Skip to content
Sign in

Console

Download View as plain text
23:25:22 Started by upstream project "Trigger" build number 110
23:25:22 originally caused by:
23:25:22  Started by timer
23:25:22 Running as SYSTEM
23:25:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:25:22 The recommended git tool is: NONE
23:25:22 No credentials specified
23:25:22  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:25:22 Fetching changes from the remote Git repository
23:25:22  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:25:22 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
23:25:22  > git --version # timeout=10
23:25:22  > git --version # 'git version 2.52.0'
23:25:22  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:25:28  > git rev-parse origin/merge_ci^{commit} # timeout=10
23:25:28 Checking out Revision e7ae5d45722fe97cfccbda9a62931db7a2e2f706 (origin/merge_ci)
23:25:28  > git config core.sparsecheckout # timeout=10
23:25:29  > git checkout -f e7ae5d45722fe97cfccbda9a62931db7a2e2f706 # timeout=10
23:25:31 Commit message: "Add version.properties to etc/omero.properties"
23:25:31  > git rev-list --no-walk d9c4aec73624f0ed273b6ac2f3dcb76491db7367 # timeout=10
23:25:31 Cleaning workspace
23:25:31  > git rev-parse --verify HEAD # timeout=10
23:25:31 Resetting working tree
23:25:31  > git reset --hard # timeout=10
23:25:31  > git clean -fdx # timeout=10
23:26:02 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 80
23:26:02 [OMERO-build] $ /bin/bash -xe /tmp/jenkins18225711706311382638.sh
23:26:02 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:26:02 + cd src
23:26:02 + export OMERO_BRANCH=merge_ci
23:26:02 + OMERO_BRANCH=merge_ci
23:26:02 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:26:02 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:26:30 + source /home/omero/settings.env
23:26:30 ++ OMERO_DB_HOST=pg
23:26:30 ++ OMERO_DB_USER=postgres
23:26:30 ++ OMERO_DB_PASS=
23:26:30 ++ OMERO_ROOT_PASS=omero
23:26:30 ++ OMERO_DATA_DIR=/OMERO
23:26:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:26:30 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:26:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
23:26:51 Collecting zeroc-ice==3.6.5
23:26:51   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:26:54      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00
23:26:54 Installing collected packages: zeroc-ice
23:26:57 Successfully installed zeroc-ice-3.6.5
23:26:57 
23:26:57 [notice] A new release of pip available: 22.3.1 -> 26.2.1
23:26:57 [notice] To update, run: python3.11 -m pip install --upgrade pip
23:26:58 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:26:59 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:26:59 Collecting setuptools<66
23:26:59   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:26:59 Collecting omero-py
23:26:59   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:26:59 Collecting appdirs
23:26:59   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:27:00 Collecting future
23:27:00   Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:27:00 Collecting numpy<3,>=2
23:27:00   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:27:01 Collecting Pillow>=10.0.0
23:27:01   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:27:02 Collecting PyYAML
23:27:02   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:27:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:27:02 Collecting requests
23:27:02   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:27:02 Collecting portalocker
23:27:02   Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
23:27:02 Collecting charset_normalizer<4,>=2
23:27:02   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:27:03 Collecting idna<4,>=2.5
23:27:03   Using cached idna-3.20-py3-none-any.whl (69 kB)
23:27:03 Collecting urllib3<3,>=1.26
23:27:03   Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:27:03 Collecting certifi>=2023.5.7
23:27:03   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:27:03 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:27:04   Attempting uninstall: setuptools
23:27:04     Found existing installation: setuptools 65.5.1
23:27:05     Uninstalling setuptools-65.5.1:
23:27:05       Successfully uninstalled setuptools-65.5.1
23:27:58 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:27:58 
23:27:58 [notice] A new release of pip available: 22.3.1 -> 26.2.1
23:27:58 [notice] To update, run: python3.11 -m pip install --upgrade pip
23:27:58 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:27:58 ++ deactivate nondestructive
23:27:58 ++ '[' -n '' ']'
23:27:58 ++ '[' -n '' ']'
23:27:58 ++ hash -r
23:27:58 ++ '[' -n '' ']'
23:27:58 ++ unset VIRTUAL_ENV
23:27:58 ++ unset VIRTUAL_ENV_PROMPT
23:27:58 ++ '[' '!' nondestructive = nondestructive ']'
23:27:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:27:58 ++ export VIRTUAL_ENV
23:27:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:58 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:58 ++ export PATH
23:27:58 ++ '[' -n '' ']'
23:27:58 ++ '[' -z '' ']'
23:27:58 ++ _OLD_VIRTUAL_PS1=
23:27:58 ++ PS1='(omero-virtualenv) '
23:27:58 ++ export PS1
23:27:58 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:27:58 ++ export VIRTUAL_ENV_PROMPT
23:27:58 ++ hash -r
23:27:58 + source docs/hudson/OMERO.sh
23:27:58 ++ set -e
23:27:58 ++ set -u
23:27:58 ++ set -x
23:27:58 ++ source docs/hudson/functions.sh
23:27:58 ++ echo Building merge_ci
23:27:58 Building merge_ci
23:27:58 ++ python3 ./build.py build-dev release-all
23:27:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:28:01 
23:28:01 check-ivy:
23:28:01 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:28:01 Created dir: /home/omero/workspace/OMERO-build/src/target
23:28:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:28:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:28:03 
23:28:03 build-scons:
23:28:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:28:05 No sub-builds to iterate on
23:28:06 Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:28:06 
23:28:06 buildlist:
23:28:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:28:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:28:06 
23:28:06 clean:
23:28:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:07 
23:28:07 python-clean:
23:28:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:28:07 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-e7ae5d4572-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:28:07   warnings.warn(
23:28:08 running clean
23:28:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:28:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:28:09 
23:28:09 python-clean:
23:28:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:28:09 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-e7ae5d4572-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:28:09   warnings.warn(
23:28:09 running clean
23:28:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:28:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:28:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:28:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:28:10 
23:28:10 python-clean:
23:28:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:28:10 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-e7ae5d4572-ice36-b89') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:28:10   warnings.warn(
23:28:10 running clean
23:28:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:28:10 Deleting directory /home/omero/workspace/OMERO-build/src/target
23:28:12 
23:28:12 build-scons:
23:28:12 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:28:13 
23:28:13 build:
23:28:13 No sub-builds to iterate on
23:28:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:28:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:28:15 
23:28:15 tools-init:
23:28:15 no-op
23:28:15 
23:28:15 retrieve:
23:28:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:28:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:38 
23:30:38 prepare:
23:30:38 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:30:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:30:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:30:38 
23:30:38 pre-compile:
23:30:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:39 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:53 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:56 
23:30:56 compile:
23:30:56 no-op
23:30:56 
23:30:56 package:
23:30:56 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:31:02 
23:31:02 install:
23:31:02 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-687-e7ae5d4572-ice36-b89 :: integration :: Fri Sep 25 23:28:15 UTC 2026
23:31:02 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:31:02 :: publishing :: omero#omero_client
23:31:02 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-e7ae5d4572-ice36-b89/omero_client-5.6.3-687-e7ae5d4572-ice36-b89.jar
23:31:02 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-e7ae5d4572-ice36-b89/omero_client-5.6.3-687-e7ae5d4572-ice36-b89.xml
23:31:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:03 
23:31:03 retrieve:
23:31:03 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:04 Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:31:04 
23:31:04 dist:
23:31:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:31:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:31:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:31:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:31:05 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:31:05 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:31:05 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:31:07 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:31:08 
23:31:08 copy-licenses:
23:31:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:31:08 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:31:08 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:31:09 
23:31:09 copy-history:
23:31:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:31:09 
23:31:09 copy-etc:
23:31:09 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:31:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:31:11 
23:31:11 copy-sql:
23:31:11 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:31:39 
23:31:39 copy-server:
23:31:39 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:31:39 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:31:48 
23:31:48 copy-client:
23:31:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:31:55 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:31:55 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:32:01 
23:32:01 update-version:
23:32:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:32:01 
23:32:01 create-workdirs:
23:32:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:32:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:32:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:32:01 
23:32:01 copy-luts:
23:32:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:32:01 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:32:01 
23:32:01 test-compile:
23:32:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:32:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:32:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:32:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:32:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:32:04 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:32:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:32:05 
23:32:05 testng-init:
23:32:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:32:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:17 23:32:16,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:32:17 23:32:16,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - No custom configurators were discovered as a service.
