07:11:24Started by upstream project "Trigger" build number 7407:11:24originally caused by:
07:11:24 Started by user devspace07:11:24Running as SYSTEM
07:11:24Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
07:11:24The recommended git tool is: NONE
07:11:24No credentials specified
07:11:24 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
07:11:24Fetching changes from the remote Git repository
07:11:24 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
07:11:24Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git07:11:24 > git --version # timeout=10
07:11:24 > git --version # 'git version 2.39.3'
07:11:24 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:11:27 > git rev-parse origin/merge_ci^{commit} # timeout=10
07:11:27Checking out Revision 7329b8bfb3714568d39e991ee292c344667d59c0 (origin/merge_ci)
07:11:27 > git config core.sparsecheckout # timeout=10
07:11:27 > git checkout -f 7329b8bfb3714568d39e991ee292c344667d59c0 # timeout=10
07:11:27Commit message: "Add version.properties to etc/omero.properties"
07:11:27 > git rev-list --no-walk 436015b77305b2161a0dff36bf695a4ce98321df # timeout=10
07:11:27Cleaning workspace
07:11:27 > git rev-parse --verify HEAD # timeout=10
07:11:27Resetting working tree
07:11:27 > git reset --hard # timeout=10
07:11:27 > git clean -fdx # timeout=10
07:11:28Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6407:11:28[OMERO-build] $ /bin/bash -xe /tmp/jenkins7014401870328499346.sh
07:11:28+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
07:11:28+ cd src
07:11:28+ export OMERO_BRANCH=merge_ci
07:11:28+ OMERO_BRANCH=merge_ci
07:11:28+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
07:11:28+ source /home/omero/settings.env
07:11:28++ OMERO_DB_HOST=pg
07:11:28++ OMERO_DB_USER=postgres
07:11:28++ OMERO_DB_PASS=
07:11:28++ OMERO_ROOT_PASS=omero
07:11:28++ OMERO_DATA_DIR=/OMERO
07:11:28++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:11:28+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
07:11:30+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl07:11:31Collecting zeroc-ice==3.6.5
07:11:32 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
07:11:34WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
07:11:34You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
07:11:34+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
07:11:35Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
07:11:36Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
07:11:36Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
07:11:36Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
07:11:36Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
07:11:36Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
07:11:36Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
07:11:36Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
07:11:36Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
07:11:36Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
07:11:36Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
07:11:36Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
07:11:36Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
07:11:36Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
07:11:36WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
07:11:36You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
07:11:36+ source docs/hudson/OMERO.sh
07:11:36++ set -e
07:11:36++ set -u
07:11:36++ set -x
07:11:36++ source docs/hudson/functions.sh
07:11:36++ echo Building merge_ci
07:11:36Building merge_ci
07:11:36++ python3 ./build.py build-dev release-all
07:11:36OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:11:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:11:3707:11:37check-ivy:
07:11:37Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
07:11:37Created dir: /home/omero/workspace/OMERO-build/src/target
07:11:38:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:11:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:11:3907:11:39build-scons:
07:11:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:11:39No sub-builds to iterate on
07:11:40Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:11:4007:11:40buildlist:
07:11:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:11:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:11:4007:11:40clean:
07:11:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:11:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:11:4107:11:41python-clean:
07:11:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:11:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:11:41 warnings.warn(
07:11:41running clean
07:11:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
07:11:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:11:4107:11:41python-clean:
07:11:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:11:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:11:41 warnings.warn(
07:11:41running clean
07:11:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
07:11:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:11:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:11:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:11:4107:11:41python-clean:
07:11:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:11:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:11:41 warnings.warn(
07:11:41running clean
07:11:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
07:11:41Deleting directory /home/omero/workspace/OMERO-build/src/target
07:11:4207:11:42build-scons:
07:11:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:11:4207:11:42build:
07:11:42No sub-builds to iterate on
07:11:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:11:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:11:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:11:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:11:4207:11:42tools-init:
07:11:42no-op
07:11:4207:11:42retrieve:
07:11:42:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:11:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:12:4007:12:40prepare:
07:12:40Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:12:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:12:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:12:4007:12:40pre-compile:
07:12:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:12:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:12:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:12:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:12:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:12:4007:12:40compile:
07:12:40no-op
07:12:4007:12:40package:
07:12:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
07:12:4107:12:41install:
07:12:41:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-7329b8bfb3-ice36 :: integration :: Fri May 17 07:11:42 UTC 2024
07:12:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
07:12:41:: publishing :: omero#omero_client
07:12:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-7329b8bfb3-ice36/omero_client-5.6.3-467-7329b8bfb3-ice36.jar
07:12:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-7329b8bfb3-ice36/omero_client-5.6.3-467-7329b8bfb3-ice36.xml
07:12:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:12:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:12:4107:12:41retrieve:
07:12:41:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:12:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:12:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:12:4207:12:42dist:
07:12:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
07:12:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
07:12:42Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:12:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:12:42Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
07:12:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
07:12:42Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
07:12:42Entering /home/omero/workspace/OMERO-build/src/components/tests...
