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2026-11-11 00:17:48,898 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-11 00:17:48,911 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:17:48,911 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-11 00:17:48,972 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-11 00:17:49,090 [     scc.git] DEBUG Updating deab817..160d894

2026-11-11 00:17:49,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 17446
2026-11-11 00:17:49,607 [     scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-11-11 00:17:50,022 [     scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-11-11 00:17:50,022 [     scc.git] DEBUG  * branch            refs/pull/22/head -> FETCH_HEAD
2026-11-11 00:17:50,042 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:17:50,042 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:17:50,042 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:17:50,053 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-11-11 00:17:50,070 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:17:50,081 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-11-11 00:17:50,214 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-11 00:17:50,260 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2026-11-11 00:17:50,260 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-11 00:17:50,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:17:50,454 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:17:50,557 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:17:50,557 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:17:50,569 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:17:50,664 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:17:50,702 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b9c435c50> has no local changes
2026-11-11 00:17:50,702 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
  - PR 20 jburel 'Build'

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:17:50,790 [     scc.git] DEBUG [detached HEAD 5414bfb] merge master -Dorg -Ssuccess-only
2026-11-11 00:17:50,791 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:17:50,791 [     scc.git] INFO  Overriding base-branch from master to main
2026-11-11 00:17:50,791 [    scc.repo] DEBUG ## PRs found:
2026-11-11 00:17:51,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-11-11 00:17:51,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-11-11 00:17:52,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-11-11 00:17:52,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-11-11 00:17:53,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-11 00:17:53,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-11-11 00:17:54,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-11-11 00:17:54,451 [    scc.repo] DEBUG   - PR 21 will-moore 'Web zarr import'
2026-11-11 00:17:54,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-11-11 00:17:55,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-11-11 00:17:55,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-11-11 00:17:56,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-11-11 00:17:57,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-11 00:17:57,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-11-11 00:17:58,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-11-11 00:17:58,152 [    scc.repo] DEBUG   - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-11-11 00:17:58,153 [    scc.repo] DEBUG ## Branches found:
2026-11-11 00:17:58,153 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-11-11 00:17:58,153 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:17:58,153 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:17:58,168 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-11-11 00:17:58,183 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:17:58,183 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-11-11 00:17:58,200 [     scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-11-11 00:17:58,305 [     scc.git] DEBUG Updating 8f3c313..4e1e685

2026-11-11 00:17:58,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 16957
2026-11-11 00:17:59,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 17011
2026-11-11 00:17:59,362 [     scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-11-11 00:17:59,900 [     scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-11-11 00:17:59,900 [     scc.git] DEBUG  * branch            refs/pull/10/head -> FETCH_HEAD
2026-11-11 00:17:59,920 [     scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-11-11 00:18:00,697 [     scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-11-11 00:18:00,698 [     scc.git] DEBUG  * branch            refs/pull/21/head -> FETCH_HEAD
2026-11-11 00:18:00,717 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:18:00,717 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:00,717 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:00,728 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-11 00:18:00,751 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:00,762 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-11 00:18:00,972 [     scc.git] DEBUG Auto-merging README.rst
2026-11-11 00:18:00,972 [     scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-11-11 00:18:00,972 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-11-11 00:18:00,972 [     scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-11-11 00:18:00,987 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-11-11 00:18:00,988 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-11-11 00:18:01,015 [     scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-11-11 00:18:01,122 [     scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-11-11 00:18:01,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:01,347 [     scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-11 00:18:01,367 [     scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-11-11 00:18:01,383 [     scc.git] INFO    - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero_web_zarr/urls.py

--conflicts

2026-11-11 00:18:01,392 [  scc.config] DEBUG Found github.token
2026-11-11 00:18:01,392 [     scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-11-11 00:18:01,392 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-11-11 00:18:01,427 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:01,438 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-11-11 00:18:01,624 [     scc.git] DEBUG Auto-merging README.rst
2026-11-11 00:18:01,624 [     scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-11-11 00:18:01,684 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-11 00:18:01,738 [     scc.git] DEBUG  README.rst                                         |   3 +
2026-11-11 00:18:01,738 [     scc.git] DEBUG  .../templates/omero_web_zarr/zarr_import.html      | 358 +++++++++++++++++++++
2026-11-11 00:18:01,738 [     scc.git] DEBUG  omero_web_zarr/urls.py                             |   2 +
2026-11-11 00:18:01,738 [     scc.git] DEBUG  omero_web_zarr/views.py                            |  43 ++-
2026-11-11 00:18:01,738 [     scc.git] DEBUG  setup.py                                           |   5 +-
2026-11-11 00:18:01,738 [     scc.git] DEBUG  5 files changed, 409 insertions(+), 2 deletions(-)
2026-11-11 00:18:01,738 [     scc.git] DEBUG  create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-11-11 00:18:02,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:02,004 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:18:02,113 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:02,113 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:02,127 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:02,224 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:02,276 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b9c4382d0> has no local changes
2026-11-11 00:18:02,276 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-web-zarr
Excluded PRs:
  - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
  - PR 23 lubianat 'Fix mix of .rst and .md on README'
  - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'