23:32:17 23:32:16,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:32:17 23:32:16,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:32:17 23:32:16,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:32:17 23:32:16,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:32:17 23:32:16,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:32:17 23:32:16,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:32:17 23:32:16,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:32:17 23:32:16,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:32:17 23:32:16,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:32:17 23:32:16,923 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7b0be268 - Resource [logback.xml] occurs multiple times on the classpath.
23:32:17 23:32:16,923 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7b0be268 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:32:17 23:32:16,923 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7b0be268 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:32:17 23:32:17,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:32:17 23:32:17,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:32:17 23:32:17,163 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:32:17 23:32:17,165 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@48adcadf - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:32:17 23:32:17,165 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@48adcadf - Please move "immediateFlush" property into the enclosing appender.
23:32:17 23:32:17,230 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@48adcadf - Setting the "immediateFlush" property of the enclosing appender to true
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:32:17 23:32:17,231 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:32:17 23:32:17,232 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2ff7685 - End of configuration.
23:32:17 23:32:17,234 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@f01e723 - Registering current configuration as safe fallback point
23:32:17 23:32:17,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3027ba9b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 319 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:32:17 
23:32:17 lifecycle.test-compile:
23:32:17 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:32:17 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:32:17 warning: [options] bootstrap class path not set in conjunction with -source 8
23:32:17 warning: [options] source value 8 is obsolete and will be removed in a future release
23:32:17 warning: [options] target value 8 is obsolete and will be removed in a future release
23:32:17 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:32:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:20 import omero.grid.RawAccessRequest;
23:32:20                  ^
23:32:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:21 import omero.grid.RawAccessRequest;
23:32:21                  ^
23:32:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:21 import omero.grid.RawAccessRequest;
23:32:21                  ^
23:32:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:21 import omero.model.ImportJob;
23:32:21                   ^
23:32:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:32:21 import omero.model.ImportJobI;
23:32:21                   ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:32:22         IObject link = (IObject) linkClass.newInstance();
23:32:22                                           ^
23:32:22   where T is a type-variable:
23:32:22     T extends Object declared in class Class
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:32:22         T copy = (T) obj.getClass().newInstance();
23:32:22                                    ^
23:32:22   where T is a type-variable:
23:32:22     T extends Object declared in class Class
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:22         RawAccessRequest raw = new RawAccessRequest();
23:32:22         ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:22         RawAccessRequest raw = new RawAccessRequest();
23:32:22                                    ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:32:22         raw.repoUuid = legacy.root().getHash().getValue();
23:32:22            ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:32:22         raw.command = "rm";
23:32:22            ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:32:22         raw.args = Arrays.asList(path);
23:32:22            ^
23:32:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:32:22         final IObject link = linkClass.newInstance();
23:32:22                                       ^
23:32:22   where T is a type-variable:
23:32:22     T extends Object declared in class Class
23:32:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:32:23             originalLink.setChild(annotationClass.newInstance());
23:32:23                                                  ^
23:32:23   where T is a type-variable:
23:32:23     T extends Object declared in class Class
23:32:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:23         RoiResult r = svc.findByImage(id, new RoiOptions());
23:32:23                          ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:24         final RawAccessRequest request = new RawAccessRequest();
23:32:24               ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:24         final RawAccessRequest request = new RawAccessRequest();
23:32:24                                              ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:32:24         request.repoUuid = repo.root().getHash().getValue();
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:32:24         request.command = "exists";
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:32:24         request.args = Collections.singletonList(dirPath);
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:24         final RawAccessRequest request = new RawAccessRequest();
23:32:24               ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:32:24         final RawAccessRequest request = new RawAccessRequest();
23:32:24                                              ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:32:24         request.repoUuid = repo.root().getHash().getValue();
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:32:24         request.command = "exists";
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:32:24         request.args = Collections.singletonList(dirName);
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:32:24                                      ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:24         final ImportJob importJob = new ImportJobI();
23:32:24               ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:32:24         final ImportJob importJob = new ImportJobI();
23:32:24                                         ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:32:24         importJob.setImageName(omero.rtypes.rstring(name));
23:32:24                  ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:32:24         importJob.setImageDescription(omero.rtypes.rstring(desc));
23:32:24                  ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:24         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:32:24         ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:24         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:32:24                           ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:32:24         final String savedName = sent.getImageName().getValue().toString();
23:32:24                                      ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:32:24         final String savedDesc = sent.getImageDescription().getValue().toString();
