00:35:22Started by upstream project "Trigger" build number 11400:35:22originally caused by:
00:35:22 Started by timer
00:35:22Running as SYSTEM
00:35:22Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:35:22The recommended git tool is: NONE
00:35:22No credentials specified
00:35:22 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:35:22Fetching changes from the remote Git repository
00:35:22 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:35:22Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:35:22 > git --version # timeout=10
00:35:22 > git --version # 'git version 2.47.3'
00:35:22 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:35:23 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:35:23Checking out Revision 309fbf2bcd61ceddc9f5db4ffa7eca97d584d3e1 (origin/merge_ci)
00:35:23 > git config core.sparsecheckout # timeout=10
00:35:23 > git checkout -f 309fbf2bcd61ceddc9f5db4ffa7eca97d584d3e1 # timeout=10
00:35:23Commit message: "Add version.properties to etc/omero.properties"
00:35:23 > git rev-list --no-walk 4a969f99ee9f64fe1822efae22d4da4b4b692382 # timeout=10
00:35:23Cleaning workspace
00:35:23 > git rev-parse --verify HEAD # timeout=10
00:35:23Resetting working tree
00:35:23 > git reset --hard # timeout=10
00:35:23 > git clean -fdx # timeout=10
00:35:23Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8500:35:23[OMERO-build] $ /bin/bash -xe /tmp/jenkins6143306997964533006.sh
00:35:23+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
00:35:23+ cd src
00:35:23+ export OMERO_BRANCH=merge_ci
00:35:23+ OMERO_BRANCH=merge_ci
00:35:23+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:23+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:23+ source /home/omero/settings.env
00:35:23++ OMERO_DB_HOST=pg
00:35:23++ OMERO_DB_USER=postgres
00:35:23++ OMERO_DB_PASS=
00:35:23++ OMERO_ROOT_PASS=omero
00:35:23++ OMERO_DATA_DIR=/OMERO
00:35:23++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:35:23+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:35:27Collecting zeroc-ice==3.6.5
00:35:27 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:35:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 5.0 MB/s eta 0:00:00
00:35:31Installing collected packages: zeroc-ice
00:35:32Successfully installed zeroc-ice-3.6.5
00:35:3200:35:32[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:35:32[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:35:33Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:35:33Collecting setuptools<66
00:35:33 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:35:33Collecting omero-py
00:35:33 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:35:33Collecting appdirs
00:35:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:33Collecting future
00:35:33 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:35:34Collecting numpy<3,>=2
00:35:34 Using cached numpy-2.4.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:35:34Collecting Pillow>=10.0.0
00:35:34 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:35:34Collecting PyYAML
00:35:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:34Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:35:35Collecting requests
00:35:35 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:35:35Collecting portalocker
00:35:35 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:35:35Collecting charset_normalizer<4,>=2
00:35:35 Using cached charset_normalizer-3.4.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (204 kB)
00:35:35Collecting idna<4,>=2.5
00:35:35 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:35:35Collecting urllib3<3,>=1.21.1
00:35:35 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:35:35Collecting certifi>=2017.4.17
00:35:35 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:35:35Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:35:35 Attempting uninstall: setuptools
00:35:35 Found existing installation: setuptools 65.5.1
00:35:35 Uninstalling setuptools-65.5.1:
00:35:35 Successfully uninstalled setuptools-65.5.1
00:35:41Successfully installed Pillow-12.1.1 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.6 future-1.0.0 idna-3.11 numpy-2.4.3 omero-py-5.22.0 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
00:35:4100:35:41[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:35:41[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:41+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:35:41++ deactivate nondestructive
00:35:41++ '[' -n '' ']'
00:35:41++ '[' -n '' ']'
00:35:41++ hash -r
00:35:41++ '[' -n '' ']'
00:35:41++ unset VIRTUAL_ENV
00:35:41++ unset VIRTUAL_ENV_PROMPT
00:35:41++ '[' '!' nondestructive = nondestructive ']'
00:35:41++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:41++ export VIRTUAL_ENV
00:35:41++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:41++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:41++ export PATH
00:35:41++ '[' -n '' ']'
00:35:41++ '[' -z '' ']'
00:35:41++ _OLD_VIRTUAL_PS1=
00:35:41++ PS1='(omero-virtualenv) '
00:35:41++ export PS1
00:35:41++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:35:41++ export VIRTUAL_ENV_PROMPT
00:35:41++ hash -r
00:35:41+ source docs/hudson/OMERO.sh
00:35:41++ set -e
00:35:41++ set -u
00:35:41++ set -x
00:35:41++ source docs/hudson/functions.sh
00:35:41++ echo Building merge_ci
00:35:41Building merge_ci
00:35:41++ python3 ./build.py build-dev release-all
00:35:41Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:4100:35:41check-ivy:
00:35:41Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:35:41Created dir: /home/omero/workspace/OMERO-build/src/target
00:35:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:4200:35:42build-scons:
00:35:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:42No sub-builds to iterate on
00:35:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:4300:35:43buildlist:
00:35:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:4300:35:43clean:
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:4300:35:43python-clean:
00:35:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:43/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-309fbf2bcd-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:43 warnings.warn(
00:35:43running clean
00:35:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:4300:35:43python-clean:
00:35:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:43/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-309fbf2bcd-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:43 warnings.warn(
00:35:43running clean
00:35:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:4400:35:44python-clean:
00:35:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:44/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-309fbf2bcd-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:44 warnings.warn(
00:35:44running clean
00:35:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:44Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:4400:35:44build-scons:
00:35:44Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:4400:35:44build:
00:35:44No sub-builds to iterate on
00:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:4400:35:44tools-init:
00:35:44no-op
00:35:4400:35:44retrieve:
00:35:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:2900:36:29prepare:
00:36:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:2900:36:29pre-compile:
00:36:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:3000:36:30compile:
00:36:30no-op
00:36:3000:36:30package:
00:36:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:36:3000:36:30install:
00:36:30:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-594-309fbf2bcd-ice36-b89 :: integration :: Tue Mar 24 00:35:44 UTC 2026
00:36:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:36:30:: publishing :: omero#omero_client
00:36:30 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-309fbf2bcd-ice36-b89/omero_client-5.6.3-594-309fbf2bcd-ice36-b89.jar
00:36:30 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-309fbf2bcd-ice36-b89/omero_client-5.6.3-594-309fbf2bcd-ice36-b89.xml
00:36:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:3100:36:31retrieve:
00:36:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:3100:36:31dist:
00:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:36:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:31Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:36:31Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:36:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:36:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:36:31Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:3100:36:31copy-licenses:
00:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:31Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:36:31Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:36:3100:36:31copy-history:
00:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:3100:36:31copy-etc:
00:36:31Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:36:3100:36:31copy-sql:
00:36:31Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:36:3700:36:37copy-server:
00:36:37 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:36:3700:36:37copy-client:
00:36:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:36:3900:36:39update-version:
00:36:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:3900:36:39create-workdirs:
00:36:39Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:39Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:39Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:36:3900:36:39copy-luts:
00:36:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:39Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:3900:36:39test-compile:
00:36:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:3900:36:39testng-init:
00:36:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:4200:36:41,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:36:4200:36:41,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - No custom configurators were discovered as a service.
00:36:4200:36:41,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:4200:36:41,988 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:4200:36:41,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:4200:36:41,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:4200:36:41,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:4200:36:41,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:4200:36:41,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:4200:36:41,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:4200:36:41,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:4200:36:41,991 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs multiple times on the classpath.
00:36:4200:36:41,991 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:4200:36:41,991 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:4200:36:42,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:4200:36:42,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:4200:36:42,206 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:4200:36:42,208 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:4200:36:42,208 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Please move "immediateFlush" property into the enclosing appender.
00:36:4200:36:42,263 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Setting the "immediateFlush" property of the enclosing appender to true
00:36:4200:36:42,264 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:4200:36:42,264 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:4200:36:42,264 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:4200:36:42,264 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:4200:36:42,264 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:4200:36:42,264 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:4200:36:42,265 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2656db92 - End of configuration.
