00:35:20Started by upstream project "Trigger" build number 11800:35:20originally caused by:
00:35:20 Started by timer
00:35:20Running as SYSTEM
00:35:20Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:35:20The recommended git tool is: NONE
00:35:20No credentials specified
00:35:20 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:35:20Fetching changes from the remote Git repository
00:35:20 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:35:20Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:35:20 > git --version # timeout=10
00:35:20 > git --version # 'git version 2.47.3'
00:35:20 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:35:20 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:35:20Checking out Revision f238a001e36dde6c587513ece2fe992877092de1 (origin/merge_ci)
00:35:20 > git config core.sparsecheckout # timeout=10
00:35:20 > git checkout -f f238a001e36dde6c587513ece2fe992877092de1 # timeout=10
00:35:20Commit message: "Add version.properties to etc/omero.properties"
00:35:20 > git rev-list --no-walk 0688b024fd9e518a04521d928bcde771f7af9495 # timeout=10
00:35:20Cleaning workspace
00:35:20 > git rev-parse --verify HEAD # timeout=10
00:35:20Resetting working tree
00:35:20 > git reset --hard # timeout=10
00:35:20 > git clean -fdx # timeout=10
00:35:20Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8900:35:21[OMERO-build] $ /bin/bash -xe /tmp/jenkins11969222119128031622.sh
00:35:21+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
00:35:21+ cd src
00:35:21+ export OMERO_BRANCH=merge_ci
00:35:21+ OMERO_BRANCH=merge_ci
00:35:21+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:21+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:21+ source /home/omero/settings.env
00:35:21++ OMERO_DB_HOST=pg
00:35:21++ OMERO_DB_USER=postgres
00:35:21++ OMERO_DB_PASS=
00:35:21++ OMERO_ROOT_PASS=omero
00:35:21++ OMERO_DATA_DIR=/OMERO
00:35:21++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:35:21+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:24+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:35:24Collecting zeroc-ice==3.6.5
00:35:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:35:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.4 MB/s eta 0:00:00
00:35:28Installing collected packages: zeroc-ice
00:35:29Successfully installed zeroc-ice-3.6.5
00:35:2900:35:29[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:35:29[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:29+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:35:29Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:35:29Collecting setuptools<66
00:35:29 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:35:30Collecting omero-py
00:35:30 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
00:35:30Collecting appdirs
00:35:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:30Collecting future
00:35:30 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:35:30Collecting numpy<3,>=2
00:35:30 Using cached numpy-2.4.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:35:31Collecting Pillow>=10.0.0
00:35:31 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:35:31Collecting PyYAML
00:35:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:31Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:35:31Collecting requests
00:35:31 Using cached requests-2.33.0-py3-none-any.whl (65 kB)
00:35:31Collecting portalocker
00:35:31 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:35:31Collecting charset_normalizer<4,>=2
00:35:31 Using cached charset_normalizer-3.4.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (204 kB)
00:35:31Collecting idna<4,>=2.5
00:35:31 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:35:32Collecting urllib3<3,>=1.26
00:35:32 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:35:32Collecting certifi>=2023.5.7
00:35:32 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:35:32Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:35:32 Attempting uninstall: setuptools
00:35:32 Found existing installation: setuptools 65.5.1
00:35:32 Uninstalling setuptools-65.5.1:
00:35:32 Successfully uninstalled setuptools-65.5.1
00:35:37Successfully installed Pillow-12.1.1 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.6 future-1.0.0 idna-3.11 numpy-2.4.3 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.0 setuptools-65.7.0 urllib3-2.6.3
00:35:3700:35:37[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:35:37[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:37+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:35:37++ deactivate nondestructive
00:35:37++ '[' -n '' ']'
00:35:37++ '[' -n '' ']'
00:35:37++ hash -r
00:35:37++ '[' -n '' ']'
00:35:37++ unset VIRTUAL_ENV
00:35:37++ unset VIRTUAL_ENV_PROMPT
00:35:37++ '[' '!' nondestructive = nondestructive ']'
00:35:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:37++ export VIRTUAL_ENV
00:35:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:37++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:37++ export PATH
00:35:37++ '[' -n '' ']'
00:35:37++ '[' -z '' ']'
00:35:37++ _OLD_VIRTUAL_PS1=
00:35:37++ PS1='(omero-virtualenv) '
00:35:37++ export PS1
00:35:37++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:35:37++ export VIRTUAL_ENV_PROMPT
00:35:37++ hash -r
00:35:37+ source docs/hudson/OMERO.sh
00:35:37++ set -e
00:35:37++ set -u
00:35:37++ set -x
00:35:37++ source docs/hudson/functions.sh
00:35:37++ echo Building merge_ci
00:35:37Building merge_ci
00:35:37++ python3 ./build.py build-dev release-all
00:35:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:3800:35:38check-ivy:
00:35:38Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:35:38Created dir: /home/omero/workspace/OMERO-build/src/target
00:35:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:3900:35:39build-scons:
00:35:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:39No sub-builds to iterate on
00:35:39Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:3900:35:39buildlist:
00:35:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:3900:35:39clean:
00:35:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:4000:35:40python-clean:
00:35:40WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:40/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-f238a001e3-ice36-b93') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:40 warnings.warn(