Merged PRs:
  - PR 21 will-moore 'Web zarr import'

Conflicting PRs (not included):
  - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:02,392 [     scc.git] DEBUG [detached HEAD f3fb43e] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:02,393 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:02,394 [    scc.repo] DEBUG ## PRs found:
2026-11-11 00:18:02,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-11-11 00:18:03,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-11-11 00:18:03,347 [    scc.repo] DEBUG   # ... Include label: dependencies
2026-11-11 00:18:03,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:04,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-11 00:18:05,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:05,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-11-11 00:18:05,549 [    scc.repo] DEBUG   - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:05,549 [    scc.repo] DEBUG ## Branches found:
2026-11-11 00:18:05,549 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-11-11 00:18:05,550 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:05,550 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:05,567 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-11 00:18:05,581 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:18:05,582 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-11 00:18:05,602 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-11 00:18:05,648 [     scc.git] DEBUG Already up to date.

2026-11-11 00:18:05,648 [     scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-11-11 00:18:06,048 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-11-11 00:18:06,048 [     scc.git] DEBUG  * branch            refs/pull/25/head -> FETCH_HEAD
2026-11-11 00:18:06,067 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:18:06,067 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:06,067 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:06,077 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-11-11 00:18:06,092 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:06,105 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-11-11 00:18:06,227 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-11 00:18:06,269 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2026-11-11 00:18:06,269 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-11 00:18:06,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:06,664 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:18:06,758 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:06,758 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:06,767 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:06,852 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:06,890 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7ba058b110> has no local changes
2026-11-11 00:18:06,890 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: openmicroscopy/omero-weberror
Already up to date.

Merged PRs:
  - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:06,978 [     scc.git] DEBUG [detached HEAD 70cec71] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:06,980 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:06,980 [    scc.repo] DEBUG ## PRs found:
2026-11-11 00:18:07,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-11-11 00:18:07,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-11-11 00:18:07,857 [    scc.repo] DEBUG   # ... Include label: dependencies
2026-11-11 00:18:08,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:08,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-11 00:18:09,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:10,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-11-11 00:18:10,003 [    scc.repo] DEBUG   - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:10,003 [    scc.repo] DEBUG ## Branches found:
2026-11-11 00:18:10,003 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-11-11 00:18:10,004 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:10,004 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:10,019 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-11 00:18:10,033 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:18:10,033 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-11 00:18:10,050 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-11 00:18:10,093 [     scc.git] DEBUG Already up to date.

2026-11-11 00:18:10,093 [     scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-11-11 00:18:10,490 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-11-11 00:18:10,490 [     scc.git] DEBUG  * branch            refs/pull/37/head -> FETCH_HEAD
2026-11-11 00:18:10,510 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:18:10,510 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:10,510 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:10,521 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-11-11 00:18:10,537 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:10,548 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-11-11 00:18:10,702 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-11 00:18:10,748 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2026-11-11 00:18:10,748 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-11 00:18:10,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:10,948 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:18:11,056 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:11,057 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:11,066 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:11,151 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:11,188 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b9c425590> has no local changes
2026-11-11 00:18:11,188 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: openmicroscopy/omero-webtest
Already up to date.

Merged PRs:
  - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:11,305 [     scc.git] DEBUG [detached HEAD ce118a9] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:11,307 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:11,307 [    scc.repo] DEBUG ## PRs found:
2026-11-11 00:18:11,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-11-11 00:18:11,775 [    scc.repo] DEBUG ## Branches found:
2026-11-11 00:18:11,775 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-11-11 00:18:11,776 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:11,776 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:11,792 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-11 00:18:11,807 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:18:11,807 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-11 00:18:11,826 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-11 00:18:11,875 [     scc.git] DEBUG Already up to date.

2026-11-11 00:18:11,875 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:18:11,875 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:11,875 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:11,887 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:18:11,983 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:11,983 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:11,993 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:12,089 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:12,161 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b9c425750> has no local changes
2026-11-11 00:18:12,161 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/rOMERO-gateway
Already up to date.


Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:12,261 [     scc.git] DEBUG [detached HEAD e12b4d6] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:12,263 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:12,263 [     scc.git] INFO  Overriding base-branch from master to develop
2026-11-11 00:18:12,263 [    scc.repo] DEBUG ## PRs found:
2026-11-11 00:18:12,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-11-11 00:18:13,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-11-11 00:18:13,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:14,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-11 00:18:14,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-11 00:18:15,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-11-11 00:18:15,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-11-11 00:18:15,823 [    scc.repo] DEBUG   - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-11-11 00:18:15,823 [    scc.repo] DEBUG ## Branches found:
2026-11-11 00:18:15,824 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-11-11 00:18:15,824 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:15,824 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:15,839 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-11-11 00:18:15,854 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-11 00:18:15,854 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-11-11 00:18:16,055 [     scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-11-11 00:18:16,309 [     scc.git] DEBUG Updating 4b4c755..636540e

2026-11-11 00:18:16,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/235 HTTP/1.1" 200 16917
2026-11-11 00:18:17,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 15981
2026-11-11 00:18:17,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 16955
2026-11-11 00:18:18,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 16867
2026-11-11 00:18:19,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 16558
2026-11-11 00:18:19,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 27438
2026-11-11 00:18:20,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 15967
2026-11-11 00:18:20,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 16464
2026-11-11 00:18:20,985 [     scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-11-11 00:18:21,533 [     scc.git] DEBUG From https://github.com/ome/scripts
2026-11-11 00:18:21,533 [     scc.git] DEBUG  * branch            refs/pull/232/head -> FETCH_HEAD
2026-11-11 00:18:21,555 [     scc.git] DEBUG ## Unique users: []
2026-11-11 00:18:21,556 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:21,556 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:21,567 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-11-11 00:18:21,626 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:21,665 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-11-11 00:18:22,051 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-11 00:18:22,103 [     scc.git] DEBUG  omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-11-11 00:18:22,103 [     scc.git] DEBUG  1 file changed, 24 insertions(+), 2 deletions(-)
2026-11-11 00:18:22,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:22,324 [     scc.git] DEBUG Calling 'git submodule update'
2026-11-11 00:18:22,427 [     scc.git] DEBUG Get sha1 of %s
2026-11-11 00:18:22,427 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-11 00:18:22,438 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:22,557 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:22,610 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b9c47ae10> has no local changes
2026-11-11 00:18:22,611 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/scripts
Updating 4b4c755..636540e
Previously merged:
  - PR 235 will-moore 'Batch roi export tags'
  - PR 231 jburel 'Create Release '
  - PR 229 Rdornier 'Adding support for custom user label'
  - PR 223 will-moore 'don't attempt ROI stats on big images'
  - PR 230 Rdornier 'Import from csv fix'
  - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
  - PR 227 jburel 'Replace tostring by tobytes'
  - PR 225 will-moore 'Fix param names and assertion texts in tests'