00:36:4200:36:42,267 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@58649b7e - Registering current configuration as safe fallback point
00:36:4200:36:42,267 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:4200:36:42lifecycle.test-compile:
00:36:42Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:42Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:42warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:43import omero.grid.RawAccessRequest;
00:36:43 ^
00:36:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:43import omero.grid.RawAccessRequest;
00:36:43 ^
00:36:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:44import omero.grid.RawAccessRequest;
00:36:44 ^
00:36:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:44import omero.model.ImportJob;
00:36:44 ^
00:36:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:44import omero.model.ImportJobI;
00:36:44 ^
00:36:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:44 IObject link = (IObject) linkClass.newInstance();
00:36:44 ^
00:36:44 where T is a type-variable:
00:36:44 T extends Object declared in class Class
00:36:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:44 T copy = (T) obj.getClass().newInstance();
00:36:44 ^
00:36:44 where T is a type-variable:
00:36:44 T extends Object declared in class Class
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 RawAccessRequest raw = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 RawAccessRequest raw = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:45 raw.repoUuid = legacy.root().getHash().getValue();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:45 raw.command = "rm";
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:45 raw.args = Arrays.asList(path);
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:45 final IObject link = linkClass.newInstance();
00:36:45 ^
00:36:45 where T is a type-variable:
00:36:45 T extends Object declared in class Class
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:45 originalLink.setChild(annotationClass.newInstance());
00:36:45 ^
00:36:45 where T is a type-variable:
00:36:45 T extends Object declared in class Class
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:45 RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 final RawAccessRequest request = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 final RawAccessRequest request = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:45 request.repoUuid = repo.root().getHash().getValue();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:45 request.command = "exists";
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:45 request.args = Collections.singletonList(dirPath);
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 final RawAccessRequest request = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:45 final RawAccessRequest request = new RawAccessRequest();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:45 request.repoUuid = repo.root().getHash().getValue();
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:45 request.command = "exists";
00:36:45 ^
00:36:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:45 request.args = Collections.singletonList(dirName);
00:36:45 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:46 final ImportJob importJob = new ImportJobI();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:46 final ImportJob importJob = new ImportJobI();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:46 importJob.setImageName(omero.rtypes.rstring(name));
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:46 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:46 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:46 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:46 final String savedName = sent.getImageName().getValue().toString();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:46 final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:46 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:46 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:46 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:46 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:46 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:46 table = svc.getTable(f.getId().getValue());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:46 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:46 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:46 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:36:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:46 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:46 svc.getShapeStatsRestricted(
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:46 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:46 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:46 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:46 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:46 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:46 ^
00:36:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:46 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:46 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:47 p2.setRelatedTo(p1);
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:47 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:47 pixels1.setRelatedTo(pixels2);
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:47 Pixels pixels = pixels1.getRelatedTo();
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:47 Assert.assertNull(pixels1.getRelatedTo());
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:47 pixels1.setRelatedTo(pixels2);
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:47 Pixels pixels = pixels1.getRelatedTo();
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:47 Assert.assertNull(pixels1.getRelatedTo());
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:47 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:47 ^
00:36:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:47 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:47 ^
00:36:47Note: Some input files use unchecked or unsafe operations.
00:36:47Note: Recompile with -Xlint:unchecked for details.
00:36:4788 warnings
00:36:47Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1278291849.tmp
00:36:47Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:47:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-594-309fbf2bcd-ice36-b89 :: integration :: Tue Mar 24 00:36:39 UTC 2026
00:36:47 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:47:: publishing :: omero#OmeroJava-test
00:36:47 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-309fbf2bcd-ice36-b89.jar
00:36:47 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-309fbf2bcd-ice36-b89.xml
00:36:4700:36:47build-eclipse:
00:36:47No sub-builds to iterate on
00:36:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:4700:36:47retrieve:
00:36:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:4900:36:49prepare:
00:36:49Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:5000:36:50release-clients:
00:36:50Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-309fbf2bcd-ice36-b89.zip
00:36:5500:36:55release-zip:
00:36:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-309fbf2bcd-ice36-b89.zip
00:37:0500:37:05BUILD SUCCESSFUL
00:37:05Total time: 1 minute 24 seconds
00:37:05++ '[' -d .git ']'
00:37:05++ python3 ./build.py release-src
00:37:05Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:37:0600:37:06release-src-git:
00:37:06Releasing openmicroscopy-5.6.3-594-309fbf2bcd-ice36-b89
00:37:07 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-309fbf2bcd-ice36-b89.zip
00:37:07 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-309fbf2bcd-ice36-b89-base.zip
00:37:0900:37:09BUILD SUCCESSFUL
00:37:09Total time: 3 seconds
00:37:09++ echo BUILD_NUMBER=89
00:37:09++ echo OMERO_BRANCH=merge_ci
00:37:09++ git_info
00:37:09+++ git rev-parse HEAD
00:37:09++ HEAD=309fbf2bcd61ceddc9f5db4ffa7eca97d584d3e1
00:37:09++ git log --max-count=1 309fbf2bcd61ceddc9f5db4ffa7eca97d584d3e1
00:37:09++ env
00:37:09++ sort
00:37:09Archiving artifacts
00:37:25Finished: SUCCESS
