Skipping 198 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:35:34,688 [ scc.git] DEBUG [detached HEAD 365d777] merge master -Dorg -Ssuccess-only
2026-01-14 12:35:34,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:35:34,688 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:35:35,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-01-14 12:35:35,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-01-14 12:35:36,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-01-14 12:35:36,182 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:35:36,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-14 12:35:37,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:35:37,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:35:38,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-14 12:35:38,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:35:38,864 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:35:39,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-14 12:35:39,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-14 12:35:40,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:35:40,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-14 12:35:41,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:35:41,288 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:35:41,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-14 12:35:42,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-14 12:35:42,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-14 12:35:43,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:35:43,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-14 12:35:44,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:35:44,247 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-14 12:35:44,247 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:35:44,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-14 12:35:44,247 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:35:44,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:44,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:35:44,253 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:35:44,253 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:35:44,255 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:35:44,258 [ scc.git] DEBUG Already up to date.
2026-01-14 12:35:44,258 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-14 12:35:44,535 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-14 12:35:44,535 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-14 12:35:44,539 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-14 12:35:44,794 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-14 12:35:44,794 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-14 12:35:44,797 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-14 12:35:45,065 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-14 12:35:45,065 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-14 12:35:45,069 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:35:45,069 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:35:45,069 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:45,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-14 12:35:45,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:45,077 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-14 12:35:45,084 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:35:45,087 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-14 12:35:45,087 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-14 12:35:45,087 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-14 12:35:45,087 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-14 12:35:45,087 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-14 12:35:45,087 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-14 12:35:45,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:35:45,248 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-14 12:35:45,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:45,253 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-14 12:35:45,260 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:35:45,263 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:35:45,263 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:35:45,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:35:45,682 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-14 12:35:45,685 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:45,687 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-14 12:35:45,732 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-14 12:35:45,732 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-14 12:35:45,733 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-14 12:35:45,733 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-14 12:35:45,735 [ scc.git] DEBUG Calling 'git reset --hard 15bbb4981abe7d0097aee019e8526041083fa690'
2026-01-14 12:35:45,739 [ scc.git] DEBUG HEAD is now at 15bbb49 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-14 12:35:46,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:35:46,098 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-14 12:35:46,101 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-14 12:35:46,103 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#19](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-14 12:35:46,105 [ scc.config] DEBUG Found github.token
2026-01-14 12:35:46,105 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-14 12:35:46,105 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:35:46,142 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:35:46,142 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:46,144 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:35:46,179 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:35:46,183 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77293af3d0> has no local changes
2026-01-14 12:35:46,183 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:35:46,188 [ scc.git] DEBUG [detached HEAD e7e4ffe] merge master -Dorg -Ssuccess-only
2026-01-14 12:35:46,189 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:35:46,189 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:35:46,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-14 12:35:47,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-14 12:35:47,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-14 12:35:49,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-14 12:35:49,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:35:50,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-14 12:35:50,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:35:50,535 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-14 12:35:51,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-14 12:35:51,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-14 12:35:52,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-14 12:35:52,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:35:53,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-14 12:35:54,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:35:54,015 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-14 12:35:54,015 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:35:54,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-14 12:35:54,015 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:35:54,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:54,017 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:35:54,020 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:35:54,020 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:35:54,023 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:35:54,028 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-14 12:35:58,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-14 12:35:58,648 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-14 12:35:59,037 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-14 12:35:59,038 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-14 12:35:59,041 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-14 12:35:59,372 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-14 12:35:59,372 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-14 12:35:59,376 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:35:59,376 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:35:59,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:59,379 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-14 12:35:59,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:59,385 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-14 12:35:59,397 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-14 12:35:59,397 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-14 12:35:59,397 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-14 12:35:59,398 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-14 12:35:59,398 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-14 12:35:59,398 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-14 12:35:59,400 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-14 12:35:59,404 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-14 12:35:59,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:35:59,571 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-14 12:35:59,574 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-14 12:35:59,577 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#19](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-01-14 12:35:59,579 [ scc.config] DEBUG Found github.token
2026-01-14 12:35:59,579 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-14 12:35:59,579 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-14 12:35:59,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:35:59,585 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-14 12:35:59,600 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-14 12:35:59,600 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-14 12:35:59,600 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-14 12:35:59,600 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-14 12:35:59,600 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-14 12:35:59,603 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-14 12:35:59,608 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-14 12:35:59,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:35:59,981 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-14 12:35:59,985 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-14 12:35:59,987 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#19](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-14 12:35:59,989 [ scc.config] DEBUG Found github.token
