3ebb95c6db-ice36-b64.zip
01:01:02 
01:01:02 release-zip:
01:01:02 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-3ebb95c6db-ice36-b64.zip
01:01:16 
01:01:16 BUILD SUCCESSFUL
01:01:16 Total time: 4 minutes 37 seconds
01:01:16 ++ '[' -d .git ']'
01:01:16 ++ python3 ./build.py release-src
01:01:16 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:01:17 
01:01:17 release-src-git:
01:01:17 Releasing openmicroscopy-5.6.3-677-3ebb95c6db-ice36-b64
01:01:19   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-3ebb95c6db-ice36-b64.zip
01:01:19   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-3ebb95c6db-ice36-b64-base.zip
01:01:20 
01:01:20 BUILD SUCCESSFUL
01:01:20 Total time: 4 seconds
01:01:20 ++ echo BUILD_NUMBER=64
01:01:20 ++ echo OMERO_BRANCH=merge_ci
01:01:20 ++ git_info
01:01:20 +++ git rev-parse HEAD
01:01:20 ++ HEAD=3ebb95c6db49739795fcbb4abc55a0818348c6bb
01:01:20 ++ git log --max-count=1 3ebb95c6db49739795fcbb4abc55a0818348c6bb
01:01:21 ++ env
01:01:21 ++ sort
01:01:21 Archiving artifacts
01:01:39 Finished: SUCCESS