07:12:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:12:4207:12:42copy-licenses:
07:12:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:12:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
07:12:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
07:12:4307:12:43copy-history:
07:12:43Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:12:4307:12:43copy-etc:
07:12:43Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
07:12:43Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
07:12:4307:12:43copy-sql:
07:12:43Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
07:13:0307:13:03copy-server:
07:13:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
07:13:0307:13:03copy-client:
07:13:03Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
07:13:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
07:13:0507:13:05update-version:
07:13:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
07:13:0507:13:05create-workdirs:
07:13:05Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
07:13:05Created dir: /home/omero/workspace/OMERO-build/src/dist/var
07:13:0507:13:05copy-luts:
07:13:05Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:13:05Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:13:0507:13:05test-compile:
07:13:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:13:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:13:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:13:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:13:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:13:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:13:06Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:13:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:13:0607:13:06testng-init:
07:13:06:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:13:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:13:1007:13:09,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
07:13:1007:13:09,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
07:13:1007:13:09,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:13:1007:13:09,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:13:1007:13:09,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:13:1007:13:09,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:13:1007:13:09,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:13:1007:13:09,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:13:1007:13:09,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:13:1007:13:09,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:13:1007:13:09,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:13:1007:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
07:13:1007:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:13:1007:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:13:1007:13:10,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:13:1007:13:10,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:13:1007:13:10,094 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:13:1007:13:10,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:13:1007:13:10,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
07:13:1007:13:10,166 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
07:13:1007:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:13:1007:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:13:1007:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:13:1007:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:13:1007:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:13:1007:13:10,167 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:13:1007:13:10,168 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
07:13:1007:13:10,170 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
07:13:1007:13:10,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 325 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:13:1007:13:10lifecycle.test-compile:
07:13:10Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:13:10Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:13:10warning: [options] bootstrap class path not set in conjunction with -source 8
07:13:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:13import omero.grid.RawAccessRequest;
07:13:13 ^
07:13:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:13import omero.grid.RawAccessRequest;
07:13:13 ^
07:13:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:13import omero.grid.RawAccessRequest;
07:13:13 ^
07:13:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:13import omero.model.ImportJob;
07:13:13 ^
07:13:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:13:13import omero.model.ImportJobI;
07:13:13 ^
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
07:13:14 IObject link = (IObject) linkClass.newInstance();
07:13:14 ^
07:13:14 where T is a type-variable:
07:13:14 T extends Object declared in class Class
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
07:13:14 T copy = (T) obj.getClass().newInstance();
07:13:14 ^
07:13:14 where T is a type-variable:
07:13:14 T extends Object declared in class Class
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:14 RawAccessRequest raw = new RawAccessRequest();
07:13:14 ^
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:14 RawAccessRequest raw = new RawAccessRequest();
07:13:14 ^
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:13:14 raw.repoUuid = legacy.root().getHash().getValue();
07:13:14 ^
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
07:13:14 raw.command = "rm";
07:13:14 ^
07:13:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
07:13:14 raw.args = Arrays.asList(path);
07:13:14 ^
07:13:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
07:13:15 final IObject link = linkClass.newInstance();
07:13:15 ^
07:13:15 where T is a type-variable:
07:13:15 T extends Object declared in class Class
07:13:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
07:13:15 originalLink.setChild(annotationClass.newInstance());
07:13:15 ^
07:13:15 where T is a type-variable:
07:13:15 T extends Object declared in class Class
07:13:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:13:15 RoiResult r = svc.findByImage(id, new RoiOptions());
