Skipping 193 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2026-01-13 00:40:18,507 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:40:18,511 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad738344d0> has no local changes
2026-01-13 00:40:18,511 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:40:18,517 [ scc.git] DEBUG [detached HEAD 6238e88] merge master -Dorg -Ssuccess-only
2026-01-13 00:40:18,517 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:40:18,518 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:40:18,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-01-13 00:40:19,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-01-13 00:40:19,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-01-13 00:40:19,948 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:40:20,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-13 00:40:21,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:21,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:40:22,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-13 00:40:22,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:22,521 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:40:22,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-13 00:40:23,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-13 00:40:23,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:24,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-13 00:40:25,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:25,074 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:40:25,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-13 00:40:26,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-13 00:40:26,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-13 00:40:27,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:27,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-13 00:40:28,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:28,144 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-13 00:40:28,144 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:40:28,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-13 00:40:28,144 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:28,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:28,147 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:40:28,149 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:40:28,149 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:40:28,152 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:40:28,155 [ scc.git] DEBUG Already up to date.
2026-01-13 00:40:28,155 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-13 00:40:28,426 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-13 00:40:28,426 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-13 00:40:28,431 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-13 00:40:28,700 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-13 00:40:28,701 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-13 00:40:28,704 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-13 00:40:28,961 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-13 00:40:28,962 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-13 00:40:28,965 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:40:28,966 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:28,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:28,968 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-13 00:40:28,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:28,973 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-13 00:40:28,981 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:40:28,984 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-13 00:40:28,984 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-13 00:40:28,984 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-13 00:40:28,984 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-13 00:40:28,984 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-13 00:40:28,984 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-13 00:40:29,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:29,136 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-13 00:40:29,139 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:29,141 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-13 00:40:29,149 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:40:29,151 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:40:29,151 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:40:29,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:29,681 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-13 00:40:29,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:29,687 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-13 00:40:29,693 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-13 00:40:29,694 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-13 00:40:29,694 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-13 00:40:29,694 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-13 00:40:29,697 [ scc.git] DEBUG Calling 'git reset --hard bfbf603779d9a4a1cb985a6925e3896dc1d29fd9'
2026-01-13 00:40:29,700 [ scc.git] DEBUG HEAD is now at bfbf603 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-13 00:40:30,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:30,076 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-13 00:40:30,079 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-13 00:40:30,081 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#18](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-13 00:40:30,083 [ scc.config] DEBUG Found github.token
2026-01-13 00:40:30,083 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-13 00:40:30,083 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:40:30,121 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:30,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:30,123 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:40:30,160 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:40:30,164 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad70630b50> has no local changes
2026-01-13 00:40:30,164 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:40:30,170 [ scc.git] DEBUG [detached HEAD 614e812] merge master -Dorg -Ssuccess-only
2026-01-13 00:40:30,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:40:30,170 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:40:30,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-13 00:40:31,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-13 00:40:31,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-13 00:40:37,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-13 00:40:37,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:38,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-13 00:40:38,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:38,472 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-13 00:40:38,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-13 00:40:39,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-13 00:40:39,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-13 00:40:40,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:41,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-13 00:40:41,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:41,539 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-13 00:40:41,539 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:40:41,539 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-13 00:40:41,539 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:41,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:41,542 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:40:41,544 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:40:41,544 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:40:41,547 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:40:41,553 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-13 00:40:42,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-13 00:40:42,206 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-13 00:40:42,488 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-13 00:40:42,488 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-13 00:40:42,492 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-13 00:40:42,756 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-13 00:40:42,756 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-13 00:40:42,761 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:40:42,761 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:42,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:42,763 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-13 00:40:42,767 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:42,769 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-13 00:40:42,781 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-13 00:40:42,781 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-13 00:40:42,781 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-13 00:40:42,781 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-13 00:40:42,781 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-13 00:40:42,782 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-13 00:40:42,784 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-13 00:40:42,788 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-13 00:40:42,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:42,944 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-13 00:40:42,947 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-13 00:40:42,950 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#18](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-01-13 00:40:42,952 [ scc.config] DEBUG Found github.token
2026-01-13 00:40:42,952 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-13 00:40:42,952 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-13 00:40:42,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:42,958 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-13 00:40:42,972 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-13 00:40:42,972 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-13 00:40:42,972 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-13 00:40:42,972 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-13 00:40:42,972 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-13 00:40:42,975 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-13 00:40:42,979 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-13 00:40:43,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:43,354 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-13 00:40:43,358 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-13 00:40:43,361 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#18](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-13 00:40:43,363 [ scc.config] DEBUG Found github.token
2026-01-13 00:40:43,363 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-13 00:40:43,363 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:40:43,400 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:43,400 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:43,402 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:40:43,438 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:40:43,441 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad737f6f90> has no local changes
2026-01-13 00:40:43,442 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:40:43,447 [ scc.git] DEBUG [detached HEAD b93d0c4] merge master -Dorg -Ssuccess-only
