08:24:31Started by upstream project "Trigger" build number 4408:24:31originally caused by:
08:24:31 Started by user devspace08:24:31Running as SYSTEM
08:24:31Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:24:31The recommended git tool is: NONE
08:24:31No credentials specified
08:24:31 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:24:31Fetching changes from the remote Git repository
08:24:31 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:24:31Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:24:31 > git --version # timeout=10
08:24:31 > git --version # 'git version 2.39.3'
08:24:31 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:24:38 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:24:38Checking out Revision 801f831fdea4c0e4b84da649bef5c7c36f74f2cd (origin/merge_ci)
08:24:38 > git config core.sparsecheckout # timeout=10
08:24:38 > git checkout -f 801f831fdea4c0e4b84da649bef5c7c36f74f2cd # timeout=10
08:24:39Commit message: "Add version.properties to etc/omero.properties"
08:24:39 > git rev-list --no-walk b6a142b3c3b9dbfcc71169851fd8e040dce977d1 # timeout=10
08:24:39Cleaning workspace
08:24:39 > git rev-parse --verify HEAD # timeout=10
08:24:39Resetting working tree
08:24:39 > git reset --hard # timeout=10
08:24:39 > git clean -fdx # timeout=10
08:24:40Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3708:24:40[OMERO-build] $ /bin/bash -xe /tmp/jenkins11970903641682701975.sh
08:24:40+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
08:24:40+ cd src
08:24:40+ export OMERO_BRANCH=merge_ci
08:24:40+ OMERO_BRANCH=merge_ci
08:24:40+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:24:40+ source /home/omero/settings.env
08:24:40++ OMERO_DB_HOST=pg
08:24:40++ OMERO_DB_USER=postgres
08:24:40++ OMERO_DB_PASS=
08:24:40++ OMERO_ROOT_PASS=omero
08:24:40++ OMERO_DATA_DIR=/OMERO
08:24:40++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:24:40+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:24:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl08:24:45Collecting zeroc-ice==3.6.5
08:24:45 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:24:47WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
08:24:47You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:24:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
08:24:48Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
08:24:48Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
08:24:48Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
08:24:48Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
08:24:48Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:24:48Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:24:48Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
08:24:48Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
08:24:48Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
08:24:48Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
08:24:48Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
08:24:48Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
08:24:48Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
08:24:48Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
08:24:48WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
08:24:48You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:24:49+ source docs/hudson/OMERO.sh
08:24:49++ set -e
08:24:49++ set -u
08:24:49++ set -x
08:24:49++ source docs/hudson/functions.sh
08:24:49++ echo Building merge_ci
08:24:49Building merge_ci
08:24:49++ python3 ./build.py build-dev release-all
08:24:49OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:24:49Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:24:4908:24:49check-ivy:
08:24:49Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:24:49Created dir: /home/omero/workspace/OMERO-build/src/target
08:24:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:5108:24:51build-scons:
08:24:51Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:24:51No sub-builds to iterate on
08:24:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:24:5208:24:52buildlist:
08:24:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:5208:24:52clean:
08:24:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:5208:24:52python-clean:
08:24:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:24:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-454-801f831fde-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:24:52 warnings.warn(
08:24:52running clean
08:24:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:24:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:24:5208:24:52python-clean:
08:24:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:24:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-454-801f831fde-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:24:52 warnings.warn(
08:24:52running clean
08:24:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:24:5308:24:53python-clean:
08:24:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:24:53/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-454-801f831fde-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:24:53 warnings.warn(
08:24:53running clean
08:24:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:24:53Deleting directory /home/omero/workspace/OMERO-build/src/target
08:24:5308:24:53build-scons:
08:24:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:24:5308:24:53build:
08:24:53No sub-builds to iterate on
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:24:5308:24:53tools-init:
08:24:53no-op
08:24:5308:24:53retrieve:
08:24:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:24:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:24:54WARNING: An illegal reflective access operation has occurred
08:24:54WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:24:54WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:24:54WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:24:54WARNING: All illegal access operations will be denied in a future release
08:25:4708:25:47prepare:
08:25:47Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:25:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:25:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:25:4708:25:47pre-compile:
08:25:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:25:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:25:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:25:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:25:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:25:4808:25:48compile:
08:25:48no-op
08:25:4808:25:48package:
08:25:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:25:4808:25:48install:
08:25:48:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-454-801f831fde-ice36 :: integration :: Fri Apr 19 08:24:53 UTC 2024
08:25:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:25:49:: publishing :: omero#omero_client
08:25:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-454-801f831fde-ice36/omero_client-5.6.3-454-801f831fde-ice36.jar
