15:43:23Started by upstream project "Trigger" build number 7815:43:23originally caused by:
15:43:23 Started by user devspace15:43:23Running as SYSTEM
15:43:23Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
15:43:23The recommended git tool is: NONE
15:43:23No credentials specified
15:43:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
15:43:23Fetching changes from the remote Git repository
15:43:23 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
15:43:23Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git15:43:23 > git --version # timeout=10
15:43:23 > git --version # 'git version 2.52.0'
15:43:23 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
15:43:28 > git rev-parse origin/merge_ci^{commit} # timeout=10
15:43:28Checking out Revision 12c0b08fc96fd9f2145b9c1842ee740826f648b2 (origin/merge_ci)
15:43:28 > git config core.sparsecheckout # timeout=10
15:43:28 > git checkout -f 12c0b08fc96fd9f2145b9c1842ee740826f648b2 # timeout=10
15:43:31Commit message: "Add version.properties to etc/omero.properties"
15:43:31 > git rev-list --no-walk 767a2bdbcc2940e498b05924837071b375974f53 # timeout=10
15:43:32Cleaning workspace
15:43:32 > git rev-parse --verify HEAD # timeout=10
15:43:32Resetting working tree
15:43:32 > git reset --hard # timeout=10
15:43:32 > git clean -fdx # timeout=10
15:44:35Copied 6 artifacts from "OMERO-python-superbuild-build" build number 5715:44:35[OMERO-build] $ /bin/bash -xe /tmp/jenkins15810534721248343914.sh
15:44:35+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
15:44:35+ cd src
15:44:35+ export OMERO_BRANCH=merge_ci
15:44:35+ OMERO_BRANCH=merge_ci
15:44:35+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
15:44:35+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
15:45:21+ source /home/omero/settings.env
15:45:21++ OMERO_DB_HOST=pg
15:45:21++ OMERO_DB_USER=postgres
15:45:21++ OMERO_DB_PASS=
15:45:21++ OMERO_ROOT_PASS=omero
15:45:21++ OMERO_DATA_DIR=/OMERO
15:45:21++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:45:21+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
15:45:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl15:45:42Collecting zeroc-ice==3.6.5
15:45:42 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
15:45:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00
15:45:45Installing collected packages: zeroc-ice
15:45:49Successfully installed zeroc-ice-3.6.5
15:45:4915:45:49[notice] A new release of pip available: 22.3.1 -> 26.2.1
15:45:49[notice] To update, run: python3.11 -m pip install --upgrade pip
15:45:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
15:45:50Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
15:45:50Collecting setuptools<66
15:45:50 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
15:45:50Collecting omero-py
15:45:51 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
15:45:51Collecting appdirs
15:45:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:45:51Collecting future
15:45:51 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:45:52Collecting numpy<3,>=2
15:45:52 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
15:45:52Collecting Pillow>=10.0.0
15:45:52 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
15:45:53Collecting PyYAML
15:45:53 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:45:53Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
15:45:53Collecting requests
15:45:53 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
15:45:53Collecting portalocker
15:45:53 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
15:45:53Collecting charset_normalizer<4,>=2
15:45:54 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
15:45:54Collecting idna<4,>=2.5
15:45:54 Using cached idna-3.19-py3-none-any.whl (68 kB)
15:45:54Collecting urllib3<3,>=1.26
15:45:54 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
15:45:54Collecting certifi>=2023.5.7
15:45:54 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
15:45:54Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
15:45:55 Attempting uninstall: setuptools
15:45:55 Found existing installation: setuptools 65.5.1
15:45:56 Uninstalling setuptools-65.5.1:
15:45:56 Successfully uninstalled setuptools-65.5.1
15:46:45Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
15:46:4515:46:45[notice] A new release of pip available: 22.3.1 -> 26.2.1
15:46:45[notice] To update, run: python3.11 -m pip install --upgrade pip
15:46:46+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
15:46:46++ deactivate nondestructive
15:46:46++ '[' -n '' ']'
15:46:46++ '[' -n '' ']'
15:46:46++ hash -r
15:46:46++ '[' -n '' ']'
15:46:46++ unset VIRTUAL_ENV
15:46:46++ unset VIRTUAL_ENV_PROMPT
15:46:46++ '[' '!' nondestructive = nondestructive ']'
15:46:46++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
15:46:46++ export VIRTUAL_ENV
15:46:46++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:46:46++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:46:46++ export PATH
15:46:46++ '[' -n '' ']'
15:46:46++ '[' -z '' ']'
15:46:46++ _OLD_VIRTUAL_PS1=
15:46:46++ PS1='(omero-virtualenv) '
15:46:46++ export PS1
15:46:46++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
15:46:46++ export VIRTUAL_ENV_PROMPT
15:46:46++ hash -r
15:46:46+ source docs/hudson/OMERO.sh
15:46:46++ set -e
15:46:46++ set -u
15:46:46++ set -x
15:46:46++ source docs/hudson/functions.sh
15:46:46++ echo Building merge_ci
15:46:46Building merge_ci
15:46:46++ python3 ./build.py build-dev release-all
15:46:46Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:46:4715:46:47check-ivy:
15:46:47Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
15:46:47Created dir: /home/omero/workspace/OMERO-build/src/target
15:46:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:46:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:46:4915:46:49build-scons:
15:46:49Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:46:50No sub-builds to iterate on
15:46:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:46:5115:46:51buildlist:
15:46:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:46:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:46:5115:46:51clean:
