07:37:07Started by upstream project "Trigger" build number 19007:37:07originally caused by:
07:37:07 Started by user devspace07:37:07Running as SYSTEM
07:37:07Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
07:37:07The recommended git tool is: NONE
07:37:07No credentials specified
07:37:07 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
07:37:07Fetching changes from the remote Git repository
07:37:07 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
07:37:07Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git07:37:07 > git --version # timeout=10
07:37:07 > git --version # 'git version 2.47.3'
07:37:07 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:37:10 > git rev-parse origin/merge_ci^{commit} # timeout=10
07:37:10Checking out Revision 18e7ec8f231b1a69638e8b9b9b3083732e3413a6 (origin/merge_ci)
07:37:10 > git config core.sparsecheckout # timeout=10
07:37:10 > git checkout -f 18e7ec8f231b1a69638e8b9b9b3083732e3413a6 # timeout=10
07:37:10Commit message: "Add version.properties to etc/omero.properties"
07:37:10 > git rev-list --no-walk f2a9784d2954df2c015a30a229d206279984e7ae # timeout=10
07:37:10Cleaning workspace
07:37:10 > git rev-parse --verify HEAD # timeout=10
07:37:10Resetting working tree
07:37:10 > git reset --hard # timeout=10
07:37:11 > git clean -fdx # timeout=10
07:37:11Copied 6 artifacts from "OMERO-python-superbuild-build" build number 13407:37:11[OMERO-build] $ /bin/bash -xe /tmp/jenkins8316125099594532780.sh
07:37:11+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
07:37:11+ cd src
07:37:11+ export OMERO_BRANCH=merge_ci
07:37:11+ OMERO_BRANCH=merge_ci
07:37:11+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
07:37:11+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
07:37:11+ source /home/omero/settings.env
07:37:11++ OMERO_DB_HOST=pg
07:37:11++ OMERO_DB_USER=postgres
07:37:11++ OMERO_DB_PASS=
07:37:11++ OMERO_ROOT_PASS=omero
07:37:11++ OMERO_DATA_DIR=/OMERO
07:37:11++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:37:11+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
07:37:15+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl07:37:15Collecting zeroc-ice==3.6.5
07:37:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
07:37:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00
07:37:18Installing collected packages: zeroc-ice
07:37:19Successfully installed zeroc-ice-3.6.5
07:37:1907:37:19[notice] A new release of pip available: 22.3.1 -> 26.1.1
07:37:19[notice] To update, run: python3.11 -m pip install --upgrade pip
07:37:19+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
07:37:20Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
07:37:20Collecting setuptools<66
07:37:20 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
07:37:20Collecting omero-py
07:37:21 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
07:37:21Collecting appdirs
07:37:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
07:37:21Collecting future
07:37:21 Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:37:21Collecting numpy<3,>=2
07:37:21 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
07:37:22Collecting Pillow>=10.0.0
07:37:22 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
07:37:22Collecting PyYAML
07:37:22 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
07:37:22Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
07:37:23Collecting requests
07:37:23 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
07:37:23Collecting portalocker
07:37:23 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
07:37:23Collecting charset_normalizer<4,>=2
07:37:23 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
07:37:23Collecting idna<4,>=2.5
07:37:23 Using cached idna-3.13-py3-none-any.whl (68 kB)
07:37:23Collecting urllib3<3,>=1.26
07:37:23 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
07:37:23Collecting certifi>=2023.5.7
07:37:24 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB)
07:37:24Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
07:37:24 Attempting uninstall: setuptools
07:37:24 Found existing installation: setuptools 65.5.1
07:37:24 Uninstalling setuptools-65.5.1:
07:37:24 Successfully uninstalled setuptools-65.5.1
07:37:29Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.4.22 charset_normalizer-3.4.7 future-1.0.0 idna-3.13 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
07:37:2907:37:29[notice] A new release of pip available: 22.3.1 -> 26.1.1
07:37:29[notice] To update, run: python3.11 -m pip install --upgrade pip
07:37:29+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
07:37:29++ deactivate nondestructive
07:37:29++ '[' -n '' ']'
07:37:29++ '[' -n '' ']'
07:37:29++ hash -r
07:37:29++ '[' -n '' ']'
07:37:29++ unset VIRTUAL_ENV
07:37:29++ unset VIRTUAL_ENV_PROMPT
07:37:29++ '[' '!' nondestructive = nondestructive ']'
07:37:29++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
07:37:29++ export VIRTUAL_ENV