08:25:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-454-801f831fde-ice36/omero_client-5.6.3-454-801f831fde-ice36.xml
08:25:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:25:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:25:4908:25:49retrieve:
08:25:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:25:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:25:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:25:5008:25:50dist:
08:25:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:25:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:25:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:25:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:25:50Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:25:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
08:25:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:25:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:25:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:25:5008:25:50copy-licenses:
08:25:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:25:50Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:25:50Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:25:5008:25:50copy-history:
08:25:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:25:5008:25:50copy-etc:
08:25:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:25:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:25:5008:25:50copy-sql:
08:25:50Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:26:0508:26:05copy-server:
08:26:05 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:26:0508:26:05copy-client:
08:26:05Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:26:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:26:0708:26:07update-version:
08:26:07Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:26:0708:26:07create-workdirs:
08:26:07Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:26:07Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:26:0708:26:07copy-luts:
08:26:07Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:26:07Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:26:0708:26:07test-compile:
08:26:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:26:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:26:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:26:0808:26:08testng-init:
08:26:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:26:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:26:1308:26:12,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:26:1308:26:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - No custom configurators were discovered as a service.
08:26:1308:26:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:26:1308:26:12,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:26:1308:26:12,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:26:1308:26:12,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:26:1308:26:12,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:26:1308:26:12,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:26:1308:26:12,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:26:1308:26:12,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:26:1308:26:12,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:26:1308:26:12,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs multiple times on the classpath.
08:26:1308:26:12,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:26:1308:26:12,772 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:26:1308:26:13,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:26:1308:26:13,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:26:1308:26:13,170 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:26:1308:26:13,173 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:26:1308:26:13,173 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Please move "immediateFlush" property into the enclosing appender.
08:26:1308:26:13,286 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Setting the "immediateFlush" property of the enclosing appender to true
08:26:1308:26:13,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:26:1308:26:13,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:26:1308:26:13,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:26:1308:26:13,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:26:1308:26:13,288 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:26:1308:26:13,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:26:1308:26:13,291 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33ce766b - End of configuration.
08:26:1308:26:13,295 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5bd8b901 - Registering current configuration as safe fallback point
08:26:1308:26:13,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 526 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:26:1308:26:13lifecycle.test-compile:
08:26:13Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:26:13Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:26:14warning: [options] bootstrap class path not set in conjunction with -source 8
08:26:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:16import omero.grid.RawAccessRequest;
08:26:16 ^
08:26:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:17import omero.grid.RawAccessRequest;
08:26:17 ^
08:26:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:17import omero.grid.RawAccessRequest;
08:26:17 ^
08:26:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:17import omero.model.ImportJob;
08:26:17 ^
08:26:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:26:17import omero.model.ImportJobI;
08:26:17 ^
08:26:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:26:18 IObject link = (IObject) linkClass.newInstance();
08:26:18 ^
08:26:18 where T is a type-variable:
08:26:18 T extends Object declared in class Class
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:26:19 T copy = (T) obj.getClass().newInstance();
08:26:19 ^
08:26:19 where T is a type-variable:
08:26:19 T extends Object declared in class Class
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:19 RawAccessRequest raw = new RawAccessRequest();
08:26:19 ^
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:19 RawAccessRequest raw = new RawAccessRequest();
08:26:19 ^
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:26:19 raw.repoUuid = legacy.root().getHash().getValue();
08:26:19 ^
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:26:19 raw.command = "rm";
08:26:19 ^
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:26:19 raw.args = Arrays.asList(path);
08:26:19 ^
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:26:19 final IObject link = linkClass.newInstance();
08:26:19 ^
08:26:19 where T is a type-variable:
08:26:19 T extends Object declared in class Class
08:26:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:26:19 originalLink.setChild(annotationClass.newInstance());
08:26:19 ^
08:26:19 where T is a type-variable:
08:26:19 T extends Object declared in class Class