23:32:24                                      ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:24         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:32:24               ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:32:24         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:32:24                                               ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:32:24         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:32:24         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         RoiResult r = svc.findByImage(image.getId().getValue(),
23:32:24                          ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:24                                 ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:24                                 ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:32:24         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:32:24                                          ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:24                                 ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:32:24         table = svc.getTable(f.getId().getValue());
23:32:24                    ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         RoiResult r = svc.findByImage(image.getId().getValue(),
23:32:24                          ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:32:24         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:32:24         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:32:24         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:32:24                ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:32:24                   ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:32:24                                   ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:32:24                                    ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:32:24                                                    ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:32:24             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:24                                       ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:24                                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:32:24                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:32:24                                                         ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:32:24                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:32:24                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:32:24                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:32:24                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:24         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:32:24                                                        ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:32:24                 svc.getShapeStatsRestricted(
23:32:24                    ^
23:32:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:32:24         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:32:24                                        ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:25         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:32:25                                      ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:25         request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:25         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:25         request.typesToIgnore = Collections.singletonList("Annotation");
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:25                     request.typesToIgnore = Collections.singletonList("Annotation");
23:32:25                            ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:25         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:32:25                                      ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:25         p2.setRelatedTo(p1);
23:32:25           ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:25         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:32:25                                           ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:25         pixels1.setRelatedTo(pixels2);
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:25         Pixels pixels = pixels1.getRelatedTo();
23:32:25                                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:25         Assert.assertNull(pixels1.getRelatedTo());
23:32:25                                  ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:25         pixels1.setRelatedTo(pixels2);
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:25         Pixels pixels = pixels1.getRelatedTo();
23:32:25                                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:25         Assert.assertNull(pixels1.getRelatedTo());
23:32:25                                  ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:25         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:25                                 ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:25         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:25                ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:25         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:25                                 ^
23:32:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:25         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:25                ^
23:32:26 Note: Some input files use unchecked or unsafe operations.
23:32:26 Note: Recompile with -Xlint:unchecked for details.
23:32:26 92 warnings
23:32:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_479423769.tmp
23:32:26 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:32:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:26 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-687-e7ae5d4572-ice36-b89 :: integration :: Fri Sep 25 23:32:04 UTC 2026
23:32:26 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:32:26 :: publishing :: omero#OmeroJava-test
23:32:26 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-e7ae5d4572-ice36-b89.jar
23:32:26 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-e7ae5d4572-ice36-b89.xml
23:32:26 
23:32:26 build-eclipse:
23:32:26 No sub-builds to iterate on
23:32:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:32:27 
23:32:27 retrieve:
23:32:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:32:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:33 
23:32:33 prepare:
23:32:33 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:32:37 
23:32:37 release-clients:
23:32:37 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-687-e7ae5d4572-ice36-b89.zip
23:32:44 
23:32:44 release-zip:
23:32:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-687-e7ae5d4572-ice36-b89.zip
23:32:59 
23:32:59 BUILD SUCCESSFUL
23:32:59 Total time: 5 minutes 1 second
23:32:59 ++ '[' -d .git ']'
23:32:59 ++ python3 ./build.py release-src
23:33:00 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:33:01 
23:33:01 release-src-git:
23:33:01 Releasing openmicroscopy-5.6.3-687-e7ae5d4572-ice36-b89
23:33:03   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-e7ae5d4572-ice36-b89.zip
23:33:03   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-e7ae5d4572-ice36-b89-base.zip
23:33:05 
23:33:05 BUILD SUCCESSFUL
23:33:05 Total time: 5 seconds
23:33:05 ++ echo BUILD_NUMBER=89
23:33:05 ++ echo OMERO_BRANCH=merge_ci
23:33:05 ++ git_info
23:33:05 +++ git rev-parse HEAD
23:33:05 ++ HEAD=e7ae5d45722fe97cfccbda9a62931db7a2e2f706
23:33:05 ++ git log --max-count=1 e7ae5d45722fe97cfccbda9a62931db7a2e2f706
23:33:05 ++ env
23:33:05 ++ sort
23:33:05 Archiving artifacts
23:33:23 Finished: SUCCESS