07:37:29++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:37:29++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:37:29++ export PATH
07:37:29++ '[' -n '' ']'
07:37:29++ '[' -z '' ']'
07:37:29++ _OLD_VIRTUAL_PS1=
07:37:29++ PS1='(omero-virtualenv) '
07:37:29++ export PS1
07:37:29++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
07:37:29++ export VIRTUAL_ENV_PROMPT
07:37:29++ hash -r
07:37:29+ source docs/hudson/OMERO.sh
07:37:29++ set -e
07:37:29++ set -u
07:37:29++ set -x
07:37:29++ source docs/hudson/functions.sh
07:37:29++ echo Building merge_ci
07:37:29Building merge_ci
07:37:29++ python3 ./build.py build-dev release-all
07:37:30Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:37:3007:37:30check-ivy:
07:37:30Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
07:37:30Created dir: /home/omero/workspace/OMERO-build/src/target
07:37:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:37:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:37:3107:37:31build-scons:
07:37:31Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:37:31No sub-builds to iterate on
07:37:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:37:3207:37:32buildlist:
07:37:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:37:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:37:3207:37:32clean:
07:37:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:37:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:37:3207:37:32python-clean:
07:37:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:37:32/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-18e7ec8f23-ice36-b143') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:37:32 warnings.warn(
07:37:32running clean
07:37:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
07:37:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:37:3207:37:32python-clean:
07:37:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:37:32/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-18e7ec8f23-ice36-b143') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:37:32 warnings.warn(
07:37:32running clean
07:37:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:37:3307:37:33python-clean:
07:37:33WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:37:33/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-18e7ec8f23-ice36-b143') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:37:33 warnings.warn(
07:37:33running clean
07:37:33Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
07:37:33Deleting directory /home/omero/workspace/OMERO-build/src/target
07:37:3307:37:33build-scons:
07:37:33Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:37:3307:37:33build:
07:37:33No sub-builds to iterate on
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:37:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:37:3307:37:33tools-init:
07:37:33no-op
07:37:3407:37:34retrieve:
07:37:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:37:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:2407:38:24prepare:
07:38:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:38:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:38:2407:38:24pre-compile:
07:38:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:38:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:38:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:38:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:38:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:38:2407:38:24compile:
07:38:24no-op
07:38:2407:38:24package:
07:38:24Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
07:38:2507:38:25install:
07:38:25:: delivering :: omero#omero_client;working@26c1bc7ef6b1 :: 5.6.3-594-18e7ec8f23-ice36-b143 :: integration :: Tue May 05 07:37:33 UTC 2026
07:38:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
07:38:25:: publishing :: omero#omero_client
07:38:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-18e7ec8f23-ice36-b143/omero_client-5.6.3-594-18e7ec8f23-ice36-b143.jar
07:38:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-18e7ec8f23-ice36-b143/omero_client-5.6.3-594-18e7ec8f23-ice36-b143.xml
07:38:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:38:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:38:2507:38:25retrieve:
07:38:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:38:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:25Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:38:2507:38:25dist:
07:38:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
07:38:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
07:38:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:38:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:38:25Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
07:38:25Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
07:38:25Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
07:38:25Entering /home/omero/workspace/OMERO-build/src/components/tests...