00:35:40running clean
00:35:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:4000:35:40python-clean:
00:35:40WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:40/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-f238a001e3-ice36-b93') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:40 warnings.warn(
00:35:40running clean
00:35:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:4100:35:41python-clean:
00:35:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:41/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-f238a001e3-ice36-b93') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:41 warnings.warn(
00:35:41running clean
00:35:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:41Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:4100:35:41build-scons:
00:35:41Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:4100:35:41build:
00:35:41No sub-builds to iterate on
00:35:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:4100:35:41tools-init:
00:35:41no-op
00:35:4100:35:41retrieve:
00:35:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:2300:36:23prepare:
00:36:23Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:2300:36:23pre-compile:
00:36:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:2300:36:23compile:
00:36:23no-op
00:36:2300:36:23package:
00:36:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:36:2300:36:23install:
00:36:23:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-594-f238a001e3-ice36-b93 :: integration :: Sat Mar 28 00:35:41 UTC 2026
00:36:23 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:36:23:: publishing :: omero#omero_client
00:36:23 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-f238a001e3-ice36-b93/omero_client-5.6.3-594-f238a001e3-ice36-b93.jar
00:36:23 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-f238a001e3-ice36-b93/omero_client-5.6.3-594-f238a001e3-ice36-b93.xml
00:36:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:2400:36:24retrieve:
00:36:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:24Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:2400:36:24dist:
00:36:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:36:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:36:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:24Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:36:24Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:36:24Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:36:24Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:36:24Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:2400:36:24copy-licenses:
00:36:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:24Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:36:24Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:36:2400:36:24copy-history:
00:36:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:2400:36:24copy-etc:
00:36:24Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:36:2400:36:24copy-sql:
00:36:24Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:36:3000:36:30copy-server:
00:36:30 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:36:3100:36:31copy-client:
00:36:31Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:36:3200:36:32update-version:
00:36:32Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:3200:36:32create-workdirs:
00:36:32Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:32Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:32Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:36:3200:36:32copy-luts:
00:36:32Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:32Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:3200:36:32test-compile:
00:36:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:3200:36:32testng-init:
00:36:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:3500:36:35,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:36:3500:36:35,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - No custom configurators were discovered as a service.
00:36:3500:36:35,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:3500:36:35,063 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:3500:36:35,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:3500:36:35,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:3500:36:35,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:3500:36:35,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:3500:36:35,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:3500:36:35,066 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:3500:36:35,066 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:3500:36:35,067 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5242079e - Resource [logback.xml] occurs multiple times on the classpath.
00:36:3500:36:35,067 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5242079e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:3500:36:35,067 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5242079e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:3500:36:35,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:3500:36:35,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:3500:36:35,292 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:3500:36:35,293 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3109f8ae - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:3500:36:35,293 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3109f8ae - Please move "immediateFlush" property into the enclosing appender.
00:36:3500:36:35,349 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3109f8ae - Setting the "immediateFlush" property of the enclosing appender to true
00:36:3500:36:35,350 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:3500:36:35,350 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:3500:36:35,350 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:3500:36:35,350 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:3500:36:35,350 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:3500:36:35,350 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:3500:36:35,351 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1818c0a0 - End of configuration.
