23:32:31Started by upstream project "Trigger" build number 11323:32:31originally caused by:
23:32:31 Started by timer
23:32:31Running as SYSTEM
23:32:31Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:32:31The recommended git tool is: NONE
23:32:31No credentials specified
23:32:31 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:32:31Fetching changes from the remote Git repository
23:32:31 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:32:31Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:32:31 > git --version # timeout=10
23:32:31 > git --version # 'git version 2.52.0'
23:32:31 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:32:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:32:37Checking out Revision a5751f6843fc4c25778b5a36576359c2ba5c2832 (origin/merge_ci)
23:32:37 > git config core.sparsecheckout # timeout=10
23:32:37 > git checkout -f a5751f6843fc4c25778b5a36576359c2ba5c2832 # timeout=10
23:32:40Commit message: "Add version.properties to etc/omero.properties"
23:32:40 > git rev-list --no-walk 622375e86f14099846a08d28d9a9aea014265955 # timeout=10
23:32:40Cleaning workspace
23:32:40 > git rev-parse --verify HEAD # timeout=10
23:32:40Resetting working tree
23:32:40 > git reset --hard # timeout=10
23:32:40 > git clean -fdx # timeout=10
23:33:28Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8323:33:28[OMERO-build] $ /bin/bash -xe /tmp/jenkins4474249924048482989.sh
23:33:28+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:33:28+ cd src
23:33:28+ export OMERO_BRANCH=merge_ci
23:33:28+ OMERO_BRANCH=merge_ci
23:33:28+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:33:28+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:34:06+ source /home/omero/settings.env
23:34:06++ OMERO_DB_HOST=pg
23:34:06++ OMERO_DB_USER=postgres
23:34:06++ OMERO_DB_PASS=
23:34:06++ OMERO_ROOT_PASS=omero
23:34:06++ OMERO_DATA_DIR=/OMERO
23:34:06++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:34:06+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:34:26+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:34:27Collecting zeroc-ice==3.6.5
23:34:28 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:34:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00
23:34:30Installing collected packages: zeroc-ice
23:34:34Successfully installed zeroc-ice-3.6.5
23:34:3423:34:34[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:34:34[notice] To update, run: python3.11 -m pip install --upgrade pip
23:34:34+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:34:35Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:34:36Collecting setuptools<66
23:34:36 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:34:36Collecting omero-py
23:34:36 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:34:36Collecting appdirs
23:34:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:34:36Collecting future
23:34:36 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:34:37Collecting numpy<3,>=2
23:34:37 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:34:38Collecting Pillow>=10.0.0
23:34:38 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:34:38Collecting PyYAML
23:34:38 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:34:38Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:34:38Collecting requests
23:34:38 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:34:38Collecting portalocker
23:34:39 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
23:34:39Collecting charset_normalizer<4,>=2
23:34:39 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:34:39Collecting idna<4,>=2.5
23:34:39 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:34:39Collecting urllib3<3,>=1.26
23:34:39 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:34:40Collecting certifi>=2023.5.7
23:34:40 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:34:40Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:34:41 Attempting uninstall: setuptools
23:34:41 Found existing installation: setuptools 65.5.1
23:34:41 Uninstalling setuptools-65.5.1:
23:34:42 Successfully uninstalled setuptools-65.5.1
23:35:37Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:35:3723:35:37[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:35:37[notice] To update, run: python3.11 -m pip install --upgrade pip
23:35:37+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:35:37++ deactivate nondestructive
23:35:37++ '[' -n '' ']'
23:35:37++ '[' -n '' ']'
23:35:37++ hash -r
23:35:37++ '[' -n '' ']'
23:35:37++ unset VIRTUAL_ENV
23:35:37++ unset VIRTUAL_ENV_PROMPT
23:35:37++ '[' '!' nondestructive = nondestructive ']'
23:35:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:35:37++ export VIRTUAL_ENV
23:35:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:37++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:37++ export PATH
23:35:37++ '[' -n '' ']'
23:35:37++ '[' -z '' ']'
23:35:37++ _OLD_VIRTUAL_PS1=
23:35:37++ PS1='(omero-virtualenv) '
23:35:37++ export PS1
23:35:37++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:35:37++ export VIRTUAL_ENV_PROMPT
23:35:37++ hash -r
23:35:37+ source docs/hudson/OMERO.sh
23:35:37++ set -e
23:35:37++ set -u
23:35:37++ set -x
23:35:37++ source docs/hudson/functions.sh
23:35:37++ echo Building merge_ci
23:35:37Building merge_ci
23:35:37++ python3 ./build.py build-dev release-all
23:35:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:35:3923:35:39check-ivy:
23:35:39Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:35:39Created dir: /home/omero/workspace/OMERO-build/src/target
23:35:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:4123:35:41build-scons:
23:35:41Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:35:43No sub-builds to iterate on
23:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:35:4423:35:44buildlist:
23:35:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:4423:35:44clean:
23:35:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:4523:35:45python-clean:
23:35:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:35:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-a5751f6843-ice36-b92') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:35:45 warnings.warn(
23:35:45running clean
23:35:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:35:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:35:4623:35:46python-clean:
23:35:46WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:35:46/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-a5751f6843-ice36-b92') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:35:46 warnings.warn(
23:35:46running clean