07:38:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:38:2607:38:26copy-licenses:
07:38:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:38:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
07:38:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
07:38:2607:38:26copy-history:
07:38:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:38:2607:38:26copy-etc:
07:38:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
07:38:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
07:38:2607:38:26copy-sql:
07:38:26Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
07:38:3307:38:33copy-server:
07:38:33 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
07:38:3407:38:34copy-client:
07:38:34Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
07:38:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
07:38:3507:38:35update-version:
07:38:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
07:38:3507:38:35create-workdirs:
07:38:35Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
07:38:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var
07:38:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
07:38:3507:38:35copy-luts:
07:38:35Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:38:35Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:38:3507:38:35test-compile:
07:38:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:38:3507:38:35testng-init:
07:38:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:38:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:3907:38:38,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
07:38:3907:38:38,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - No custom configurators were discovered as a service.
07:38:3907:38:38,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:38:3907:38:38,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:38:3907:38:38,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:38:3907:38:38,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:38:3907:38:38,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:38:3907:38:38,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:38:3907:38:38,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:38:3907:38:38,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:38:3907:38:38,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:38:3907:38:38,975 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs multiple times on the classpath.
07:38:3907:38:38,975 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:38:3907:38:38,975 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:38:3907:38:39,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:38:3907:38:39,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:38:3907:38:39,190 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:38:3907:38:39,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:38:3907:38:39,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - Please move "immediateFlush" property into the enclosing appender.
07:38:3907:38:39,247 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - Setting the "immediateFlush" property of the enclosing appender to true
07:38:3907:38:39,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:38:3907:38:39,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:38:3907:38:39,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:38:3907:38:39,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:38:3907:38:39,248 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:38:3907:38:39,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:38:3907:38:39,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6a75d12 - End of configuration.
07:38:3907:38:39,251 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30082a5e - Registering current configuration as safe fallback point
07:38:3907:38:39,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:38:3907:38:39lifecycle.test-compile:
07:38:39Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:38:39Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:38:39warning: [options] bootstrap class path not set in conjunction with -source 8
07:38:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:40import omero.grid.RawAccessRequest;
07:38:40 ^
07:38:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:40import omero.grid.RawAccessRequest;
07:38:40 ^
07:38:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:41import omero.grid.RawAccessRequest;
07:38:41 ^
07:38:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:41import omero.model.ImportJob;
07:38:41 ^
07:38:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:38:41import omero.model.ImportJobI;
07:38:41 ^
07:38:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
07:38:41 IObject link = (IObject) linkClass.newInstance();
07:38:41 ^
07:38:41 where T is a type-variable:
07:38:41 T extends Object declared in class Class
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
07:38:42 T copy = (T) obj.getClass().newInstance();
07:38:42 ^
07:38:42 where T is a type-variable:
07:38:42 T extends Object declared in class Class
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:42 RawAccessRequest raw = new RawAccessRequest();
07:38:42 ^
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:42 RawAccessRequest raw = new RawAccessRequest();
07:38:42 ^
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:38:42 raw.repoUuid = legacy.root().getHash().getValue();
07:38:42 ^
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
07:38:42 raw.command = "rm";
07:38:42 ^
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
07:38:42 raw.args = Arrays.asList(path);
07:38:42 ^
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
07:38:42 final IObject link = linkClass.newInstance();
07:38:42 ^
07:38:42 where T is a type-variable:
07:38:42 T extends Object declared in class Class
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
07:38:42 originalLink.setChild(annotationClass.newInstance());
07:38:42 ^
07:38:42 where T is a type-variable:
07:38:42 T extends Object declared in class Class
07:38:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:38:42 RoiResult r = svc.findByImage(id, new RoiOptions());
07:38:42 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:43 final RawAccessRequest request = new RawAccessRequest();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:43 final RawAccessRequest request = new RawAccessRequest();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:38:43 request.repoUuid = repo.root().getHash().getValue();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