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:26:20 RoiResult r = svc.findByImage(id, new RoiOptions());
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:20 final RawAccessRequest request = new RawAccessRequest();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:20 final RawAccessRequest request = new RawAccessRequest();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:26:20 request.repoUuid = repo.root().getHash().getValue();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:26:20 request.command = "exists";
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:26:20 request.args = Collections.singletonList(dirPath);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:20 final RawAccessRequest request = new RawAccessRequest();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:26:20 final RawAccessRequest request = new RawAccessRequest();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:26:20 request.repoUuid = repo.root().getHash().getValue();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:26:20 request.command = "exists";
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:26:20 request.args = Collections.singletonList(dirName);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:20 final ImportJob importJob = new ImportJobI();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:26:20 final ImportJob importJob = new ImportJobI();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:26:20 importJob.setImageName(omero.rtypes.rstring(name));
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:26:20 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:20 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:20 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:26:20 final String savedName = sent.getImageName().getValue().toString();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:26:20 final String savedDesc = sent.getImageDescription().getValue().toString();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:20 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:26:20 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:26:20 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:26:20 ^
08:26:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:26:20 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:26:20 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 RoiResult r = svc.findByImage(image.getId().getValue(),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:26:21 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:26:21 table = svc.getTable(f.getId().getValue());
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 RoiResult r = svc.findByImage(image.getId().getValue(),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:26:21 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:26:21 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:26:21 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:26:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:26:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:26:21 svc.getShapeStatsRestricted(
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:26:21 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:26:21 ^
08:26:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:26:21 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:26:21 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:26:22 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:26:22 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:26:22 request.typesToIgnore = Collections.singletonList("Annotation");
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:26:22 request.typesToIgnore = Collections.singletonList("Annotation");
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:26:22 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:26:22 p2.setRelatedTo(p1);
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:26:22 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:26:22 pixels1.setRelatedTo(pixels2);
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:26:22 Pixels pixels = pixels1.getRelatedTo();
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:26:22 Assert.assertNull(pixels1.getRelatedTo());
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:26:22 pixels1.setRelatedTo(pixels2);
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:26:22 Pixels pixels = pixels1.getRelatedTo();
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:26:22 Assert.assertNull(pixels1.getRelatedTo());
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:26:22 ^
08:26:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:26:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:26:22 ^
08:26:22Note: Some input files use unchecked or unsafe operations.
08:26:22Note: Recompile with -Xlint:unchecked for details.
08:26:2288 warnings
08:26:22Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1885670463.tmp
08:26:22Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:26:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:26:22:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-454-801f831fde-ice36 :: integration :: Fri Apr 19 08:26:08 UTC 2024
08:26:22 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:26:22:: publishing :: omero#OmeroJava-test
08:26:22 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-454-801f831fde-ice36.jar
08:26:22 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-454-801f831fde-ice36.xml
08:26:2208:26:22build-eclipse:
08:26:22No sub-builds to iterate on
08:26:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:26:2308:26:23retrieve:
08:26:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:26:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:26:2608:26:26prepare:
08:26:26Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:26:2808:26:28release-clients:
08:26:28Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-454-801f831fde-ice36.zip
08:26:3508:26:35release-zip:
08:26:35Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-454-801f831fde-ice36.zip
08:26:4808:26:48BUILD SUCCESSFUL
08:26:48Total time: 1 minute 59 seconds
08:26:49++ '[' -d .git ']'
08:26:49++ python3 ./build.py release-src
08:26:49OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:26:49Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:26:5008:26:50release-src-git:
08:26:50Releasing openmicroscopy-5.6.3-454-801f831fde-ice36
08:26:52 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-454-801f831fde-ice36.zip
08:26:52 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-454-801f831fde-ice36-base.zip
08:26:5308:26:53BUILD SUCCESSFUL
08:26:53Total time: 4 seconds
08:26:53++ echo BUILD_NUMBER=37
08:26:53++ echo OMERO_BRANCH=merge_ci
08:26:53++ git_info
08:26:53+++ git rev-parse HEAD
08:26:53++ HEAD=801f831fdea4c0e4b84da649bef5c7c36f74f2cd
08:26:53++ git log --max-count=1 801f831fdea4c0e4b84da649bef5c7c36f74f2cd
08:26:53++ env
08:26:53++ sort
08:26:53Archiving artifacts
08:27:25Finished: SUCCESS
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