2026-01-13 00:40:43,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:40:43,447 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:40:43,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-13 00:40:44,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-13 00:40:44,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-13 00:40:45,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:45,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:40:46,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-13 00:40:46,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:46,909 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:40:47,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-13 00:40:47,422 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:40:47,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-13 00:40:48,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:49,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:40:49,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-13 00:40:49,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:49,997 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-13 00:40:50,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-13 00:40:50,497 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:40:51,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-13 00:40:51,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:40:52,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:40:52,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-13 00:40:53,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:40:53,076 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-13 00:40:53,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-13 00:40:54,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-13 00:40:54,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-13 00:40:54,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-13 00:40:55,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-13 00:40:55,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-13 00:40:56,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-13 00:40:56,406 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:40:56,406 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-13 00:40:56,406 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:56,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:56,408 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:40:56,411 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:40:56,411 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:40:56,413 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:40:56,416 [ scc.git] DEBUG Already up to date.
2026-01-13 00:40:56,416 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-13 00:40:56,693 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-13 00:40:56,693 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-13 00:40:56,698 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-13 00:40:56,952 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-13 00:40:56,952 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-13 00:40:56,956 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-13 00:40:57,214 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-13 00:40:57,214 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-13 00:40:57,219 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:40:57,219 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:57,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:57,222 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-13 00:40:57,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:57,226 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-13 00:40:57,233 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:40:57,237 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-13 00:40:57,237 [ scc.git] DEBUG package.json | 2 +-
2026-01-13 00:40:57,237 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-13 00:40:57,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:57,382 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-13 00:40:57,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:57,387 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-13 00:40:57,395 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-13 00:40:57,395 [ scc.git] DEBUG Auto-merging package.json
2026-01-13 00:40:57,396 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:40:57,399 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-13 00:40:57,399 [ scc.git] DEBUG package.json | 2 +-
2026-01-13 00:40:57,399 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-13 00:40:57,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:57,781 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-13 00:40:57,783 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:57,786 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-13 00:40:57,793 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:40:57,796 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:40:57,796 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:40:58,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:40:58,173 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:40:58,210 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:40:58,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:40:58,213 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:40:58,249 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:40:58,252 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad70629c50> has no local changes
2026-01-13 00:40:58,252 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:40:58,258 [ scc.git] DEBUG [detached HEAD 06de805] merge master -Dorg -Ssuccess-only
2026-01-13 00:40:58,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:40:58,258 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:40:58,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-13 00:40:59,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-13 00:40:59,149 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:40:59,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-13 00:41:00,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:00,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:01,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-13 00:41:01,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:01,770 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:01,770 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:01,770 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-13 00:41:01,770 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:01,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:01,772 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:01,775 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:01,775 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:01,777 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:01,780 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:01,780 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-13 00:41:02,076 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-13 00:41:02,076 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-13 00:41:02,080 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:02,080 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:02,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:02,082 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-13 00:41:02,085 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:02,087 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-13 00:41:02,093 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:02,095 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:02,095 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:02,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:02,234 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:02,271 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:02,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:02,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:02,309 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:02,312 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad7384b6d0> has no local changes
2026-01-13 00:41:02,312 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:02,318 [ scc.git] DEBUG [detached HEAD 913a4a9] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:02,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:02,318 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:02,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-13 00:41:03,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-13 00:41:03,279 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:03,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-13 00:41:04,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:04,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:05,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-13 00:41:05,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:06,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-13 00:41:06,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-13 00:41:06,888 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:07,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-13 00:41:07,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-13 00:41:08,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-13 00:41:08,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:09,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:09,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-13 00:41:10,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:10,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-13 00:41:11,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-13 00:41:11,180 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-13 00:41:11,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-13 00:41:11,668 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:11,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-13 00:41:11,669 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:11,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:11,671 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:11,674 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:11,674 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:11,676 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:11,679 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:11,679 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-13 00:41:11,951 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-13 00:41:11,951 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-13 00:41:11,955 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-13 00:41:12,210 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-13 00:41:12,210 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-13 00:41:12,214 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:12,214 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:12,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:12,216 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-13 00:41:12,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:12,221 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-13 00:41:12,227 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:12,230 [ scc.git] DEBUG setup.py | 4 +-
2026-01-13 00:41:12,230 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-13 00:41:12,230 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-13 00:41:12,230 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-13 00:41:12,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:12,371 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-13 00:41:12,373 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:12,376 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-13 00:41:12,382 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:12,384 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:12,384 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:12,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:12,757 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:12,794 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:12,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:12,796 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:12,832 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:12,835 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad73836810> has no local changes
2026-01-13 00:41:12,835 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:12,841 [ scc.git] DEBUG [detached HEAD fcf59c6] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:12,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:12,841 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:13,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-13 00:41:13,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-13 00:41:13,844 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:14,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-13 00:41:14,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:15,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:16,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-13 00:41:16,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:16,466 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:16,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-13 00:41:17,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-13 00:41:18,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-13 00:41:18,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:19,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-13 00:41:19,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:19,473 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-13 00:41:19,474 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:19,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-13 00:41:19,474 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:19,474 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:19,476 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:19,479 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:19,479 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:19,481 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:19,484 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:19,484 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-13 00:41:19,765 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-13 00:41:19,765 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-13 00:41:19,769 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-13 00:41:20,023 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-13 00:41:20,023 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-13 00:41:20,027 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:20,027 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:20,027 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:20,029 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-13 00:41:20,032 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:20,034 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-13 00:41:20,041 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-13 00:41:20,041 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG Auto-merging setup.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-13 00:41:20,042 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-13 00:41:20,042 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-13 00:41:20,044 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-13 00:41:20,048 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-13 00:41:20,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:20,199 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-13 00:41:20,202 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-13 00:41:20,205 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#18](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
--conflicts
2026-01-13 00:41:20,207 [ scc.config] DEBUG Found github.token
2026-01-13 00:41:20,207 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-13 00:41:20,207 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-13 00:41:20,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:20,212 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-13 00:41:20,218 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:20,221 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:20,221 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:20,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:20,587 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:20,623 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:20,623 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:20,625 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:20,662 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:20,666 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad70652c50> has no local changes
2026-01-13 00:41:20,666 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:20,672 [ scc.git] DEBUG [detached HEAD f490967] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:20,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:20,673 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:21,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-13 00:41:21,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-13 00:41:22,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-13 00:41:22,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-13 00:41:23,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-13 00:41:23,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:24,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:24,091 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:24,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-13 00:41:24,091 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:24,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:24,094 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:24,096 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:24,096 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:24,099 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:24,106 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-13 00:41:24,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-13 00:41:25,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-13 00:41:26,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-13 00:41:26,220 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:26,220 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:26,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:26,222 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:26,260 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:26,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:26,262 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:26,298 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:26,301 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad73835250> has no local changes
2026-01-13 00:41:26,301 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:26,307 [ scc.git] DEBUG [detached HEAD 5fdd98d] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:26,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:26,307 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:26,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-13 00:41:27,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-13 00:41:27,193 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:27,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-13 00:41:28,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:28,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:29,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-13 00:41:29,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:29,747 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:29,747 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:29,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-13 00:41:29,747 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:29,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:29,750 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:29,752 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:29,752 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:29,755 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:29,757 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:29,758 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-13 00:41:30,045 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-13 00:41:30,046 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-13 00:41:30,050 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:30,050 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:30,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:30,052 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-13 00:41:30,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:30,057 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-13 00:41:30,063 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:30,065 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:30,065 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:30,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:30,213 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:30,250 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:30,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:30,253 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:30,288 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:30,291 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad7068e250> has no local changes
2026-01-13 00:41:30,291 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:30,297 [ scc.git] DEBUG [detached HEAD e4f4165] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:30,297 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:30,297 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:30,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-13 00:41:31,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-13 00:41:31,242 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:32,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-13 00:41:32,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:33,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:33,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-13 00:41:34,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:34,058 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:34,058 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:34,058 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-13 00:41:34,058 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:34,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:34,061 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:34,063 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:34,063 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:34,066 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:34,072 [ scc.git] DEBUG Updating deab817..160d894
2026-01-13 00:41:34,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-13 00:41:34,771 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-13 00:41:35,049 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-13 00:41:35,049 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-13 00:41:35,053 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:35,053 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:35,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:35,055 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-13 00:41:35,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:35,060 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-13 00:41:35,066 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:35,069 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:35,069 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:35,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:35,226 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:35,262 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:35,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:35,265 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:35,303 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:35,305 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad706cac10> has no local changes
2026-01-13 00:41:35,306 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:35,311 [ scc.git] DEBUG [detached HEAD 321d757] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:35,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:35,311 [ scc.git] INFO Overriding base-branch from master to main
2026-01-13 00:41:35,311 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:35,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-13 00:41:36,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-13 00:41:36,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-13 00:41:37,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-13 00:41:37,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:38,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:38,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-13 00:41:39,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:39,081 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-13 00:41:39,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-13 00:41:40,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-13 00:41:40,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-13 00:41:41,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-13 00:41:41,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:42,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-13 00:41:42,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:42,550 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-13 00:41:42,550 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:42,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-13 00:41:42,550 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:42,550 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:42,553 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-13 00:41:42,555 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:42,555 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-13 00:41:42,558 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-13 00:41:42,565 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-13 00:41:43,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-13 00:41:44,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-13 00:41:44,092 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-13 00:41:44,357 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-13 00:41:44,357 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-13 00:41:44,361 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-13 00:41:44,621 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-13 00:41:44,622 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-13 00:41:44,625 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:44,625 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:44,625 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:44,627 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-13 00:41:44,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:44,632 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-13 00:41:44,640 [ scc.git] DEBUG Auto-merging README.rst
2026-01-13 00:41:44,640 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-13 00:41:44,640 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-13 00:41:44,640 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-13 00:41:44,640 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-13 00:41:44,640 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-13 00:41:44,643 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-13 00:41:44,646 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-13 00:41:44,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:44,804 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-13 00:41:44,806 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-13 00:41:44,808 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#18](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-13 00:41:44,810 [ scc.config] DEBUG Found github.token
2026-01-13 00:41:44,810 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-13 00:41:44,810 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-13 00:41:44,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:44,815 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-13 00:41:44,822 [ scc.git] DEBUG Auto-merging README.rst
2026-01-13 00:41:44,822 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-13 00:41:44,823 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:44,826 [ scc.git] DEBUG README.rst | 3 +
2026-01-13 00:41:44,826 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-13 00:41:44,826 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-13 00:41:44,826 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-13 00:41:44,826 [ scc.git] DEBUG setup.py | 5 +-
2026-01-13 00:41:44,826 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-13 00:41:44,826 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-13 00:41:45,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:45,226 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:45,264 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:45,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:45,267 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:45,304 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:45,308 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad73911810> has no local changes
2026-01-13 00:41:45,308 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:45,313 [ scc.git] DEBUG [detached HEAD 7304c3f] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:45,314 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:45,314 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:45,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-13 00:41:46,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-13 00:41:46,252 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:46,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-13 00:41:47,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:47,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:48,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-13 00:41:48,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:48,746 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:48,746 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:48,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-13 00:41:48,746 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:48,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:48,749 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:48,751 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:48,751 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:48,754 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:48,757 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:48,757 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-13 00:41:49,040 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-13 00:41:49,040 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-13 00:41:49,044 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:49,044 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:49,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:49,046 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-13 00:41:49,049 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:49,051 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-13 00:41:49,057 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:49,060 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:49,060 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:49,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:49,209 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:49,247 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:49,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:49,249 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:49,285 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:49,288 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad706ed050> has no local changes
2026-01-13 00:41:49,288 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:49,294 [ scc.git] DEBUG [detached HEAD fd051aa] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:49,295 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:49,295 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:49,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-13 00:41:50,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-13 00:41:50,281 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-13 00:41:50,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-13 00:41:51,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-13 00:41:51,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-13 00:41:52,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-13 00:41:52,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-13 00:41:52,759 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:41:52,759 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:52,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-13 00:41:52,759 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:52,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:52,761 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:52,763 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:52,764 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:52,766 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:52,769 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:52,769 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-13 00:41:53,042 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-13 00:41:53,043 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-13 00:41:53,046 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:53,046 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:53,046 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,048 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-13 00:41:53,051 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,053 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-13 00:41:53,059 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-13 00:41:53,062 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-13 00:41:53,062 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-13 00:41:53,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:41:53,208 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:53,246 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:53,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,249 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:53,286 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:53,289 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad706c6190> has no local changes
2026-01-13 00:41:53,289 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:53,295 [ scc.git] DEBUG [detached HEAD e271401] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:53,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:53,296 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:53,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-13 00:41:53,636 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:53,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-13 00:41:53,636 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:53,636 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,638 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-13 00:41:53,641 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:53,641 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-13 00:41:53,643 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-13 00:41:53,646 [ scc.git] DEBUG Already up to date.
2026-01-13 00:41:53,646 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:53,646 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:53,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,648 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:53,684 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:53,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:53,686 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:53,720 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:53,723 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad706665d0> has no local changes
2026-01-13 00:41:53,723 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:53,729 [ scc.git] DEBUG [detached HEAD 2f434e6] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:53,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:53,729 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-13 00:41:53,729 [ scc.repo] DEBUG ## PRs found:
2026-01-13 00:41:54,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-13 00:41:54,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-13 00:41:55,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-13 00:41:55,108 [ scc.repo] DEBUG ## Branches found:
2026-01-13 00:41:55,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-13 00:41:55,109 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:55,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:55,111 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-13 00:41:55,113 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-13 00:41:55,113 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-13 00:41:55,116 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-13 00:41:55,127 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-13 00:41:55,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-13 00:41:56,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-13 00:41:56,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-13 00:41:57,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-13 00:41:58,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-13 00:41:59,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-13 00:41:59,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-13 00:41:59,907 [ scc.git] DEBUG ## Unique users: []
2026-01-13 00:41:59,907 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:59,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:59,910 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-13 00:41:59,948 [ scc.git] DEBUG Get sha1 of %s
2026-01-13 00:41:59,948 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-13 00:41:59,950 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:41:59,988 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:41:59,992 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad738350d0> has no local changes
2026-01-13 00:41:59,992 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:41:59,998 [ scc.git] DEBUG [detached HEAD e427a59] merge master -Dorg -Ssuccess-only
2026-01-13 00:41:59,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:41:59,999 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-13 00:42:00,070 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-13 00:42:00,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:00,330 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-13 00:42:00,332 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-13 00:42:00,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:00,736 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-13 00:42:00,737 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-13 00:42:01,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:01,139 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-13 00:42:01,141 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-13 00:42:01,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:01,525 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-13 00:42:01,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:01,953 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-13 00:42:01,955 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-13 00:42:02,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:02,357 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-13 00:42:02,359 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-13 00:42:02,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:02,769 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-13 00:42:02,771 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-13 00:42:03,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:03,194 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-13 00:42:03,196 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-13 00:42:03,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:03,593 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-13 00:42:03,595 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-13 00:42:03,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:03,997 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-13 00:42:03,999 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-13 00:42:04,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:04,399 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-13 00:42:04,400 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-13 00:42:04,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:04,868 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-13 00:42:04,870 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-13 00:42:05,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:05,276 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-13 00:42:05,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:05,666 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-13 00:42:06,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:06,062 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-13 00:42:06,064 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-13 00:42:06,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:06,459 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-13 00:42:06,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:06,852 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-13 00:42:07,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:07,245 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-13 00:42:07,247 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-13 00:42:07,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:07,656 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-13 00:42:07,658 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-13 00:42:08,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:08,064 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-13 00:42:08,066 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-13 00:42:08,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:08,457 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-13 00:42:08,459 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-13 00:42:08,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-13 00:42:08,860 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-13 00:42:08,860 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-13 00:42:08,937 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad741ae550> has local changes
2026-01-13 00:42:08,937 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..ddcf816a
Previously merged:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#18 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/18/)'
2026-01-13 00:42:08,948 [ scc.git] DEBUG [detached HEAD 87f4025] merge master -Dorg -Ssuccess-only
2026-01-13 00:42:08,948 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-13 00:42:08,948 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-13 00:42:08,948 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,948 [ scc.merge] INFO
2026-01-13 00:42:08,948 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,948 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-13 00:42:08,948 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-13 00:42:08,948 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-13 00:42:08,948 [ scc.merge] INFO
2026-01-13 00:42:08,948 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-13 00:42:08,948 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,948 [ scc.merge] INFO
2026-01-13 00:42:08,948 [ scc.merge] INFO
2026-01-13 00:42:08,948 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-13 00:42:08,948 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-13 00:42:08,949 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-13 00:42:08,949 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-13 00:42:08,949 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-13 00:42:08,949 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-13 00:42:08,949 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-13 00:42:08,949 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-13 00:42:08,949 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,949 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-13 00:42:08,949 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-13 00:42:08,949 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-13 00:42:08,950 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-13 00:42:08,950 [ scc.merge] INFO Updating 9cc36cde..ddcf816a
2026-01-13 00:42:08,950 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,950 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-13 00:42:08,950 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-13 00:42:08,950 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,950 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,950 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-13 00:42:08,950 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,950 [ scc.merge] INFO
2026-01-13 00:42:08,950 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-13 00:42:08,950 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-13 00:42:08,951 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-13 00:42:08,951 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-13 00:42:08,951 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-13 00:42:08,951 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-13 00:42:08,951 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-13 00:42:08,951 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-13 00:42:08,951 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,951 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,951 [ scc.merge] INFO
2026-01-13 00:42:08,951 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-13 00:42:08,952 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-13 00:42:08,952 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-13 00:42:08,952 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-13 00:42:08,952 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-13 00:42:08,952 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-13 00:42:08,952 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,952 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-13 00:42:08,952 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-13 00:42:08,952 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-13 00:42:08,952 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-13 00:42:08,952 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-13 00:42:08,952 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-13 00:42:08,953 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-13 00:42:08,953 [ scc.merge] INFO Updating deab817..160d894
2026-01-13 00:42:08,953 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-13 00:42:08,953 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-13 00:42:08,953 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-13 00:42:08,953 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-13 00:42:08,953 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-13 00:42:08,953 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Merged PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-13 00:42:08,953 [ scc.merge] INFO Already up to date.
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO
2026-01-13 00:42:08,953 [ scc.merge] INFO Repository: ome/scripts
2026-01-13 00:42:08,953 [ scc.merge] INFO Excluded PRs:
2026-01-13 00:42:08,953 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-13 00:42:08,953 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-13 00:42:08,953 [ scc.merge] INFO Previously merged:
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-13 00:42:08,954 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-13 00:42:08,954 [ scc.merge] INFO
2026-01-13 00:42:08,954 [ scc.merge] INFO
2026-01-13 00:42:08,954 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-13 00:42:08,954 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-13 00:42:08,956 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-13 00:42:08,958 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-13 00:42:08,960 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-13 00:42:08,962 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-13 00:42:08,965 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-13 00:42:08,967 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,969 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,969 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-13 00:42:08,969 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-13 00:42:08,971 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,973 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,973 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-13 00:42:08,973 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-13 00:42:08,975 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,977 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,977 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-13 00:42:08,977 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-13 00:42:08,980 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-13 00:42:08,982 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-13 00:42:08,984 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-13 00:42:08,986 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-13 00:42:08,988 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-13 00:42:08,990 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-13 00:42:08,992 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-13 00:42:08,994 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-13 00:42:08,996 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:08,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:08,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-13 00:42:08,998 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:09,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-13 00:42:09,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-13 00:42:09,000 [ scc.git] DEBUG Calling 'git remote'
2026-01-13 00:42:09,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD e308362] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 5a043a0] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-13 00:42:55,952 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-13 00:43:05,697 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-13 00:43:08,158 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-13 00:43:12,985 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-13 00:44:01,987 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