23:35:46Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:35:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:35:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:35:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:35:4823:35:48python-clean:
23:35:48WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:35:48/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-a5751f6843-ice36-b92') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:35:48 warnings.warn(
23:35:48running clean
23:35:48Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:35:48Deleting directory /home/omero/workspace/OMERO-build/src/target
23:35:4923:35:49build-scons:
23:35:49Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:35:5123:35:51build:
23:35:51No sub-builds to iterate on
23:35:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:35:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:35:5223:35:52tools-init:
23:35:52no-op
23:35:5323:35:53retrieve:
23:35:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:37:3923:37:39prepare:
23:37:39Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:37:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:37:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:37:3923:37:39pre-compile:
23:37:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:37:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:37:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:37:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:37:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:37:5523:37:55compile:
23:37:55no-op
23:37:5523:37:55package:
23:37:55Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:38:0023:38:00install:
23:38:00:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-687-a5751f6843-ice36-b92 :: integration :: Mon Sep 28 23:35:52 UTC 2026
23:38:00 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:38:00:: publishing :: omero#omero_client
23:38:00 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-a5751f6843-ice36-b92/omero_client-5.6.3-687-a5751f6843-ice36-b92.jar
23:38:00 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-a5751f6843-ice36-b92/omero_client-5.6.3-687-a5751f6843-ice36-b92.xml
23:38:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:0123:38:01retrieve:
23:38:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:02Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:38:0223:38:02dist:
23:38:02Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:38:02Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:38:02Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:38:02Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:38:02Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:38:03Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:38:03Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:38:04Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:38:04Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:38:0523:38:05copy-licenses:
23:38:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:38:05Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:38:05Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:38:0623:38:06copy-history:
23:38:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:38:0623:38:06copy-etc:
23:38:06Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:38:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:38:0723:38:07copy-sql:
23:38:07Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:38:3423:38:34copy-server:
23:38:34 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:38:34 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:38:4123:38:41copy-client:
23:38:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:38:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:38:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:38:5323:38:53update-version:
23:38:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:38:5323:38:53create-workdirs:
23:38:53Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:38:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:38:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:38:5323:38:53copy-luts:
23:38:53Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:38:53Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:38:5323:38:53test-compile:
23:38:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:38:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:56Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:38:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:38:5623:38:56testng-init:
23:38:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:39:0823:39:08,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:39:0823:39:08,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - No custom configurators were discovered as a service.
23:39:0823:39:08,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:39:0823:39:08,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:39:0823:39:08,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:39:0823:39:08,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:39:0823:39:08,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 20 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:39:0823:39:08,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:39:0823:39:08,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:39:0823:39:08,099 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:39:0823:39:08,101 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:39:0823:39:08,108 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs multiple times on the classpath.
23:39:0823:39:08,108 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:39:0823:39:08,108 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:39:0823:39:08,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:39:0823:39:08,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:39:0823:39:08,350 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:39:0823:39:08,352 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:39:0823:39:08,352 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - Please move "immediateFlush" property into the enclosing appender.
23:39:0823:39:08,413 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - Setting the "immediateFlush" property of the enclosing appender to true
23:39:0823:39:08,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:39:0823:39:08,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:39:0823:39:08,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:39:0823:39:08,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:39:0823:39:08,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:39:0823:39:08,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:39:0823:39:08,415 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@f01e723 - End of configuration.