2026-01-14 12:35:59,989 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-14 12:35:59,989 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:00,026 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:00,026 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:00,028 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:00,065 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:00,069 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7729391550> has no local changes
2026-01-14 12:36:00,069 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:00,074 [ scc.git] DEBUG [detached HEAD 5aa30a5] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:00,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:00,074 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:00,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-14 12:36:01,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-14 12:36:01,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-14 12:36:02,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:02,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:03,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-14 12:36:03,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:03,577 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:36:04,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-14 12:36:04,091 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:04,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-14 12:36:05,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:05,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:06,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-14 12:36:06,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:06,815 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-14 12:36:07,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-14 12:36:07,320 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:07,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-14 12:36:08,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:08,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:09,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-14 12:36:09,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:09,989 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-14 12:36:10,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-14 12:36:10,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-14 12:36:11,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-14 12:36:11,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-14 12:36:12,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-14 12:36:12,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-14 12:36:13,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-14 12:36:13,499 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:13,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-14 12:36:13,500 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:13,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:13,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:13,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:13,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:13,507 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:13,510 [ scc.git] DEBUG Already up to date.
2026-01-14 12:36:13,510 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-14 12:36:13,780 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-14 12:36:13,780 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-14 12:36:13,783 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-14 12:36:14,049 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-14 12:36:14,049 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-14 12:36:14,053 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-14 12:36:14,309 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-14 12:36:14,309 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-14 12:36:14,313 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:14,313 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:14,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:14,315 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-14 12:36:14,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:14,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-14 12:36:14,327 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:14,330 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-14 12:36:14,330 [ scc.git] DEBUG package.json | 2 +-
2026-01-14 12:36:14,330 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-14 12:36:14,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:14,483 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-14 12:36:14,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:14,488 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-14 12:36:14,497 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-14 12:36:14,497 [ scc.git] DEBUG Auto-merging package.json
2026-01-14 12:36:14,497 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:14,500 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-14 12:36:14,500 [ scc.git] DEBUG package.json | 2 +-
2026-01-14 12:36:14,500 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-14 12:36:14,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:14,887 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-14 12:36:14,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:14,892 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-14 12:36:14,899 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:14,902 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:14,902 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:15,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:15,298 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:15,335 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:15,335 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:15,337 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:15,373 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:15,376 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77281d76d0> has no local changes
2026-01-14 12:36:15,376 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:15,382 [ scc.git] DEBUG [detached HEAD db08068] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:15,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:15,382 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:15,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-14 12:36:16,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-14 12:36:16,303 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:16,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-14 12:36:17,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:17,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:18,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-14 12:36:18,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:18,885 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:36:18,885 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:18,885 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-14 12:36:18,886 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:18,886 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:18,888 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:18,890 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:18,891 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:18,893 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:18,896 [ scc.git] DEBUG Already up to date.
2026-01-14 12:36:18,896 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-14 12:36:19,170 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-14 12:36:19,170 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-14 12:36:19,175 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:19,175 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:19,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:19,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-14 12:36:19,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:19,182 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-14 12:36:19,188 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:19,191 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:19,191 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:19,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:19,336 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:19,373 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:19,373 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:19,375 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:19,411 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:19,414 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f772823a710> has no local changes
2026-01-14 12:36:19,414 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:19,420 [ scc.git] DEBUG [detached HEAD ef20104] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:19,420 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:19,420 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:19,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-14 12:36:20,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-14 12:36:20,411 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:21,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-14 12:36:21,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:22,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:22,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-14 12:36:23,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:23,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-14 12:36:24,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-14 12:36:24,054 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:36:24,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-14 12:36:25,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-14 12:36:25,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-14 12:36:26,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:26,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:27,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-14 12:36:27,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:28,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-14 12:36:28,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-14 12:36:28,598 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-14 12:36:29,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-14 12:36:29,111 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:29,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-14 12:36:29,112 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:29,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:29,114 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:29,117 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:29,117 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:29,119 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:29,122 [ scc.git] DEBUG Already up to date.
2026-01-14 12:36:29,122 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-14 12:36:29,453 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-14 12:36:29,453 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-14 12:36:29,457 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-14 12:36:29,709 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-14 12:36:29,709 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-14 12:36:29,713 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:29,713 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:29,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:29,715 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-14 12:36:29,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:29,720 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-14 12:36:29,727 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:29,730 [ scc.git] DEBUG setup.py | 4 +-
2026-01-14 12:36:29,730 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-14 12:36:29,730 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-14 12:36:29,730 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-14 12:36:30,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:30,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-14 12:36:30,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:30,036 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-14 12:36:30,042 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:30,045 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:30,045 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:30,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:30,447 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:30,483 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:30,483 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:30,485 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:30,523 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:30,526 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77293f9910> has no local changes
2026-01-14 12:36:30,526 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:30,532 [ scc.git] DEBUG [detached HEAD e285b69] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:30,532 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:30,532 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:30,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-14 12:36:31,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-14 12:36:31,497 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:32,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-14 12:36:32,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:33,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:33,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-14 12:36:34,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:34,311 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:36:34,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-14 12:36:35,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-14 12:36:35,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-14 12:36:36,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:36,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-14 12:36:37,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:37,342 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-14 12:36:37,342 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:37,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-14 12:36:37,342 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:37,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:37,344 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:37,347 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:37,347 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:37,349 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:37,353 [ scc.git] DEBUG Already up to date.
2026-01-14 12:36:37,353 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-14 12:36:37,717 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-14 12:36:37,717 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-14 12:36:37,722 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-14 12:36:37,984 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-14 12:36:37,984 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-14 12:36:37,988 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:37,988 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:37,988 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:37,991 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-14 12:36:37,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:37,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-14 12:36:38,006 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG Auto-merging setup.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-14 12:36:38,006 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-14 12:36:38,007 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-14 12:36:38,009 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-14 12:36:38,013 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-14 12:36:38,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:38,175 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-14 12:36:38,177 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-14 12:36:38,180 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#19](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/urls.py
- setup.py
- omero_signup/signup_settings.py
--conflicts
2026-01-14 12:36:38,182 [ scc.config] DEBUG Found github.token
2026-01-14 12:36:38,182 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-14 12:36:38,182 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-14 12:36:38,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:38,186 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-14 12:36:38,193 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:38,195 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:38,196 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:38,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:38,676 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:38,714 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:38,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:38,717 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:38,753 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:38,757 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77281e8a90> has no local changes
2026-01-14 12:36:38,757 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:38,763 [ scc.git] DEBUG [detached HEAD e11ecd1] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:38,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:38,763 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:39,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-14 12:36:39,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-14 12:36:40,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-14 12:36:40,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-14 12:36:41,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-14 12:36:41,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:42,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:42,284 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:42,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-14 12:36:42,284 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:42,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:42,287 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:42,289 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:42,289 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:42,292 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:42,299 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-14 12:36:43,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-14 12:36:43,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-14 12:36:44,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-14 12:36:44,579 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:44,580 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:44,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:44,582 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:44,619 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:44,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:44,621 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:44,659 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:44,662 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77293f8110> has no local changes
2026-01-14 12:36:44,662 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:44,668 [ scc.git] DEBUG [detached HEAD e99c6e8] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:44,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:44,668 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:45,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-14 12:36:46,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-14 12:36:46,048 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:46,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-14 12:36:47,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:47,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:48,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-14 12:36:48,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:48,572 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:36:48,572 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:48,572 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-14 12:36:48,573 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:48,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:48,575 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:48,577 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:48,577 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:48,580 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:48,583 [ scc.git] DEBUG Already up to date.
2026-01-14 12:36:48,583 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-14 12:36:49,287 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-14 12:36:49,287 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-14 12:36:49,291 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:49,291 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:49,291 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:49,293 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-14 12:36:49,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:49,298 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-14 12:36:49,304 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:49,307 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:49,307 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:49,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:49,464 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:49,502 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:49,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:49,505 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:49,542 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:49,544 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f772821d250> has no local changes
2026-01-14 12:36:49,545 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:49,550 [ scc.git] DEBUG [detached HEAD 75bb525] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:49,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:49,550 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:50,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-14 12:36:50,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-14 12:36:50,510 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:36:51,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-14 12:36:51,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:52,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:52,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-14 12:36:53,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:53,143 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:36:53,143 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:36:53,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-14 12:36:53,144 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:53,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:53,146 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:36:53,148 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:36:53,148 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:36:53,151 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:36:53,158 [ scc.git] DEBUG Updating deab817..160d894
2026-01-14 12:36:53,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-14 12:36:53,950 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-14 12:36:54,214 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-14 12:36:54,215 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-14 12:36:54,218 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:36:54,218 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:54,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:54,221 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-14 12:36:54,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:54,226 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-14 12:36:54,232 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:36:54,235 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:36:54,235 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:36:54,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:36:54,394 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:36:54,433 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:36:54,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:36:54,436 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:36:54,476 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:36:54,479 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77281f0fd0> has no local changes
2026-01-14 12:36:54,479 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:36:54,486 [ scc.git] DEBUG [detached HEAD 400a97f] merge master -Dorg -Ssuccess-only
2026-01-14 12:36:54,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:36:54,486 [ scc.git] INFO Overriding base-branch from master to main
2026-01-14 12:36:54,486 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:36:54,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-14 12:36:55,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-14 12:36:55,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-14 12:36:56,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-14 12:36:56,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:36:57,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:36:57,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-14 12:36:58,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:36:58,392 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-14 12:36:58,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-14 12:36:59,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-14 12:36:59,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-14 12:37:00,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-14 12:37:00,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:37:01,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-14 12:37:01,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:37:01,897 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-14 12:37:01,897 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:37:01,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-14 12:37:01,898 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:01,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:01,900 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-14 12:37:01,903 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:37:01,903 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-14 12:37:01,905 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-14 12:37:01,912 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-14 12:37:02,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-14 12:37:03,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-14 12:37:03,588 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-14 12:37:03,897 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-14 12:37:03,897 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-14 12:37:03,901 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-14 12:37:04,330 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-14 12:37:04,330 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-14 12:37:04,334 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:37:04,334 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:04,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:04,336 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-14 12:37:04,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:04,341 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-14 12:37:04,349 [ scc.git] DEBUG Auto-merging README.rst
2026-01-14 12:37:04,350 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-14 12:37:04,350 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-14 12:37:04,350 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-14 12:37:04,350 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-14 12:37:04,350 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-14 12:37:04,352 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-14 12:37:04,356 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-14 12:37:04,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:04,511 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-14 12:37:04,515 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-14 12:37:04,517 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#19](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-14 12:37:04,519 [ scc.config] DEBUG Found github.token
2026-01-14 12:37:04,519 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-14 12:37:04,519 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-14 12:37:04,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:04,524 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-14 12:37:04,533 [ scc.git] DEBUG Auto-merging README.rst
2026-01-14 12:37:04,533 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-14 12:37:04,534 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:37:04,537 [ scc.git] DEBUG README.rst | 3 +
2026-01-14 12:37:04,537 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-14 12:37:04,537 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-14 12:37:04,537 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-14 12:37:04,537 [ scc.git] DEBUG setup.py | 5 +-
2026-01-14 12:37:04,537 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-14 12:37:04,537 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-14 12:37:04,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:04,914 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:37:04,951 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:04,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:04,953 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:04,991 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:04,994 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7728294710> has no local changes
2026-01-14 12:37:04,994 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:04,999 [ scc.git] DEBUG [detached HEAD 78408f6] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:05,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:05,000 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:37:05,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-14 12:37:05,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-14 12:37:05,930 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:37:06,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-14 12:37:07,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:37:07,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:37:08,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-14 12:37:08,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:37:08,565 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:08,565 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:37:08,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-14 12:37:08,566 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:08,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:08,568 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:37:08,570 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:37:08,571 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:37:08,573 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:37:08,576 [ scc.git] DEBUG Already up to date.
2026-01-14 12:37:08,576 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-14 12:37:08,860 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-14 12:37:08,860 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-14 12:37:08,864 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:37:08,864 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:08,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:08,867 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-14 12:37:08,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:08,871 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-14 12:37:08,877 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:37:08,879 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:37:08,879 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:37:09,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:09,050 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:37:09,087 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:09,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:09,089 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:09,125 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:09,128 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77293fa450> has no local changes
2026-01-14 12:37:09,128 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:09,133 [ scc.git] DEBUG [detached HEAD be3b2db] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:09,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:09,133 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:37:09,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-14 12:37:10,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-14 12:37:10,165 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-14 12:37:10,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-14 12:37:11,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-14 12:37:11,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-14 12:37:12,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-14 12:37:13,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-14 12:37:13,020 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:13,020 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:37:13,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-14 12:37:13,020 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:13,020 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,023 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:37:13,025 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:37:13,025 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:37:13,027 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:37:13,030 [ scc.git] DEBUG Already up to date.
2026-01-14 12:37:13,030 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-14 12:37:13,299 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-14 12:37:13,299 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-14 12:37:13,303 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:37:13,303 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:13,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,305 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-14 12:37:13,308 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,310 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-14 12:37:13,316 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-14 12:37:13,318 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-14 12:37:13,319 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-14 12:37:13,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:13,467 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:37:13,506 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:13,506 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,508 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:13,544 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:13,547 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77293f4150> has no local changes
2026-01-14 12:37:13,547 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:13,553 [ scc.git] DEBUG [detached HEAD fca54d8] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:13,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:13,553 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:37:13,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-14 12:37:13,961 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:37:13,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-14 12:37:13,962 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:13,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,964 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-14 12:37:13,966 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:37:13,966 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-14 12:37:13,969 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-14 12:37:13,972 [ scc.git] DEBUG Already up to date.
2026-01-14 12:37:13,972 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:37:13,973 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:13,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:13,975 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:37:14,011 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:14,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:14,013 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:14,049 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:14,052 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77280adb90> has no local changes
2026-01-14 12:37:14,052 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:14,057 [ scc.git] DEBUG [detached HEAD 1ad3d68] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:14,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:14,057 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-14 12:37:14,058 [ scc.repo] DEBUG ## PRs found:
2026-01-14 12:37:14,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-14 12:37:15,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-14 12:37:15,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-14 12:37:15,526 [ scc.repo] DEBUG ## Branches found:
2026-01-14 12:37:15,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-14 12:37:15,526 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:15,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:15,529 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-14 12:37:15,531 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-14 12:37:15,531 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-14 12:37:15,534 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-14 12:37:15,547 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-14 12:37:16,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-14 12:37:16,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-14 12:37:17,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-14 12:37:18,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-14 12:37:19,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-14 12:37:19,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-14 12:37:20,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-14 12:37:20,668 [ scc.git] DEBUG ## Unique users: []
2026-01-14 12:37:20,668 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:20,668 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:20,671 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-14 12:37:20,708 [ scc.git] DEBUG Get sha1 of %s
2026-01-14 12:37:20,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-14 12:37:20,710 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:20,745 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:20,749 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77282365d0> has no local changes
2026-01-14 12:37:20,749 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:20,755 [ scc.git] DEBUG [detached HEAD 653ed08] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:20,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:20,755 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-14 12:37:20,823 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-14 12:37:21,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:21,077 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-14 12:37:21,079 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-14 12:37:21,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:21,488 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-14 12:37:21,490 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-14 12:37:21,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:21,897 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-14 12:37:21,899 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-14 12:37:22,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:22,290 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-14 12:37:22,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:22,695 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-14 12:37:22,696 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-14 12:37:23,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:23,131 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-14 12:37:23,133 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-14 12:37:23,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:23,545 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-14 12:37:23,547 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-14 12:37:23,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:23,950 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-14 12:37:23,952 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-14 12:37:24,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:24,364 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-14 12:37:24,366 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-14 12:37:24,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:24,771 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-14 12:37:24,773 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-14 12:37:25,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:25,171 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-14 12:37:25,173 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-14 12:37:25,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:25,577 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-14 12:37:25,579 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-14 12:37:25,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:25,978 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-14 12:37:26,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:26,387 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-14 12:37:26,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:26,788 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-14 12:37:26,790 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-14 12:37:27,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:27,195 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-14 12:37:27,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:27,604 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-14 12:37:28,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:28,012 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-14 12:37:28,014 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-14 12:37:28,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:28,415 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-14 12:37:28,417 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-14 12:37:28,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:28,808 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-14 12:37:28,810 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-14 12:37:29,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:29,207 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-14 12:37:29,209 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-14 12:37:29,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-14 12:37:29,612 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-14 12:37:29,612 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-14 12:37:29,687 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7729f53f50> has local changes
2026-01-14 12:37:29,687 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..ddcf816a
Previously merged:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 659 will-moore 'Fix ability of export script to be installed and run without reportlab'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/19/)'
2026-01-14 12:37:29,699 [ scc.git] DEBUG [detached HEAD f1d0676] merge master -Dorg -Ssuccess-only
2026-01-14 12:37:29,699 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-14 12:37:29,700 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-14 12:37:29,700 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-14 12:37:29,700 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-14 12:37:29,700 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-14 12:37:29,700 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-14 12:37:29,700 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-14 12:37:29,700 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-14 12:37:29,700 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-14 12:37:29,700 [ scc.merge] INFO
2026-01-14 12:37:29,700 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-14 12:37:29,700 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-14 12:37:29,700 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-14 12:37:29,700 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-14 12:37:29,700 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,701 [ scc.merge] INFO
2026-01-14 12:37:29,701 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-01-14 12:37:29,701 [ scc.merge] INFO
2026-01-14 12:37:29,701 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-14 12:37:29,701 [ scc.merge] INFO
2026-01-14 12:37:29,701 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-14 12:37:29,701 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-14 12:37:29,701 [ scc.merge] INFO Updating 9cc36cde..ddcf816a
2026-01-14 12:37:29,701 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,701 [ scc.merge] INFO
2026-01-14 12:37:29,701 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-14 12:37:29,701 [ scc.merge] INFO - PR 659 will-moore 'Fix ability of export script to be installed and run without reportlab'
2026-01-14 12:37:29,701 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-14 12:37:29,702 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-14 12:37:29,702 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-14 12:37:29,702 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-14 12:37:29,702 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-14 12:37:29,702 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-14 12:37:29,702 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,702 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-14 12:37:29,702 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,702 [ scc.merge] INFO
2026-01-14 12:37:29,702 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-14 12:37:29,703 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-14 12:37:29,703 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-14 12:37:29,703 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-14 12:37:29,703 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-14 12:37:29,703 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-14 12:37:29,703 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-14 12:37:29,703 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-14 12:37:29,703 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,703 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,703 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-14 12:37:29,703 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-14 12:37:29,704 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-14 12:37:29,704 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-14 12:37:29,704 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-14 12:37:29,704 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-14 12:37:29,704 [ scc.merge] INFO Updating deab817..160d894
2026-01-14 12:37:29,704 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-14 12:37:29,704 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-14 12:37:29,704 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-14 12:37:29,704 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-14 12:37:29,704 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-14 12:37:29,704 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Merged PRs:
2026-01-14 12:37:29,704 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,704 [ scc.merge] INFO
2026-01-14 12:37:29,704 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-14 12:37:29,705 [ scc.merge] INFO Already up to date.
2026-01-14 12:37:29,705 [ scc.merge] INFO
2026-01-14 12:37:29,705 [ scc.merge] INFO
2026-01-14 12:37:29,705 [ scc.merge] INFO Repository: ome/scripts
2026-01-14 12:37:29,705 [ scc.merge] INFO Excluded PRs:
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-14 12:37:29,705 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-14 12:37:29,705 [ scc.merge] INFO Previously merged:
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-14 12:37:29,705 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-14 12:37:29,705 [ scc.merge] INFO
2026-01-14 12:37:29,705 [ scc.merge] INFO
2026-01-14 12:37:29,705 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-14 12:37:29,705 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-14 12:37:29,707 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-14 12:37:29,709 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-14 12:37:29,711 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-14 12:37:29,713 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-14 12:37:29,715 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-14 12:37:29,717 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-14 12:37:29,719 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-14 12:37:29,721 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-14 12:37:29,723 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-14 12:37:29,725 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-14 12:37:29,727 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-14 12:37:29,729 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-14 12:37:29,731 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-14 12:37:29,733 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-14 12:37:29,735 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,737 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,737 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-14 12:37:29,737 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,739 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,739 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-14 12:37:29,739 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,741 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,741 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-14 12:37:29,741 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-14 12:37:29,743 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,745 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,745 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-14 12:37:29,745 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-14 12:37:29,747 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,749 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-14 12:37:29,749 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-14 12:37:29,749 [ scc.git] DEBUG Calling 'git remote'
2026-01-14 12:37:29,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD fb7ee68] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 5ab09ab] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-14 12:38:17,835 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-14 12:38:27,418 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-14 12:38:29,919 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-14 12:38:34,880 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-14 12:39:20,741 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