Merged PRs:
  - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:22,725 [     scc.git] DEBUG [detached HEAD 73cf151] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:22,727 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:22,727 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-11 00:18:22,961 [  scc.config] DEBUG Found submodule.figure.url
2026-11-11 00:18:23,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:23,187 [  scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-11-11 00:18:23,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:23,617 [  scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-11-11 00:18:23,623 [  scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-11-11 00:18:24,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:24,098 [  scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-11-11 00:18:24,104 [  scc.config] DEBUG Found submodule.omero-cli-render.url
2026-11-11 00:18:24,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:24,621 [  scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-11-11 00:18:24,628 [  scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-11-11 00:18:25,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:25,074 [  scc.config] DEBUG Found submodule.omero-figure.url
2026-11-11 00:18:25,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:25,528 [  scc.config] DEBUG Found submodule.omero-figure.branch
2026-11-11 00:18:25,536 [  scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-11-11 00:18:25,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:25,982 [  scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-11-11 00:18:26,003 [  scc.config] DEBUG Found submodule.omero-gallery.url
2026-11-11 00:18:26,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:26,699 [  scc.config] DEBUG Found submodule.omero-gallery.branch
2026-11-11 00:18:26,707 [  scc.config] DEBUG Found submodule.omero-iviewer.url
2026-11-11 00:18:26,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:26,982 [  scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-11-11 00:18:26,989 [  scc.config] DEBUG Found submodule.omero-mapr.url
2026-11-11 00:18:27,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:27,443 [  scc.config] DEBUG Found submodule.omero-mapr.branch
2026-11-11 00:18:27,450 [  scc.config] DEBUG Found submodule.omero-metadata.url
2026-11-11 00:18:27,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:27,898 [  scc.config] DEBUG Found submodule.omero-metadata.branch
2026-11-11 00:18:27,905 [  scc.config] DEBUG Found submodule.omero-parade.url
2026-11-11 00:18:28,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:28,380 [  scc.config] DEBUG Found submodule.omero-parade.branch
2026-11-11 00:18:28,386 [  scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-11-11 00:18:28,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:28,872 [  scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-11-11 00:18:28,878 [  scc.config] DEBUG Found submodule.omero-rois.url
2026-11-11 00:18:29,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:29,384 [  scc.config] DEBUG Found submodule.omero-signup.url
2026-11-11 00:18:29,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:29,843 [  scc.config] DEBUG Found submodule.omero-test-infra.url
2026-11-11 00:18:30,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:30,295 [  scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-11-11 00:18:30,301 [  scc.config] DEBUG Found submodule.omero-upload.url
2026-11-11 00:18:30,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:30,783 [  scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-11-11 00:18:31,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:31,240 [  scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-11-11 00:18:31,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:31,735 [  scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-11-11 00:18:31,742 [  scc.config] DEBUG Found submodule.omero-weberror.url
2026-11-11 00:18:32,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:32,177 [  scc.config] DEBUG Found submodule.omero-weberror.branch
2026-11-11 00:18:32,184 [  scc.config] DEBUG Found submodule.omero-webtest.url
2026-11-11 00:18:32,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:32,634 [  scc.config] DEBUG Found submodule.omero-webtest.branch
2026-11-11 00:18:32,641 [  scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-11-11 00:18:33,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:33,090 [  scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-11-11 00:18:33,099 [  scc.config] DEBUG Found submodule.scripts.url
2026-11-11 00:18:33,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-11 00:18:33,556 [  scc.config] DEBUG Found submodule.scripts.branch
2026-11-11 00:18:33,556 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-11-11 00:18:35,037 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f7ba3656950> has local changes
2026-11-11 00:18:35,037 [     scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-plugins
Already up to date.

Merged PRs:
  - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
  - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
  - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'

Repository: ome/figure
Excluded PRs:
  - PR 12 will-moore 'Browser based export' (exclude comment)
  - PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..48591c0
Previously merged:
  - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
  - PR 24 Tom-TBT 'Label selection timeout & blur fix'
  - PR 20 will-moore 'Hide export dropdown unless omero'
  - PR 19 Rdornier 'Fix rectangle crop'
  - PR 14 will-moore 'App served by omero env'
  - PR 17 Rdornier 'Do not crop rotated panel at export'
  - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'

Merged PRs:
  - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
  - PR 26 will-moore 'Remove python script'
  - PR 30 will-moore 'License to BSD'

Repository: ome/minimal-omero-client
Already up to date.


Repository: ome/omero-cli-duplicate
Excluded PRs:
  - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.

Merged PRs:
  - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-cli-render
Excluded PRs:
  - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
  - PR 74 jburel 'Replace manual changelog by automated GH release step'
  - PR 75 jburel 'Sort the new channels to ensure settings are set'
  - PR 71 dominikl 'Escape slash character in image names'
  - PR 69 dominikl 'Fix help text for impo/export commands'

Merged PRs:
  - PR 59 will-moore 'Apply settings to Plate'

Repository: ome/omero-cli-zarr
Excluded PRs:
  - PR 166 will-moore 'Downsample scale option' (stage: draft)
  - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
  - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
  - PR 193 dominikl 'Only parse import uris if stated'
  - PR 182 will-moore 'Revert "Remove support for Plate import"'
  - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
  - PR 197 pwalczysko 'Fix pragma'
  - PR 196 will-moore 'Storage options only if needed'
  - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
  - PR 192 jburel 'Set Omero pixel size'
  - PR 186 jburel 'Create release from tag'
  - PR 187 dominikl 'Fix target-by-name option'
  - PR 180 will-moore 'Import command'
  - PR 179 will-moore 'Changelog 0.6.0'
  - PR 177 jburel 'Replace fromstring by frombuffer'
  - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
  - PR 147 will-moore 'Name option'
  - PR 173 will-moore 'Add test_export_plate_polygons()'
  - PR 171 will-moore 'Initial addition of integration tests'
  - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Conflicting PRs (not included):
  - PR 174 will-moore 'Skip wells'
  - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'