23:39:0823:39:08,417 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2b3d5c09 - Registering current configuration as safe fallback point
23:39:0823:39:08,417 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 331 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:39:0823:39:08lifecycle.test-compile:
23:39:08Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:39:08Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:39:09warning: [options] bootstrap class path not set in conjunction with -source 8
23:39:09warning: [options] source value 8 is obsolete and will be removed in a future release
23:39:09warning: [options] target value 8 is obsolete and will be removed in a future release
23:39:09warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:39:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:11import omero.grid.RawAccessRequest;
23:39:11 ^
23:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:12import omero.grid.RawAccessRequest;
23:39:12 ^
23:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:12import omero.grid.RawAccessRequest;
23:39:12 ^
23:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:12import omero.model.ImportJob;
23:39:12 ^
23:39:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:39:12import omero.model.ImportJobI;
23:39:12 ^
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:39:13 IObject link = (IObject) linkClass.newInstance();
23:39:13 ^
23:39:13 where T is a type-variable:
23:39:13 T extends Object declared in class Class
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:39:13 T copy = (T) obj.getClass().newInstance();
23:39:13 ^
23:39:13 where T is a type-variable:
23:39:13 T extends Object declared in class Class
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:13 RawAccessRequest raw = new RawAccessRequest();
23:39:13 ^
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:13 RawAccessRequest raw = new RawAccessRequest();
23:39:13 ^
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:39:13 raw.repoUuid = legacy.root().getHash().getValue();
23:39:13 ^
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:39:13 raw.command = "rm";
23:39:13 ^
23:39:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:39:13 raw.args = Arrays.asList(path);
23:39:13 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:39:14 final IObject link = linkClass.newInstance();
23:39:14 ^
23:39:14 where T is a type-variable:
23:39:14 T extends Object declared in class Class
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:39:14 originalLink.setChild(annotationClass.newInstance());
23:39:14 ^
23:39:14 where T is a type-variable:
23:39:14 T extends Object declared in class Class
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:39:14 RoiResult r = svc.findByImage(id, new RoiOptions());
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:14 final RawAccessRequest request = new RawAccessRequest();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:14 final RawAccessRequest request = new RawAccessRequest();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:39:14 request.repoUuid = repo.root().getHash().getValue();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:39:14 request.command = "exists";
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:39:14 request.args = Collections.singletonList(dirPath);
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:14 final RawAccessRequest request = new RawAccessRequest();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:39:14 final RawAccessRequest request = new RawAccessRequest();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:39:14 request.repoUuid = repo.root().getHash().getValue();
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:39:14 request.command = "exists";
23:39:14 ^
23:39:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:39:14 request.args = Collections.singletonList(dirName);
23:39:14 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:15 final ImportJob importJob = new ImportJobI();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:39:15 final ImportJob importJob = new ImportJobI();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:39:15 importJob.setImageName(omero.rtypes.rstring(name));
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:39:15 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:39:15 final String savedName = sent.getImageName().getValue().toString();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:39:15 final String savedDesc = sent.getImageDescription().getValue().toString();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:39:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:39:15 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:39:15 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 RoiResult r = svc.findByImage(image.getId().getValue(),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:39:15 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:39:15 table = svc.getTable(f.getId().getValue());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 RoiResult r = svc.findByImage(image.getId().getValue(),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:39:15 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:39:15 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:39:15 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:39:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:39:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:39:15 svc.getShapeStatsRestricted(
23:39:15 ^
23:39:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:39:15 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:39:15 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:39:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:39:16 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:39:16 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:39:16 request.typesToIgnore = Collections.singletonList("Annotation");
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:39:16 request.typesToIgnore = Collections.singletonList("Annotation");
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:39:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:39:16 p2.setRelatedTo(p1);
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:39:16 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:39:16 pixels1.setRelatedTo(pixels2);
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:39:16 Pixels pixels = pixels1.getRelatedTo();
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:39:16 Assert.assertNull(pixels1.getRelatedTo());
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:39:16 pixels1.setRelatedTo(pixels2);
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:39:16 Pixels pixels = pixels1.getRelatedTo();
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:39:16 Assert.assertNull(pixels1.getRelatedTo());
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:39:16 ^
23:39:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:39:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:39:16 ^
23:39:16Note: Some input files use unchecked or unsafe operations.
23:39:16Note: Recompile with -Xlint:unchecked for details.
23:39:1692 warnings
23:39:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_852455939.tmp
23:39:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:39:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:39:17:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-687-a5751f6843-ice36-b92 :: integration :: Mon Sep 28 23:38:56 UTC 2026
23:39:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:39:17:: publishing :: omero#OmeroJava-test
23:39:17 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-a5751f6843-ice36-b92.jar
23:39:17 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-a5751f6843-ice36-b92.xml
23:39:1723:39:17build-eclipse:
23:39:17No sub-builds to iterate on
23:39:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:39:1823:39:18retrieve:
23:39:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:39:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:39:2323:39:23prepare:
23:39:23Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:39:2723:39:27release-clients:
23:39:27Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-687-a5751f6843-ice36-b92.zip
23:39:3423:39:34release-zip:
23:39:34Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-687-a5751f6843-ice36-b92.zip
23:39:4823:39:48BUILD SUCCESSFUL
23:39:48Total time: 4 minutes 10 seconds
23:39:48++ '[' -d .git ']'
23:39:48++ python3 ./build.py release-src
23:39:48Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:39:4923:39:49release-src-git:
23:39:49Releasing openmicroscopy-5.6.3-687-a5751f6843-ice36-b92
23:39:51 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-a5751f6843-ice36-b92.zip
23:39:51 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-a5751f6843-ice36-b92-base.zip
23:39:5223:39:52BUILD SUCCESSFUL
23:39:52Total time: 4 seconds
23:39:52++ echo BUILD_NUMBER=92
23:39:52++ echo OMERO_BRANCH=merge_ci
23:39:52++ git_info
23:39:52+++ git rev-parse HEAD
23:39:52++ HEAD=a5751f6843fc4c25778b5a36576359c2ba5c2832
23:39:52++ git log --max-count=1 a5751f6843fc4c25778b5a36576359c2ba5c2832
23:39:52++ env
23:39:52++ sort
23:39:52Archiving artifacts
23:40:10Finished: SUCCESS