00:36:3500:36:35,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@646a5e76 - Registering current configuration as safe fallback point
00:36:3500:36:35,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5914a346 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:3500:36:35lifecycle.test-compile:
00:36:35Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:35Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:35warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:36import omero.grid.RawAccessRequest;
00:36:36 ^
00:36:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:37import omero.grid.RawAccessRequest;
00:36:37 ^
00:36:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:37import omero.grid.RawAccessRequest;
00:36:37 ^
00:36:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:37import omero.model.ImportJob;
00:36:37 ^
00:36:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:37import omero.model.ImportJobI;
00:36:37 ^
00:36:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:37 IObject link = (IObject) linkClass.newInstance();
00:36:37 ^
00:36:37 where T is a type-variable:
00:36:37 T extends Object declared in class Class
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:38 T copy = (T) obj.getClass().newInstance();
00:36:38 ^
00:36:38 where T is a type-variable:
00:36:38 T extends Object declared in class Class
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:38 RawAccessRequest raw = new RawAccessRequest();
00:36:38 ^
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:38 RawAccessRequest raw = new RawAccessRequest();
00:36:38 ^
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:38 raw.repoUuid = legacy.root().getHash().getValue();
00:36:38 ^
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:38 raw.command = "rm";
00:36:38 ^
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:38 raw.args = Arrays.asList(path);
00:36:38 ^
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:38 final IObject link = linkClass.newInstance();
00:36:38 ^
00:36:38 where T is a type-variable:
00:36:38 T extends Object declared in class Class
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:38 originalLink.setChild(annotationClass.newInstance());
00:36:38 ^
00:36:38 where T is a type-variable:
00:36:38 T extends Object declared in class Class
00:36:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:38 RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:38 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:39 final RawAccessRequest request = new RawAccessRequest();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:39 final RawAccessRequest request = new RawAccessRequest();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:39 request.repoUuid = repo.root().getHash().getValue();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:39 request.command = "exists";
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:39 request.args = Collections.singletonList(dirPath);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:39 final RawAccessRequest request = new RawAccessRequest();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:39 final RawAccessRequest request = new RawAccessRequest();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:39 request.repoUuid = repo.root().getHash().getValue();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:39 request.command = "exists";
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:39 request.args = Collections.singletonList(dirName);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:39 final ImportJob importJob = new ImportJobI();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:39 final ImportJob importJob = new ImportJobI();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:39 importJob.setImageName(omero.rtypes.rstring(name));
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:39 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:39 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:39 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:39 final String savedName = sent.getImageName().getValue().toString();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:39 final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:39 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:39 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:39 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:39 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:39 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:39 table = svc.getTable(f.getId().getValue());
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:39 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:39 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:39 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:36:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:39 svc.getShapeStatsRestricted(
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:39 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:39 ^
00:36:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:39 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:40 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:40 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:40 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:40 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:40 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:40 p2.setRelatedTo(p1);
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:40 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:40 pixels1.setRelatedTo(pixels2);
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:40 Pixels pixels = pixels1.getRelatedTo();
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:40 Assert.assertNull(pixels1.getRelatedTo());
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:40 pixels1.setRelatedTo(pixels2);
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:40 Pixels pixels = pixels1.getRelatedTo();
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:40 Assert.assertNull(pixels1.getRelatedTo());
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:40 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:40 ^
00:36:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:40 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:40 ^
00:36:40Note: Some input files use unchecked or unsafe operations.
00:36:40Note: Recompile with -Xlint:unchecked for details.
00:36:4088 warnings
00:36:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_182502523.tmp
00:36:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:40:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-594-f238a001e3-ice36-b93 :: integration :: Sat Mar 28 00:36:32 UTC 2026
00:36:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:40:: publishing :: omero#OmeroJava-test
00:36:40 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-f238a001e3-ice36-b93.jar
00:36:40 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-f238a001e3-ice36-b93.xml
00:36:4000:36:40build-eclipse:
00:36:40No sub-builds to iterate on
00:36:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:4000:36:40retrieve:
00:36:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:4200:36:42prepare:
00:36:42Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:4300:36:43release-clients:
00:36:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-f238a001e3-ice36-b93.zip
00:36:4800:36:48release-zip:
00:36:48Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-f238a001e3-ice36-b93.zip
00:36:5900:36:59BUILD SUCCESSFUL
00:36:59Total time: 1 minute 20 seconds
00:36:59++ '[' -d .git ']'
00:36:59++ python3 ./build.py release-src
00:36:59Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:36:5900:36:59release-src-git:
00:36:59Releasing openmicroscopy-5.6.3-594-f238a001e3-ice36-b93
00:37:01 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-f238a001e3-ice36-b93.zip
00:37:01 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-f238a001e3-ice36-b93-base.zip
00:37:0200:37:02BUILD SUCCESSFUL
00:37:02Total time: 3 seconds
00:37:02++ echo BUILD_NUMBER=93
00:37:02++ echo OMERO_BRANCH=merge_ci
00:37:02++ git_info
00:37:02+++ git rev-parse HEAD
00:37:02++ HEAD=f238a001e36dde6c587513ece2fe992877092de1
00:37:02++ git log --max-count=1 f238a001e36dde6c587513ece2fe992877092de1
00:37:02++ env
00:37:02++ sort
00:37:02Archiving artifacts
00:37:18Finished: SUCCESS