07:38:43 request.command = "exists";
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
07:38:43 request.args = Collections.singletonList(dirPath);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:43 final RawAccessRequest request = new RawAccessRequest();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:38:43 final RawAccessRequest request = new RawAccessRequest();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:38:43 request.repoUuid = repo.root().getHash().getValue();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
07:38:43 request.command = "exists";
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
07:38:43 request.args = Collections.singletonList(dirName);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:43 final ImportJob importJob = new ImportJobI();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:38:43 final ImportJob importJob = new ImportJobI();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
07:38:43 importJob.setImageName(omero.rtypes.rstring(name));
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
07:38:43 importJob.setImageDescription(omero.rtypes.rstring(desc));
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:38:43 final String savedName = sent.getImageName().getValue().toString();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:38:43 final String savedDesc = sent.getImageDescription().getValue().toString();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:38:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:38:43 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:38:43 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 RoiResult r = svc.findByImage(image.getId().getValue(),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
07:38:43 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
07:38:43 table = svc.getTable(f.getId().getValue());
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 RoiResult r = svc.findByImage(image.getId().getValue(),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:38:43 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:38:43 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:38:43 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
07:38:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:38:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:38:43 svc.getShapeStatsRestricted(
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:38:43 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
07:38:43 ^
07:38:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:38:43 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:38:43 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:38:44 request.typesToIgnore = Collections.singletonList("TagAnnotation");
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:38:44 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:38:44 request.typesToIgnore = Collections.singletonList("Annotation");
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:38:44 request.typesToIgnore = Collections.singletonList("Annotation");
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:38:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:38:44 p2.setRelatedTo(p1);
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:38:44 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:38:44 pixels1.setRelatedTo(pixels2);
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:38:44 Pixels pixels = pixels1.getRelatedTo();
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:38:44 Assert.assertNull(pixels1.getRelatedTo());
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:38:44 pixels1.setRelatedTo(pixels2);
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:38:44 Pixels pixels = pixels1.getRelatedTo();
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:38:44 Assert.assertNull(pixels1.getRelatedTo());
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:38:44 ^
07:38:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:38:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:38:44 ^
07:38:44Note: Some input files use unchecked or unsafe operations.
07:38:44Note: Recompile with -Xlint:unchecked for details.
07:38:4488 warnings
07:38:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1647752264.tmp
07:38:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
07:38:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:44:: delivering :: omero#OmeroJava-test;working@26c1bc7ef6b1 :: 5.6.3-594-18e7ec8f23-ice36-b143 :: integration :: Tue May 05 07:38:35 UTC 2026
07:38:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
07:38:44:: publishing :: omero#OmeroJava-test
07:38:44 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-18e7ec8f23-ice36-b143.jar
07:38:44 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-18e7ec8f23-ice36-b143.xml
07:38:4407:38:44build-eclipse:
07:38:44No sub-builds to iterate on
07:38:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:38:4407:38:44retrieve:
07:38:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:38:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:38:4607:38:46prepare:
07:38:46Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
07:38:4707:38:47release-clients:
07:38:47Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-18e7ec8f23-ice36-b143.zip
07:38:5207:38:52release-zip:
07:38:52Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-18e7ec8f23-ice36-b143.zip
07:39:0207:39:02BUILD SUCCESSFUL
07:39:02Total time: 1 minute 32 seconds
07:39:02++ '[' -d .git ']'
07:39:02++ python3 ./build.py release-src
07:39:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:39:0307:39:03release-src-git:
07:39:03Releasing openmicroscopy-5.6.3-594-18e7ec8f23-ice36-b143
07:39:04 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-18e7ec8f23-ice36-b143.zip
07:39:04 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-18e7ec8f23-ice36-b143-base.zip
07:39:0607:39:06BUILD SUCCESSFUL
07:39:06Total time: 3 seconds
07:39:06++ echo BUILD_NUMBER=143
07:39:06++ echo OMERO_BRANCH=merge_ci
07:39:06++ git_info
07:39:06+++ git rev-parse HEAD
07:39:06++ HEAD=18e7ec8f231b1a69638e8b9b9b3083732e3413a6
07:39:06++ git log --max-count=1 18e7ec8f231b1a69638e8b9b9b3083732e3413a6
07:39:06++ env
07:39:06++ sort
07:39:06Archiving artifacts
07:39:22Finished: SUCCESS