15:46:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:5315:46:53python-clean:
15:46:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:46:53/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-12c0b08fc9-ice36-b66') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:46:53 warnings.warn(
15:46:53running clean
15:46:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
15:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:46:5415:46:54python-clean:
15:46:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:46:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-12c0b08fc9-ice36-b66') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:46:54 warnings.warn(
15:46:54running clean
15:46:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
15:46:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:46:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:46:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:46:5515:46:55python-clean:
15:46:55WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:46:55/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-12c0b08fc9-ice36-b66') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:46:55 warnings.warn(
15:46:55running clean
15:46:55Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
15:46:55Deleting directory /home/omero/workspace/OMERO-build/src/target
15:46:5615:46:56build-scons:
15:46:56Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:46:5815:46:58build:
15:46:58No sub-builds to iterate on
15:46:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:46:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:47:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:47:0015:47:00tools-init:
15:47:00no-op
15:47:0015:47:00retrieve:
15:47:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:47:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:49:2215:49:22prepare:
15:49:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:49:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:49:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:49:2215:49:22pre-compile:
15:49:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:49:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:49:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:49:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:49:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:49:3815:49:38compile:
15:49:38no-op
15:49:3815:49:38package:
15:49:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
15:49:4115:49:41install:
15:49:41:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-12c0b08fc9-ice36-b66 :: integration :: Sun Aug 30 15:46:59 UTC 2026
15:49:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
15:49:41:: publishing :: omero#omero_client
15:49:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-12c0b08fc9-ice36-b66/omero_client-5.6.3-677-12c0b08fc9-ice36-b66.jar
15:49:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-12c0b08fc9-ice36-b66/omero_client-5.6.3-677-12c0b08fc9-ice36-b66.xml
15:49:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:49:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:49:4215:49:42retrieve:
15:49:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:49:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:49:43Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:49:4315:49:43dist:
15:49:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
15:49:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
15:49:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:49:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:49:44Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
15:49:44Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
15:49:44Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
15:49:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
15:49:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:49:4615:49:46copy-licenses:
15:49:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:49:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
15:49:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
15:49:4715:49:47copy-history:
15:49:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:49:4715:49:47copy-etc:
15:49:47Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
15:49:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
15:49:4815:49:48copy-sql:
15:49:48Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
15:50:2615:50:26copy-server:
15:50:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
15:50:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
15:50:3415:50:34copy-client:
15:50:34Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
15:50:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
15:50:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
15:50:4615:50:46update-version:
15:50:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
15:50:4615:50:46create-workdirs:
15:50:46Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
15:50:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var
15:50:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
15:50:4615:50:46copy-luts:
15:50:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:50:46Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:50:4615:50:46test-compile:
15:50:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:50:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:50:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:50:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:50:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:50:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:50:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:50:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:50:4915:50:49testng-init:
15:50:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:50:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:50:5815:50:57,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
15:50:5815:50:57,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - No custom configurators were discovered as a service.
15:50:5815:50:57,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:50:5815:50:57,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:50:5815:50:57,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:50:5815:50:57,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:50:5815:50:57,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:50:5815:50:57,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:50:5815:50:57,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:50:5815:50:57,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:50:5815:50:57,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:50:5815:50:57,920 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f069693 - Resource [logback.xml] occurs multiple times on the classpath.
15:50:5815:50:57,920 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f069693 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:50:5815:50:57,920 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f069693 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:50:5815:50:58,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:50:5815:50:58,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:50:5815:50:58,175 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:50:5815:50:58,177 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30384990 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:50:5815:50:58,177 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30384990 - Please move "immediateFlush" property into the enclosing appender.
15:50:5815:50:58,240 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30384990 - Setting the "immediateFlush" property of the enclosing appender to true
15:50:5815:50:58,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:50:5815:50:58,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:50:5815:50:58,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:50:5815:50:58,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:50:5815:50:58,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:50:5815:50:58,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:50:5815:50:58,243 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@320cfa73 - End of configuration.
15:50:5815:50:58,245 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2fcc009e - Registering current configuration as safe fallback point
15:50:5815:50:58,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3795591d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 331 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:50:5815:50:58lifecycle.test-compile:
15:50:58Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:50:58Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:50:58warning: [options] bootstrap class path not set in conjunction with -source 8
15:50:58warning: [options] source value 8 is obsolete and will be removed in a future release
15:50:58warning: [options] target value 8 is obsolete and will be removed in a future release
15:50:58warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
15:51:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:01import omero.grid.RawAccessRequest;
15:51:01 ^
15:51:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:02import omero.grid.RawAccessRequest;
15:51:02 ^
15:51:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:02import omero.grid.RawAccessRequest;
15:51:02 ^
15:51:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:02import omero.model.ImportJob;
15:51:02 ^
15:51:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:51:02import omero.model.ImportJobI;
15:51:02 ^
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
15:51:03 IObject link = (IObject) linkClass.newInstance();
15:51:03 ^
15:51:03 where T is a type-variable:
15:51:03 T extends Object declared in class Class
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
15:51:03 T copy = (T) obj.getClass().newInstance();
15:51:03 ^
15:51:03 where T is a type-variable:
15:51:03 T extends Object declared in class Class
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:03 RawAccessRequest raw = new RawAccessRequest();
15:51:03 ^
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:03 RawAccessRequest raw = new RawAccessRequest();
15:51:03 ^
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:51:03 raw.repoUuid = legacy.root().getHash().getValue();
15:51:03 ^
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
15:51:03 raw.command = "rm";
15:51:03 ^
15:51:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
15:51:03 raw.args = Arrays.asList(path);
15:51:03 ^
15:51:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
15:51:04 final IObject link = linkClass.newInstance();
15:51:04 ^
15:51:04 where T is a type-variable:
15:51:04 T extends Object declared in class Class
15:51:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
15:51:04 originalLink.setChild(annotationClass.newInstance());
15:51:04 ^
15:51:04 where T is a type-variable:
15:51:04 T extends Object declared in class Class
15:51:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:51:04 RoiResult r = svc.findByImage(id, new RoiOptions());
15:51:04 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:05 final RawAccessRequest request = new RawAccessRequest();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:05 final RawAccessRequest request = new RawAccessRequest();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:51:05 request.repoUuid = repo.root().getHash().getValue();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
15:51:05 request.command = "exists";
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
15:51:05 request.args = Collections.singletonList(dirPath);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:05 final RawAccessRequest request = new RawAccessRequest();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:51:05 final RawAccessRequest request = new RawAccessRequest();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:51:05 request.repoUuid = repo.root().getHash().getValue();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
15:51:05 request.command = "exists";
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
15:51:05 request.args = Collections.singletonList(dirName);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:05 final ImportJob importJob = new ImportJobI();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:51:05 final ImportJob importJob = new ImportJobI();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
15:51:05 importJob.setImageName(omero.rtypes.rstring(name));
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
15:51:05 importJob.setImageDescription(omero.rtypes.rstring(desc));
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:51:05 final String savedName = sent.getImageName().getValue().toString();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:51:05 final String savedDesc = sent.getImageDescription().getValue().toString();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:51:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:51:05 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:51:05 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 RoiResult r = svc.findByImage(image.getId().getValue(),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
15:51:05 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
15:51:05 table = svc.getTable(f.getId().getValue());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 RoiResult r = svc.findByImage(image.getId().getValue(),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:51:05 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:51:05 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:51:05 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
15:51:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:51:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:51:05 svc.getShapeStatsRestricted(
15:51:05 ^
15:51:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:51:05 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
15:51:05 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:51:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:51:06 request.typesToIgnore = Collections.singletonList("TagAnnotation");
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:51:06 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:51:06 request.typesToIgnore = Collections.singletonList("Annotation");
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:51:06 request.typesToIgnore = Collections.singletonList("Annotation");
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:51:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:51:06 p2.setRelatedTo(p1);
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:51:06 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:51:06 pixels1.setRelatedTo(pixels2);
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:51:06 Pixels pixels = pixels1.getRelatedTo();
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:51:06 Assert.assertNull(pixels1.getRelatedTo());
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:51:06 pixels1.setRelatedTo(pixels2);
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:51:06 Pixels pixels = pixels1.getRelatedTo();
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:51:06 Assert.assertNull(pixels1.getRelatedTo());
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:51:06 ^
15:51:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:51:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:51:06 ^
15:51:07Note: Some input files use unchecked or unsafe operations.
15:51:07Note: Recompile with -Xlint:unchecked for details.
15:51:0792 warnings
15:51:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_111693697.tmp
15:51:07Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
15:51:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:51:07:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-12c0b08fc9-ice36-b66 :: integration :: Sun Aug 30 15:50:48 UTC 2026
15:51:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:51:07:: publishing :: omero#OmeroJava-test
15:51:07 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-12c0b08fc9-ice36-b66.jar
15:51:07 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-12c0b08fc9-ice36-b66.xml
15:51:0715:51:07build-eclipse:
15:51:07No sub-builds to iterate on
15:51:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:51:0815:51:08retrieve:
15:51:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:51:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:51:1315:51:13prepare:
15:51:13Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:51:1615:51:16release-clients:
15:51:16Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-12c0b08fc9-ice36-b66.zip
15:51:2315:51:23release-zip:
15:51:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-12c0b08fc9-ice36-b66.zip
15:51:3615:51:36BUILD SUCCESSFUL
15:51:36Total time: 4 minutes 50 seconds
15:51:36++ '[' -d .git ']'
15:51:36++ python3 ./build.py release-src
15:51:36Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:51:3715:51:37release-src-git:
15:51:37Releasing openmicroscopy-5.6.3-677-12c0b08fc9-ice36-b66
15:51:39 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-12c0b08fc9-ice36-b66.zip
15:51:39 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-12c0b08fc9-ice36-b66-base.zip
15:51:4115:51:41BUILD SUCCESSFUL
15:51:41Total time: 4 seconds
15:51:41++ echo BUILD_NUMBER=66
15:51:41++ echo OMERO_BRANCH=merge_ci
15:51:41++ git_info
15:51:41+++ git rev-parse HEAD
15:51:41++ HEAD=12c0b08fc96fd9f2145b9c1842ee740826f648b2
15:51:41++ git log --max-count=1 12c0b08fc96fd9f2145b9c1842ee740826f648b2
15:51:41++ env
15:51:41++ sort
15:51:41Archiving artifacts
15:51:59Finished: SUCCESS