Repository: ome/omero-figure
Excluded PRs:
  - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier)
  - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure)
Updating 9cc36cde..3195c3df
Previously merged:
  - PR 704 jburel 'Revert commit 49ae9c9'
  - PR 703 will-moore 'Readme remove rc'
  - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
  - PR 692 will-moore 'colorbar lut background fix'
  - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
  - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
  - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
  - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
  - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
  - PR 691 dependabot[bot] 'Bump esbuild and vite'
  - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
  - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
  - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
  - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
  - PR 685 will-moore 'Fix static files links for release build'
  - PR 683 will-moore 'Add touch support for clicking on single panel'
  - PR 680 will-moore 'Use --pre install for export script in README'
  - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
  - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
  - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
  - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
  - PR 666 will-moore 'Standalone app'
  - PR 676 dependabot[bot] 'Bump picomatch'
  - PR 669 will-moore 'Standalone python script'
  - PR 662 will-moore 'Export script handles OME-zarr images'
  - PR 663 will-moore 'Zarr'
  - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
  - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
  - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
  - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
  - PR 667 Tom-TBT 'Label suggestion interface'
  - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
  - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
  - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
  - PR 664 Nirkan 'Handle many channels '
  - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
  - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
  - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
  - PR 649 jburel 'Replace manual changelog by automated GH release step'
  - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
  - PR 637 Rdornier 'Fix scalebar position'
  - PR 600 Rdornier 'Label on rois'
  - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
  - PR 651 Rdornier 'More compliant align to grid'
  - PR 650 jburel 'Bump Python version'
  - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
  - PR 610 will-moore 'Add docs/contributing.rst'
  - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
  - PR 646 JensWendt 'fix word wrap of image names'
  - PR 612 will-moore 'Script version'
  - PR 630 will-moore 'Fix color and position for ALL new panel insets'
  - PR 616 Rdornier 'Fix labels around border'
  - PR 605 Tom-TBT 'Colorbar feature'
  - PR 638 Rdornier 'Fix arrow opacity'
  - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
  - PR 635 dependabot[bot] 'Bump esbuild and vite'
  - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
  - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 706 will-moore 'Figure repo migration'
  - PR 714 Rdornier 'Fix scalebar label'

Conflicting PRs (not included):
  - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
  - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17'

Repository: ome/omero-fpbioimage
Already up to date.

Merged PRs:
  - PR 18 jburel 'default  size z value'
  - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-gallery
Already up to date.

Merged PRs:
  - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
  - PR 114 dependabot[bot] 'Bump tar and fsevents'
  - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
  - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'

Conflicting PRs (not included):
  - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
  - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
  - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'

Repository: ome/omero-iviewer
Excluded PRs:
  - PR 420 will-moore 'Add release process to README' (exclude comment)
  - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..106ca787
Previously merged:
  - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4'
  - PR 585 dependabot[bot] 'Bump body-parser'
  - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2'
  - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3'
  - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5'
  - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9'
  - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2'
  - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
  - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
  - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
  - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
  - PR 497 will-moore 'ROI Tags'
  - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
  - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
  - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
  - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
  - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
  - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
  - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
  - PR 565 dependabot[bot] 'Bump qs and body-parser'
  - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
  - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
  - PR 562 will-moore 'Keyboard select roi'
  - PR 563 will-moore 'Use POST data for imgRdef save'
  - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
  - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
  - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
  - PR 541 will-moore 'Only add channel to tile request string if active'
  - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
  - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
  - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
  - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
  - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
  - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
  - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
  - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
  - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
  - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
  - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
  - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
  - PR 535 dependabot[bot] 'Bump tmp and eslint'
  - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
  - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
  - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
  - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
  - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
  - PR 529 will-moore 'Image id and roi id initial params'
  - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
  - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
  - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
  - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
  - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
  - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
  - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
  - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
  - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
  - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
  - PR 513 jburel 'Bump Python version'
  - PR 512 jburel 'Replace manual changelog by automated GH release step'
  - PR 465 will-moore 'Save as Figure'
  - PR 517 will-moore 'Fix roi link permissions'
  - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
  - PR 510 joshmoore 'Re-enable omero-test-infra'
  - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 471 will-moore 'Z projection disabled tooltip'
  - PR 587 will-moore 'Roi columns add remove'

Conflicting PRs (not included):
  - PR 532 will-moore 'Zarr layers'

Repository: ome/omero-mapr
Excluded PRs:
  - PR 79 will-moore 'Right panel title' (exclude comment)
  - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.

Merged PRs:
  - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
  - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
  - PR 98 JoshuaFortriede 'use namespace with keys'

Conflicting PRs (not included):
  - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
  - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
  - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
  - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 92 dominikl 'add resolve_rois to projectwrapper'

Conflicting PRs (not included):
  - PR 64 will-moore 'Support images_by_name for Screen and Plate'

Repository: ome/omero-parade
Excluded PRs:
  - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
  - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
  - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
  - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.

Merged PRs:
  - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
  - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
  - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Repository: ome/omero-prometheus-tools
Already up to date.