07:13:15 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:16 final RawAccessRequest request = new RawAccessRequest();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:16 final RawAccessRequest request = new RawAccessRequest();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:13:16 request.repoUuid = repo.root().getHash().getValue();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
07:13:16 request.command = "exists";
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
07:13:16 request.args = Collections.singletonList(dirPath);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:16 final RawAccessRequest request = new RawAccessRequest();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:13:16 final RawAccessRequest request = new RawAccessRequest();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:13:16 request.repoUuid = repo.root().getHash().getValue();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
07:13:16 request.command = "exists";
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
07:13:16 request.args = Collections.singletonList(dirName);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:16 final ImportJob importJob = new ImportJobI();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:13:16 final ImportJob importJob = new ImportJobI();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
07:13:16 importJob.setImageName(omero.rtypes.rstring(name));
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
07:13:16 importJob.setImageDescription(omero.rtypes.rstring(desc));
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:16 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:16 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:13:16 final String savedName = sent.getImageName().getValue().toString();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:13:16 final String savedDesc = sent.getImageDescription().getValue().toString();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:16 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:13:16 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:13:16 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:13:16 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
07:13:16 ^
07:13:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:13:16 RoiResult r = svc.findByImage(image.getId().getValue(),
07:13:16 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
07:13:17 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
07:13:17 table = svc.getTable(f.getId().getValue());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 RoiResult r = svc.findByImage(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:13:17 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:13:17 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:13:17 svc.getShapeStatsRestricted(
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:13:17 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:13:17 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:13:17 request.typesToIgnore = Collections.singletonList("TagAnnotation");
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:13:17 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:13:17 request.typesToIgnore = Collections.singletonList("Annotation");
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:13:17 request.typesToIgnore = Collections.singletonList("Annotation");
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:13:17 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:13:17 p2.setRelatedTo(p1);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:13:17 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:13:17 pixels1.setRelatedTo(pixels2);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:13:17 Pixels pixels = pixels1.getRelatedTo();
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:13:17 Assert.assertNull(pixels1.getRelatedTo());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:13:17 pixels1.setRelatedTo(pixels2);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:13:17 Pixels pixels = pixels1.getRelatedTo();
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:13:17 Assert.assertNull(pixels1.getRelatedTo());
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:13:17 ^
07:13:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:13:17 ^
07:13:17Note: Some input files use unchecked or unsafe operations.
07:13:17Note: Recompile with -Xlint:unchecked for details.
07:13:1788 warnings
07:13:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1594579200.tmp
07:13:17Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
07:13:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:13:18:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-7329b8bfb3-ice36 :: integration :: Fri May 17 07:13:06 UTC 2024
07:13:18 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:13:18:: publishing :: omero#OmeroJava-test
07:13:18 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-7329b8bfb3-ice36.jar
07:13:18 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-7329b8bfb3-ice36.xml
07:13:1807:13:18build-eclipse:
07:13:18No sub-builds to iterate on
07:13:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:13:1807:13:18retrieve:
07:13:18:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
07:13:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:13:2107:13:21prepare:
07:13:21Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
07:13:2307:13:23release-clients:
07:13:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-7329b8bfb3-ice36.zip
07:13:2907:13:29release-zip:
07:13:29Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-7329b8bfb3-ice36.zip
07:13:4207:13:42BUILD SUCCESSFUL
07:13:42Total time: 2 minutes 5 seconds
07:13:42++ '[' -d .git ']'
07:13:42++ python3 ./build.py release-src
07:13:42OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:13:42Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:13:4307:13:43release-src-git:
07:13:43Releasing openmicroscopy-5.6.3-467-7329b8bfb3-ice36
07:13:45 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-7329b8bfb3-ice36.zip
07:13:45 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-7329b8bfb3-ice36-base.zip
07:13:4707:13:47BUILD SUCCESSFUL
07:13:47Total time: 4 seconds
07:13:47++ echo BUILD_NUMBER=65
07:13:47++ echo OMERO_BRANCH=merge_ci
07:13:47++ git_info
07:13:47+++ git rev-parse HEAD
07:13:47++ HEAD=7329b8bfb3714568d39e991ee292c344667d59c0
07:13:47++ git log --max-count=1 7329b8bfb3714568d39e991ee292c344667d59c0
07:13:47++ env
07:13:47++ sort
07:13:47Archiving artifacts
07:14:15Finished: SUCCESS
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