01:23:32Started by upstream project "Trigger" build number 8101:23:32originally caused by:
01:23:32 Started by timer
01:23:32Running as SYSTEM
01:23:32Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:23:32The recommended git tool is: NONE
01:23:32No credentials specified
01:23:32 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:23:32Fetching changes from the remote Git repository
01:23:32 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:23:32Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:23:32 > git --version # timeout=10
01:23:32 > git --version # 'git version 2.52.0'
01:23:32 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:23:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:23:37Checking out Revision 53f0485af3ed216b638bbc05da8a0e1afad020d0 (origin/merge_ci)
01:23:37 > git config core.sparsecheckout # timeout=10
01:23:37 > git checkout -f 53f0485af3ed216b638bbc05da8a0e1afad020d0 # timeout=10
01:23:40Commit message: "Add version.properties to etc/omero.properties"
01:23:40 > git rev-list --no-walk 444e77120c4ba0baf3b8184a6e543abdc40639d6 # timeout=10
01:23:40Cleaning workspace
01:23:40 > git rev-parse --verify HEAD # timeout=10
01:23:40Resetting working tree
01:23:40 > git reset --hard # timeout=10
01:23:41 > git clean -fdx # timeout=10
01:24:34Copied 6 artifacts from "OMERO-python-superbuild-build" build number 5901:24:35[OMERO-build] $ /bin/bash -xe /tmp/jenkins2287697215680260636.sh
01:24:35+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:24:35+ cd src
01:24:35+ export OMERO_BRANCH=merge_ci
01:24:35+ OMERO_BRANCH=merge_ci
01:24:35+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:24:35+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:25:13+ source /home/omero/settings.env
01:25:13++ OMERO_DB_HOST=pg
01:25:13++ OMERO_DB_USER=postgres
01:25:13++ OMERO_DB_PASS=
01:25:13++ OMERO_ROOT_PASS=omero
01:25:13++ OMERO_DATA_DIR=/OMERO
01:25:13++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:25:13+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:25:33+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:25:34Collecting zeroc-ice==3.6.5
01:25:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:25:37 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.0 MB/s eta 0:00:00
01:25:37Installing collected packages: zeroc-ice
01:25:41Successfully installed zeroc-ice-3.6.5
01:25:4101:25:41[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:25:41[notice] To update, run: python3.11 -m pip install --upgrade pip
01:25:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:25:42Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:25:42Collecting setuptools<66
01:25:42 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:25:42Collecting omero-py
01:25:42 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:25:42Collecting appdirs
01:25:42 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:25:43Collecting future
01:25:43 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:25:43Collecting numpy<3,>=2
01:25:43 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:25:44Collecting Pillow>=10.0.0
01:25:44 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:25:44Collecting PyYAML
01:25:44 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:25:44Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:25:45Collecting requests
01:25:45 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:25:45Collecting portalocker
01:25:45 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
01:25:45Collecting charset_normalizer<4,>=2
01:25:45 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
01:25:45Collecting idna<4,>=2.5
01:25:45 Using cached idna-3.19-py3-none-any.whl (68 kB)
01:25:45Collecting urllib3<3,>=1.26
01:25:46 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:25:46Collecting certifi>=2023.5.7
01:25:46 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:25:46Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:25:47 Attempting uninstall: setuptools
01:25:47 Found existing installation: setuptools 65.5.1
01:25:48 Uninstalling setuptools-65.5.1:
01:25:48 Successfully uninstalled setuptools-65.5.1
01:26:38Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:26:3801:26:38[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:26:38[notice] To update, run: python3.11 -m pip install --upgrade pip
01:26:39+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:26:39++ deactivate nondestructive
01:26:39++ '[' -n '' ']'
01:26:39++ '[' -n '' ']'
01:26:39++ hash -r
01:26:39++ '[' -n '' ']'
01:26:39++ unset VIRTUAL_ENV
01:26:39++ unset VIRTUAL_ENV_PROMPT
01:26:39++ '[' '!' nondestructive = nondestructive ']'
01:26:39++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:26:39++ export VIRTUAL_ENV
01:26:39++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:26:39++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:26:39++ export PATH
01:26:39++ '[' -n '' ']'
01:26:39++ '[' -z '' ']'
01:26:39++ _OLD_VIRTUAL_PS1=
01:26:39++ PS1='(omero-virtualenv) '
01:26:39++ export PS1
01:26:39++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:26:39++ export VIRTUAL_ENV_PROMPT
01:26:39++ hash -r
01:26:39+ source docs/hudson/OMERO.sh
01:26:39++ set -e
01:26:39++ set -u
01:26:39++ set -x
01:26:39++ source docs/hudson/functions.sh
01:26:39++ echo Building merge_ci
01:26:39Building merge_ci
01:26:39++ python3 ./build.py build-dev release-all
01:26:39Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:26:4001:26:40check-ivy:
01:26:40Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:26:40Created dir: /home/omero/workspace/OMERO-build/src/target
01:26:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:4201:26:42build-scons:
01:26:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:26:44No sub-builds to iterate on
01:26:45Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:26:4501:26:45buildlist:
01:26:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:4501:26:45clean:
01:26:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:4601:26:46python-clean:
01:26:46WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:46/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-53f0485af3-ice36-b68') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:46 warnings.warn(
01:26:46running clean
01:26:46Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:26:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:26:4701:26:47python-clean:
01:26:47WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:47/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-53f0485af3-ice36-b68') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:47 warnings.warn(
01:26:48running clean
01:26:48Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:26:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:4901:26:49python-clean:
01:26:49WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:26:49/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-53f0485af3-ice36-b68') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:26:49 warnings.warn(
01:26:49running clean
01:26:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:26:49Deleting directory /home/omero/workspace/OMERO-build/src/target
01:26:5101:26:51build-scons:
01:26:51Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:26:5201:26:52build:
01:26:52No sub-builds to iterate on
01:26:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:26:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:26:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:26:5401:26:54tools-init:
01:26:54no-op
01:26:5401:26:54retrieve:
01:26:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:4901:27:49prepare:
01:27:49Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:27:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:27:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:27:4901:27:49pre-compile:
01:27:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:27:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:00Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:05Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:05Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:0801:28:08compile:
01:28:08no-op
01:28:0801:28:08package:
01:28:08Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:28:1201:28:12install:
01:28:12:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-53f0485af3-ice36-b68 :: integration :: Tue Sep 01 01:26:53 UTC 2026
01:28:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:28:12:: publishing :: omero#omero_client
01:28:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-53f0485af3-ice36-b68/omero_client-5.6.3-677-53f0485af3-ice36-b68.jar
01:28:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-53f0485af3-ice36-b68/omero_client-5.6.3-677-53f0485af3-ice36-b68.xml
01:28:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:1401:28:14retrieve:
01:28:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:28:1501:28:15dist:
01:28:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:28:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:28:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:28:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:28:15Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:28:16Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:28:16Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:28:17Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:28:17Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:28:1801:28:18copy-licenses:
01:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:28:18Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:28:18Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:28:1901:28:19copy-history:
01:28:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:28:1901:28:19copy-etc:
01:28:19Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:28:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:28:2001:28:20copy-sql:
01:28:20Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:28:4701:28:47copy-server:
01:28:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:28:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
01:28:5401:28:54copy-client:
01:28:54Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:29:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:29:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
01:29:0701:29:07update-version:
01:29:07Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:29:0701:29:07create-workdirs:
01:29:07Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:29:07Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:29:07Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:29:0701:29:07copy-luts:
01:29:07Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:07Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:0701:29:07test-compile:
01:29:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:10Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:29:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:1101:29:11testng-init:
01:29:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:2101:29:20,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:29:2101:29:20,701 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - No custom configurators were discovered as a service.
01:29:2101:29:20,701 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:2101:29:20,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:2101:29:20,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:29:2101:29:20,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:29:2101:29:20,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:29:2101:29:20,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:2101:29:20,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:2101:29:20,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:29:2101:29:20,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:2101:29:20,723 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3795591d - Resource [logback.xml] occurs multiple times on the classpath.
01:29:2101:29:20,723 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3795591d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:2101:29:20,723 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3795591d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:29:2101:29:20,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:29:2101:29:20,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:29:2101:29:20,972 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:29:2101:29:20,974 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f069693 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:29:2101:29:20,974 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f069693 - Please move "immediateFlush" property into the enclosing appender.
01:29:2101:29:21,046 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f069693 - Setting the "immediateFlush" property of the enclosing appender to true
01:29:2101:29:21,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:29:2101:29:21,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:29:2101:29:21,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:29:2101:29:21,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:29:2101:29:21,048 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:29:2101:29:21,048 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:29:2101:29:21,049 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@30384990 - End of configuration.
01:29:2101:29:21,051 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@320cfa73 - Registering current configuration as safe fallback point
01:29:2101:29:21,051 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b693be7 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:29:2101:29:21lifecycle.test-compile:
01:29:21Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:21Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:21warning: [options] bootstrap class path not set in conjunction with -source 8
01:29:21warning: [options] source value 8 is obsolete and will be removed in a future release
01:29:21warning: [options] target value 8 is obsolete and will be removed in a future release
01:29:21warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:29:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:24import omero.grid.RawAccessRequest;
01:29:24 ^
01:29:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:25import omero.grid.RawAccessRequest;
01:29:25 ^
01:29:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:25import omero.grid.RawAccessRequest;
01:29:25 ^
01:29:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:25import omero.model.ImportJob;
01:29:25 ^
01:29:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:29:25import omero.model.ImportJobI;
01:29:25 ^
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
01:29:26 IObject link = (IObject) linkClass.newInstance();
01:29:26 ^
01:29:26 where T is a type-variable:
01:29:26 T extends Object declared in class Class
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:29:26 T copy = (T) obj.getClass().newInstance();
01:29:26 ^
01:29:26 where T is a type-variable:
01:29:26 T extends Object declared in class Class
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:26 RawAccessRequest raw = new RawAccessRequest();
01:29:26 ^
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:26 RawAccessRequest raw = new RawAccessRequest();
01:29:26 ^
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:26 raw.repoUuid = legacy.root().getHash().getValue();
01:29:26 ^
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:26 raw.command = "rm";
01:29:26 ^
01:29:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:26 raw.args = Arrays.asList(path);
01:29:26 ^
01:29:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:29:27 final IObject link = linkClass.newInstance();
01:29:27 ^
01:29:27 where T is a type-variable:
01:29:27 T extends Object declared in class Class
01:29:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:29:27 originalLink.setChild(annotationClass.newInstance());
01:29:27 ^
01:29:27 where T is a type-variable:
01:29:27 T extends Object declared in class Class
01:29:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:27 RoiResult r = svc.findByImage(id, new RoiOptions());
01:29:27 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:28 final RawAccessRequest request = new RawAccessRequest();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:28 final RawAccessRequest request = new RawAccessRequest();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:28 request.repoUuid = repo.root().getHash().getValue();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:28 request.command = "exists";
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:28 request.args = Collections.singletonList(dirPath);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:28 final RawAccessRequest request = new RawAccessRequest();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:28 final RawAccessRequest request = new RawAccessRequest();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:28 request.repoUuid = repo.root().getHash().getValue();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:28 request.command = "exists";
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:28 request.args = Collections.singletonList(dirName);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:28 final ImportJob importJob = new ImportJobI();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:29:28 final ImportJob importJob = new ImportJobI();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:29:28 importJob.setImageName(omero.rtypes.rstring(name));
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:29:28 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:29:28 final String savedName = sent.getImageName().getValue().toString();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:29:28 final String savedDesc = sent.getImageDescription().getValue().toString();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:29:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:29:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 RoiResult r = svc.findByImage(image.getId().getValue(),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:29:28 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:29:28 table = svc.getTable(f.getId().getValue());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 RoiResult r = svc.findByImage(image.getId().getValue(),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:29:28 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:29:28 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:29:28 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:29:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:29:28 svc.getShapeStatsRestricted(
01:29:28 ^
01:29:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:29:28 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:29:28 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:29 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:29 request.typesToIgnore = Collections.singletonList("Annotation");
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:29 request.typesToIgnore = Collections.singletonList("Annotation");
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:29 p2.setRelatedTo(p1);
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:29 pixels1.setRelatedTo(pixels2);
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:29 Pixels pixels = pixels1.getRelatedTo();
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:29 Assert.assertNull(pixels1.getRelatedTo());
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:29 pixels1.setRelatedTo(pixels2);
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:29 Pixels pixels = pixels1.getRelatedTo();
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:29 Assert.assertNull(pixels1.getRelatedTo());
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:29 ^
01:29:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:29 ^
01:29:29Note: Some input files use unchecked or unsafe operations.
01:29:29Note: Recompile with -Xlint:unchecked for details.
01:29:2992 warnings
01:29:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_694053436.tmp
01:29:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:29:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:30:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-53f0485af3-ice36-b68 :: integration :: Tue Sep 01 01:29:10 UTC 2026
01:29:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:29:30:: publishing :: omero#OmeroJava-test
01:29:30 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-53f0485af3-ice36-b68.jar
01:29:30 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-53f0485af3-ice36-b68.xml
01:29:3001:29:30build-eclipse:
01:29:30No sub-builds to iterate on
01:29:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:3101:29:31retrieve:
01:29:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:3601:29:36prepare:
01:29:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:29:4101:29:41release-clients:
01:29:41Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-53f0485af3-ice36-b68.zip
01:29:4801:29:48release-zip:
01:29:48Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-53f0485af3-ice36-b68.zip
01:30:0101:30:01BUILD SUCCESSFUL
01:30:01Total time: 3 minutes 22 seconds
01:30:01++ '[' -d .git ']'
01:30:01++ python3 ./build.py release-src
01:30:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:30:0201:30:02release-src-git:
01:30:02Releasing openmicroscopy-5.6.3-677-53f0485af3-ice36-b68
01:30:04 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-53f0485af3-ice36-b68.zip
01:30:04 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-53f0485af3-ice36-b68-base.zip
01:30:0601:30:06BUILD SUCCESSFUL
01:30:06Total time: 4 seconds
01:30:06++ echo BUILD_NUMBER=68
01:30:06++ echo OMERO_BRANCH=merge_ci
01:30:06++ git_info
01:30:06+++ git rev-parse HEAD
01:30:06++ HEAD=53f0485af3ed216b638bbc05da8a0e1afad020d0
01:30:06++ git log --max-count=1 53f0485af3ed216b638bbc05da8a0e1afad020d0
01:30:06++ env
01:30:06++ sort
01:30:06Archiving artifacts
01:30:25Finished: SUCCESS