Merged PRs:
  - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-rois
Excluded PRs:
  - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
  - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
  - PR 35 will-moore 'Add roi to array functions'


Repository: ome/omero-signup
Updating be76813..5a64360
Previously merged:
  - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo'
  - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows'

Conflicting PRs (not included):
  - PR 14 manics 'Add pre-commit (black, flake8)'

Repository: openmicroscopy/omero-test-infra
Excluded PRs:
  - PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
  - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
  - PR 82 jburel 'Upgrade python'
  - PR 81 erickmartins 'add ulimits to omero-server container'

Merged PRs:
  - PR 74 joshmoore 'Add 'ms' target for ./docker'

Repository: ome/omero-upload
Already up to date.

Merged PRs:
  - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
  - PR 20 jburel 'Build'

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-web-zarr
Excluded PRs:
  - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
  - PR 23 lubianat 'Fix mix of .rst and .md on README'
  - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'

Merged PRs:
  - PR 21 will-moore 'Web zarr import'

Conflicting PRs (not included):
  - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'

Repository: openmicroscopy/omero-weberror
Already up to date.

Merged PRs:
  - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: openmicroscopy/omero-webtest
Already up to date.

Merged PRs:
  - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/rOMERO-gateway
Already up to date.


Repository: ome/scripts
Updating 4b4c755..636540e
Previously merged:
  - PR 235 will-moore 'Batch roi export tags'
  - PR 231 jburel 'Create Release '
  - PR 229 Rdornier 'Adding support for custom user label'
  - PR 223 will-moore 'don't attempt ROI stats on big images'
  - PR 230 Rdornier 'Import from csv fix'
  - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
  - PR 227 jburel 'Replace tostring by tobytes'
  - PR 225 will-moore 'Fix param names and assertion texts in tests'

Merged PRs:
  - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'

Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-11-11 00:18:35,534 [     scc.git] DEBUG [detached HEAD 09486ec] merge master -Dorg -Ssuccess-only
2026-11-11 00:18:35,534 [     scc.git] DEBUG  24 files changed, 46 insertions(+), 46 deletions(-)
2026-11-11 00:18:35,536 [   scc.merge] INFO  Repository: ome/omero-plugins
2026-11-11 00:18:35,536 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Repository: ome/figure
2026-11-11 00:18:35,536 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 12 will-moore 'Browser based export' (exclude comment)
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 9 will-moore 'Save omezarr collection' (stage: draft)
2026-11-11 00:18:35,536 [   scc.merge] INFO  Updating 3935875..48591c0
2026-11-11 00:18:35,536 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 24 Tom-TBT 'Label selection timeout & blur fix'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 20 will-moore 'Hide export dropdown unless omero'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 19 Rdornier 'Fix rectangle crop'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 14 will-moore 'App served by omero env'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 17 Rdornier 'Do not crop rotated panel at export'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 26 will-moore 'Remove python script'
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 30 will-moore 'License to BSD'
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Repository: ome/minimal-omero-client
2026-11-11 00:18:35,536 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Repository: ome/omero-cli-duplicate
2026-11-11 00:18:35,536 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-11-11 00:18:35,536 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,536 [   scc.merge] INFO  
2026-11-11 00:18:35,536 [   scc.merge] INFO  Repository: ome/omero-cli-render
2026-11-11 00:18:35,536 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,536 [   scc.merge] INFO    - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-11-11 00:18:35,536 [   scc.merge] INFO  Updating ce6e13c..68b7303
2026-11-11 00:18:35,536 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 71 dominikl 'Escape slash character in image names'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 69 dominikl 'Fix help text for impo/export commands'
2026-11-11 00:18:35,537 [   scc.merge] INFO  
2026-11-11 00:18:35,537 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 59 will-moore 'Apply settings to Plate'
2026-11-11 00:18:35,537 [   scc.merge] INFO  
2026-11-11 00:18:35,537 [   scc.merge] INFO  Repository: ome/omero-cli-zarr
2026-11-11 00:18:35,537 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-11-11 00:18:35,537 [   scc.merge] INFO  Updating 11d3587..d5f88d8
2026-11-11 00:18:35,537 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 193 dominikl 'Only parse import uris if stated'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 197 pwalczysko 'Fix pragma'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 196 will-moore 'Storage options only if needed'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 192 jburel 'Set Omero pixel size'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 186 jburel 'Create release from tag'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 187 dominikl 'Fix target-by-name option'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 180 will-moore 'Import command'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 179 will-moore 'Changelog 0.6.0'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 177 jburel 'Replace fromstring by frombuffer'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 147 will-moore 'Name option'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 171 will-moore 'Initial addition of integration tests'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,537 [   scc.merge] INFO  
2026-11-11 00:18:35,537 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 174 will-moore 'Skip wells'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-11-11 00:18:35,537 [   scc.merge] INFO  
2026-11-11 00:18:35,537 [   scc.merge] INFO  Repository: ome/omero-figure
2026-11-11 00:18:35,537 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier)
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure)
2026-11-11 00:18:35,537 [   scc.merge] INFO  Updating 9cc36cde..3195c3df
2026-11-11 00:18:35,537 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 704 jburel 'Revert commit 49ae9c9'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 703 will-moore 'Readme remove rc'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 692 will-moore 'colorbar lut background fix'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 685 will-moore 'Fix static files links for release build'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 680 will-moore 'Use --pre install for export script in README'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 666 will-moore 'Standalone app'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 676 dependabot[bot] 'Bump picomatch'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 669 will-moore 'Standalone python script'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 662 will-moore 'Export script handles OME-zarr images'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 663 will-moore 'Zarr'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-11-11 00:18:35,537 [   scc.merge] INFO    - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 667 Tom-TBT 'Label suggestion interface'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 664 Nirkan 'Handle many channels '
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 637 Rdornier 'Fix scalebar position'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 600 Rdornier 'Label on rois'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 651 Rdornier 'More compliant align to grid'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 650 jburel 'Bump Python version'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 610 will-moore 'Add docs/contributing.rst'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 646 JensWendt 'fix word wrap of image names'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 612 will-moore 'Script version'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 616 Rdornier 'Fix labels around border'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 605 Tom-TBT 'Colorbar feature'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 638 Rdornier 'Fix arrow opacity'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 706 will-moore 'Figure repo migration'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 714 Rdornier 'Fix scalebar label'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Repository: ome/omero-fpbioimage
2026-11-11 00:18:35,538 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 18 jburel 'default  size z value'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Repository: ome/omero-gallery
2026-11-11 00:18:35,538 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-11-11 00:18:35,538 [   scc.merge] INFO  
2026-11-11 00:18:35,538 [   scc.merge] INFO  Repository: ome/omero-iviewer
2026-11-11 00:18:35,538 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-11-11 00:18:35,538 [   scc.merge] INFO  Updating 7a798cee..106ca787
2026-11-11 00:18:35,538 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4'
2026-11-11 00:18:35,538 [   scc.merge] INFO    - PR 585 dependabot[bot] 'Bump body-parser'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 497 will-moore 'ROI Tags'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 562 will-moore 'Keyboard select roi'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 563 will-moore 'Use POST data for imgRdef save'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 541 will-moore 'Only add channel to tile request string if active'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 529 will-moore 'Image id and roi id initial params'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 513 jburel 'Bump Python version'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 465 will-moore 'Save as Figure'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 517 will-moore 'Fix roi link permissions'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,539 [   scc.merge] INFO  
2026-11-11 00:18:35,539 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 471 will-moore 'Z projection disabled tooltip'
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 587 will-moore 'Roi columns add remove'
2026-11-11 00:18:35,539 [   scc.merge] INFO  
2026-11-11 00:18:35,539 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,539 [   scc.merge] INFO    - PR 532 will-moore 'Zarr layers'
2026-11-11 00:18:35,539 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-mapr
2026-11-11 00:18:35,540 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 79 will-moore 'Right panel title' (exclude comment)
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-11-11 00:18:35,540 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 98 JoshuaFortriede 'use namespace with keys'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-metadata
2026-11-11 00:18:35,540 [   scc.merge] INFO  Updating 3cd120c..6a653e4
2026-11-11 00:18:35,540 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-parade
2026-11-11 00:18:35,540 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-11-11 00:18:35,540 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-prometheus-tools
2026-11-11 00:18:35,540 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-rois
2026-11-11 00:18:35,540 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-11-11 00:18:35,540 [   scc.merge] INFO  Updating bdfeb5e..fc9ff96
2026-11-11 00:18:35,540 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 35 will-moore 'Add roi to array functions'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: ome/omero-signup
2026-11-11 00:18:35,540 [   scc.merge] INFO  Updating be76813..5a64360
2026-11-11 00:18:35,540 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo'
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 14 manics 'Add pre-commit (black, flake8)'
2026-11-11 00:18:35,540 [   scc.merge] INFO  
2026-11-11 00:18:35,540 [   scc.merge] INFO  Repository: openmicroscopy/omero-test-infra
2026-11-11 00:18:35,540 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-11-11 00:18:35,540 [   scc.merge] INFO  Updating cda3ec6..c8a0015
2026-11-11 00:18:35,540 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,540 [   scc.merge] INFO    - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 82 jburel 'Upgrade python'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 81 erickmartins 'add ulimits to omero-server container'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: ome/omero-upload
2026-11-11 00:18:35,541 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: ome/omero-virtual-microscope
2026-11-11 00:18:35,541 [   scc.merge] INFO  Updating deab817..160d894
2026-11-11 00:18:35,541 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 20 jburel 'Build'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: ome/omero-web-zarr
2026-11-11 00:18:35,541 [   scc.merge] INFO  Excluded PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-11-11 00:18:35,541 [   scc.merge] INFO  Updating 8f3c313..4e1e685
2026-11-11 00:18:35,541 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 21 will-moore 'Web zarr import'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Conflicting PRs (not included):
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: openmicroscopy/omero-weberror
2026-11-11 00:18:35,541 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: openmicroscopy/omero-webtest
2026-11-11 00:18:35,541 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: ome/rOMERO-gateway
2026-11-11 00:18:35,541 [   scc.merge] INFO  Already up to date.
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Repository: ome/scripts
2026-11-11 00:18:35,541 [   scc.merge] INFO  Updating 4b4c755..636540e
2026-11-11 00:18:35,541 [   scc.merge] INFO  Previously merged:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 235 will-moore 'Batch roi export tags'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 231 jburel 'Create Release '
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 229 Rdornier 'Adding support for custom user label'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 230 Rdornier 'Import from csv fix'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 227 jburel 'Replace tostring by tobytes'
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] INFO  Merged PRs:
2026-11-11 00:18:35,541 [   scc.merge] INFO    - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-11-11 00:18:35,541 [   scc.merge] INFO  
2026-11-11 00:18:35,541 [   scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-11 00:18:35,541 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,572 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-11-11 00:18:35,572 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,584 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,584 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-11-11 00:18:35,584 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,595 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,595 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-11-11 00:18:35,595 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,608 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,608 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-11-11 00:18:35,608 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,624 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,624 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-11-11 00:18:35,624 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,635 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,635 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-11-11 00:18:35,635 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,648 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,648 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-11-11 00:18:35,649 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,659 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,659 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-11-11 00:18:35,659 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,672 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,672 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-11-11 00:18:35,673 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,683 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,683 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-11-11 00:18:35,684 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,696 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,696 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-11-11 00:18:35,696 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,707 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,707 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-11-11 00:18:35,707 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,718 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,718 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-11-11 00:18:35,718 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,729 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,729 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-11-11 00:18:35,729 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,741 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,741 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-11-11 00:18:35,741 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,752 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,752 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-11-11 00:18:35,752 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,764 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,764 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-11-11 00:18:35,764 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,775 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,775 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-11-11 00:18:35,776 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,788 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,788 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-11-11 00:18:35,788 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,799 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,799 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-11-11 00:18:35,800 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,810 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,810 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-11-11 00:18:35,810 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,832 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,832 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-11-11 00:18:35,832 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,844 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-11 00:18:35,844 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-11-11 00:18:35,845 [     scc.git] DEBUG Calling 'git remote'
2026-11-11 00:18:35,857 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-cli-duplicate).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-cli-duplicate).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-cli-render).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-cli-render).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0'
  self.metadata.version = self._normalize_version(self.metadata.version)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-fpbioimage).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0'
  self.metadata.version = self._normalize_version(self.metadata.version)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-fpbioimage).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-gallery).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-gallery).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-mapr).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-mapr).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!

        ********************************************************************************
        Please remove any references to `setuptools.command.test` in all supported versions of the affected package.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        ********************************************************************************

!!
  from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!

        ********************************************************************************
        Please remove any references to `setuptools.command.test` in all supported versions of the affected package.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        ********************************************************************************

!!
  from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-signup).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-signup).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!

        ********************************************************************************
        Please remove any references to `setuptools.command.test` in all supported versions of the affected package.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        ********************************************************************************

!!
  from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!

        ********************************************************************************
        Please remove any references to `setuptools.command.test` in all supported versions of the affected package.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        ********************************************************************************

!!
  from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-weberror).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-weberror).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-webtest).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: omero-webtest).

        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
grep: build.gradle: No such file or directory
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Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'figure'
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'figure'
HEAD detached from 3935875
nothing to commit, working tree clean
Entering 'minimal-omero-client'
[detached HEAD 4ae1467] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
  (use "git add <file>..." to include in what will be committed)
	.eggs/

nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798cee
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD abcfd5c] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-11-11 00:19:38,896 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-11-11 00:19:49,582 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-11-11 00:19:52,387 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-11-11 00:19:57,908 [github.Reque] INFO  Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-11-11 00:21:04,205 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS