Skipping 201 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2026-01-21 00:46:06,005 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:46:06,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-21 00:46:07,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-21 00:46:07,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:07,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-21 00:46:08,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:08,395 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:46:08,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-21 00:46:09,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-21 00:46:09,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-21 00:46:10,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:10,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-21 00:46:11,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:11,377 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-21 00:46:11,377 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:46:11,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-21 00:46:11,377 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:11,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:11,380 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:46:11,382 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:46:11,382 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:46:11,385 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:46:11,388 [ scc.git] DEBUG Already up to date.
2026-01-21 00:46:11,388 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-21 00:46:11,658 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-21 00:46:11,659 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-21 00:46:11,662 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-21 00:46:11,915 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-21 00:46:11,915 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-21 00:46:11,919 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-21 00:46:12,174 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-21 00:46:12,175 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-21 00:46:12,179 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:46:12,179 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:12,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:12,181 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-21 00:46:12,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:12,186 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-21 00:46:12,194 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:12,197 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-21 00:46:12,197 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-21 00:46:12,197 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-21 00:46:12,197 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-21 00:46:12,197 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-21 00:46:12,197 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-21 00:46:12,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:12,342 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-21 00:46:12,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:12,348 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-21 00:46:12,355 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:12,358 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:46:12,358 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:46:12,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:12,736 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-21 00:46:12,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:12,742 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-21 00:46:12,767 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-21 00:46:12,767 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-21 00:46:12,767 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-21 00:46:12,767 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-21 00:46:12,770 [ scc.git] DEBUG Calling 'git reset --hard 3de0db36c2605e5b1ae1f069c2e5dfafe702da4e'
2026-01-21 00:46:12,773 [ scc.git] DEBUG HEAD is now at 3de0db3 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-21 00:46:13,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:13,147 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-21 00:46:13,150 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-21 00:46:13,152 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#26](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-21 00:46:13,154 [ scc.config] DEBUG Found github.token
2026-01-21 00:46:13,155 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-21 00:46:13,155 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:46:13,193 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:13,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:13,195 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:46:13,231 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:46:13,235 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a44798c50> has no local changes
2026-01-21 00:46:13,235 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:46:13,241 [ scc.git] DEBUG [detached HEAD 49fc5db] merge master -Dorg -Ssuccess-only
2026-01-21 00:46:13,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:46:13,241 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:46:13,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-21 00:46:14,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-01-21 00:46:14,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-01-21 00:46:15,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-01-21 00:46:15,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:16,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-01-21 00:46:16,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:16,625 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-01-21 00:46:17,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-21 00:46:17,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-21 00:46:18,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-21 00:46:18,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:19,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-21 00:46:19,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:19,520 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-21 00:46:20,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-21 00:46:20,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-21 00:46:20,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-21 00:46:21,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:21,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-21 00:46:22,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:22,349 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-21 00:46:22,349 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:46:22,349 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-21 00:46:22,349 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:22,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:22,352 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:46:22,354 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:46:22,354 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:46:22,357 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:46:22,364 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-21 00:46:23,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-21 00:46:23,040 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-21 00:46:23,335 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-21 00:46:23,335 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-21 00:46:23,339 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-21 00:46:23,624 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-21 00:46:23,624 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-21 00:46:23,628 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-01-21 00:46:23,885 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-21 00:46:23,885 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-01-21 00:46:23,889 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:46:23,889 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:23,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:23,891 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-21 00:46:23,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:23,897 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-21 00:46:23,911 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-21 00:46:23,911 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-21 00:46:23,911 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-21 00:46:23,911 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-21 00:46:23,911 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-21 00:46:23,911 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-21 00:46:23,914 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-21 00:46:23,918 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-21 00:46:24,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:24,074 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-21 00:46:24,078 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-21 00:46:24,080 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#26](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-01-21 00:46:24,082 [ scc.config] DEBUG Found github.token
2026-01-21 00:46:24,082 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-21 00:46:24,083 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-21 00:46:24,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:24,088 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-21 00:46:24,103 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-21 00:46:24,103 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-21 00:46:24,103 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-21 00:46:24,103 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-21 00:46:24,103 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-21 00:46:24,106 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-21 00:46:24,110 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-21 00:46:24,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:24,467 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-21 00:46:24,471 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-21 00:46:24,474 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#26](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-21 00:46:24,475 [ scc.config] DEBUG Found github.token
2026-01-21 00:46:24,475 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-21 00:46:24,475 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-01-21 00:46:24,478 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:24,480 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-01-21 00:46:24,488 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:24,492 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-01-21 00:46:24,492 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-01-21 00:46:24,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:24,872 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:46:24,911 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:24,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:24,913 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:46:24,950 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:46:24,954 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4482c1d0> has no local changes
2026-01-21 00:46:24,954 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:46:24,961 [ scc.git] DEBUG [detached HEAD e4489f8] merge master -Dorg -Ssuccess-only
2026-01-21 00:46:24,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:46:24,961 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:46:25,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-21 00:46:25,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-21 00:46:26,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-21 00:46:26,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:27,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:27,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-21 00:46:28,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:28,355 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:46:28,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-21 00:46:28,870 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:46:29,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-21 00:46:29,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:30,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:30,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-21 00:46:31,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:31,389 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-21 00:46:31,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-21 00:46:31,881 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:46:32,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-21 00:46:33,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:33,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:34,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-21 00:46:34,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:34,696 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-21 00:46:35,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-21 00:46:35,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-21 00:46:36,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-21 00:46:36,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-21 00:46:37,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-21 00:46:37,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-21 00:46:38,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-21 00:46:38,208 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:46:38,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-21 00:46:38,208 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:38,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:38,211 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:46:38,213 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:46:38,213 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:46:38,216 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:46:38,218 [ scc.git] DEBUG Already up to date.
2026-01-21 00:46:38,219 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-21 00:46:38,490 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-21 00:46:38,490 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-21 00:46:38,494 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-21 00:46:38,748 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-21 00:46:38,748 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-21 00:46:38,752 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-21 00:46:39,003 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-21 00:46:39,003 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-21 00:46:39,006 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:46:39,006 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:39,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:39,008 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-21 00:46:39,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:39,013 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-21 00:46:39,020 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:39,023 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-21 00:46:39,023 [ scc.git] DEBUG package.json | 2 +-
2026-01-21 00:46:39,024 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-21 00:46:39,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:39,178 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-21 00:46:39,181 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:39,183 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-21 00:46:39,192 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-21 00:46:39,192 [ scc.git] DEBUG Auto-merging package.json
2026-01-21 00:46:39,193 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:39,196 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-21 00:46:39,196 [ scc.git] DEBUG package.json | 2 +-
2026-01-21 00:46:39,196 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-21 00:46:39,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:39,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-21 00:46:39,604 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:39,606 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-21 00:46:39,613 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:39,616 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:46:39,616 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:46:39,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:39,997 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:46:40,037 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:40,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:40,039 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:46:40,076 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:46:40,079 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4484b090> has no local changes
2026-01-21 00:46:40,080 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:46:40,085 [ scc.git] DEBUG [detached HEAD 120af10] merge master -Dorg -Ssuccess-only
2026-01-21 00:46:40,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:46:40,085 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:46:40,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-21 00:46:40,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-21 00:46:40,993 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:46:41,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-21 00:46:42,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:42,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:43,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-21 00:46:43,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:43,586 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:46:43,586 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:46:43,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-21 00:46:43,586 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:43,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:43,588 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:46:43,591 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:46:43,591 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:46:43,593 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:46:43,596 [ scc.git] DEBUG Already up to date.
2026-01-21 00:46:43,596 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-21 00:46:43,868 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-21 00:46:43,868 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-21 00:46:43,872 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:46:43,872 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:43,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:43,874 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-21 00:46:43,877 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:43,879 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-21 00:46:43,885 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:43,888 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:46:43,888 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:46:44,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:44,204 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:46:44,242 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:44,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:44,244 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:46:44,280 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:46:44,283 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a44849ed0> has no local changes
2026-01-21 00:46:44,283 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:46:44,288 [ scc.git] DEBUG [detached HEAD e626df9] merge master -Dorg -Ssuccess-only
2026-01-21 00:46:44,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:46:44,289 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:46:44,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-21 00:46:45,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-21 00:46:45,256 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:46:45,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-21 00:46:46,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:46,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:47,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-21 00:46:47,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:48,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-21 00:46:48,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-21 00:46:48,647 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:46:49,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-21 00:46:49,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-21 00:46:50,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-21 00:46:50,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:51,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:51,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-21 00:46:52,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:52,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-21 00:46:53,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-21 00:46:53,082 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-21 00:46:53,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-21 00:46:53,563 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:46:53,563 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-21 00:46:53,563 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:53,563 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:53,566 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:46:53,568 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:46:53,568 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:46:53,571 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:46:53,574 [ scc.git] DEBUG Already up to date.
2026-01-21 00:46:53,574 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-21 00:46:53,893 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-21 00:46:53,893 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-21 00:46:53,897 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-21 00:46:54,150 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-21 00:46:54,150 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-21 00:46:54,154 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:46:54,154 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:54,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:54,156 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-21 00:46:54,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:54,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-21 00:46:54,168 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:54,171 [ scc.git] DEBUG setup.py | 4 +-
2026-01-21 00:46:54,171 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-21 00:46:54,171 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-21 00:46:54,171 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-21 00:46:54,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:54,328 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-21 00:46:54,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:54,333 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-21 00:46:54,339 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:46:54,342 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:46:54,342 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:46:54,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:46:54,741 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:46:54,779 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:46:54,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:46:54,782 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:46:54,819 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:46:54,822 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4482fad0> has no local changes
2026-01-21 00:46:54,822 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:46:54,828 [ scc.git] DEBUG [detached HEAD dcf58db] merge master -Dorg -Ssuccess-only
2026-01-21 00:46:54,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:46:54,829 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:46:55,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-21 00:46:55,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-21 00:46:55,778 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:46:56,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-21 00:46:56,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:46:57,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:46:57,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-21 00:46:58,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:46:58,342 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:46:58,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-21 00:46:59,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-21 00:46:59,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-21 00:47:00,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:00,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-21 00:47:01,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:01,288 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-21 00:47:01,288 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:01,288 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-21 00:47:01,288 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:01,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:01,291 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:01,293 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:01,293 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:01,296 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:01,298 [ scc.git] DEBUG Already up to date.
2026-01-21 00:47:01,298 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-21 00:47:01,673 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-21 00:47:01,673 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-21 00:47:01,677 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-21 00:47:01,933 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-21 00:47:01,933 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-21 00:47:01,937 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:01,937 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:01,937 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:01,939 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-21 00:47:01,942 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:01,944 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-21 00:47:01,955 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG Auto-merging setup.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-21 00:47:01,955 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-21 00:47:01,955 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-21 00:47:01,958 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-21 00:47:01,962 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-21 00:47:02,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:02,122 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-21 00:47:02,125 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-21 00:47:02,127 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#26](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
--conflicts
2026-01-21 00:47:02,129 [ scc.config] DEBUG Found github.token
2026-01-21 00:47:02,129 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-21 00:47:02,129 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-21 00:47:02,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:02,134 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-21 00:47:02,141 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:02,144 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:47:02,144 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:47:02,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:02,518 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:02,556 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:02,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:02,558 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:02,594 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:02,597 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a44857090> has no local changes
2026-01-21 00:47:02,597 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:02,603 [ scc.git] DEBUG [detached HEAD fa784e0] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:02,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:02,603 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:03,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-21 00:47:03,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-21 00:47:04,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-21 00:47:04,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-21 00:47:05,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-21 00:47:05,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:05,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:05,970 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:05,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-21 00:47:05,970 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:05,970 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:05,972 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:05,975 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:05,975 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:05,977 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:05,984 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-21 00:47:06,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-21 00:47:07,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-21 00:47:08,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-21 00:47:08,118 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:08,118 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:08,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:08,121 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:08,159 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:08,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:08,161 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:08,198 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:08,201 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a416b6c50> has no local changes
2026-01-21 00:47:08,201 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:08,206 [ scc.git] DEBUG [detached HEAD 6efc8b9] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:08,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:08,207 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:08,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-21 00:47:09,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-21 00:47:09,124 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:47:09,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-21 00:47:10,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:10,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:11,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-21 00:47:11,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:11,809 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:11,809 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:11,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-21 00:47:11,809 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:11,809 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:11,811 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:11,814 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:11,814 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:11,816 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:11,819 [ scc.git] DEBUG Already up to date.
2026-01-21 00:47:11,819 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-21 00:47:12,095 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-21 00:47:12,096 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-21 00:47:12,099 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:12,099 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:12,099 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:12,101 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-21 00:47:12,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:12,106 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-21 00:47:12,112 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:12,115 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:47:12,115 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:47:12,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:12,270 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:12,307 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:12,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:12,309 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:12,345 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:12,348 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a416de310> has no local changes
2026-01-21 00:47:12,348 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:12,354 [ scc.git] DEBUG [detached HEAD 1cfa6c1] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:12,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:12,354 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:12,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-21 00:47:13,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-21 00:47:13,428 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:47:13,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-21 00:47:14,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:14,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:15,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-21 00:47:15,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:15,930 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:15,930 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:15,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-21 00:47:15,930 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:15,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:15,933 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:15,935 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:15,935 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:15,938 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:15,945 [ scc.git] DEBUG Updating deab817..160d894
2026-01-21 00:47:16,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-21 00:47:16,621 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-21 00:47:16,902 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-21 00:47:16,902 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-21 00:47:16,906 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:16,906 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:16,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:16,908 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-21 00:47:16,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:16,912 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-21 00:47:16,919 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:16,922 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:47:16,922 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:47:17,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:17,067 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:17,105 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:17,105 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:17,107 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:17,142 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:17,145 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4484be50> has no local changes
2026-01-21 00:47:17,145 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:17,150 [ scc.git] DEBUG [detached HEAD 5f242f5] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:17,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:17,151 [ scc.git] INFO Overriding base-branch from master to main
2026-01-21 00:47:17,151 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:17,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-21 00:47:18,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-21 00:47:18,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-21 00:47:19,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-21 00:47:19,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:20,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:20,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-21 00:47:21,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:21,384 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-21 00:47:21,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-21 00:47:22,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-21 00:47:22,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-21 00:47:23,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-21 00:47:23,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:24,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-21 00:47:24,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:24,774 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-21 00:47:24,775 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:24,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-21 00:47:24,775 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:24,775 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:24,777 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-21 00:47:24,779 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:24,779 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-21 00:47:24,782 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-21 00:47:24,789 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-21 00:47:25,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-21 00:47:26,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-21 00:47:26,213 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-21 00:47:26,511 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-21 00:47:26,511 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-21 00:47:26,515 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-21 00:47:26,922 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-21 00:47:26,922 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-21 00:47:26,926 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:26,926 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:26,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:26,928 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-21 00:47:26,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:26,933 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-21 00:47:26,963 [ scc.git] DEBUG Auto-merging README.rst
2026-01-21 00:47:26,963 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-21 00:47:26,963 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-21 00:47:26,963 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-21 00:47:26,963 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-21 00:47:26,963 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-21 00:47:26,966 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-21 00:47:26,970 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-21 00:47:27,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:27,115 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-21 00:47:27,117 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-21 00:47:27,120 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#26](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-21 00:47:27,122 [ scc.config] DEBUG Found github.token
2026-01-21 00:47:27,122 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-21 00:47:27,122 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-21 00:47:27,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:27,127 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-21 00:47:27,135 [ scc.git] DEBUG Auto-merging README.rst
2026-01-21 00:47:27,135 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-21 00:47:27,136 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:27,139 [ scc.git] DEBUG README.rst | 3 +
2026-01-21 00:47:27,139 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-21 00:47:27,139 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-21 00:47:27,139 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-21 00:47:27,139 [ scc.git] DEBUG setup.py | 5 +-
2026-01-21 00:47:27,139 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-21 00:47:27,139 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-21 00:47:27,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:27,505 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:27,542 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:27,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:27,544 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:27,580 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:27,583 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a41670710> has no local changes
2026-01-21 00:47:27,584 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:27,589 [ scc.git] DEBUG [detached HEAD 0260f22] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:27,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:27,590 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:28,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-21 00:47:28,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-21 00:47:28,546 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:47:29,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-21 00:47:29,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:30,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:30,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-21 00:47:31,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:31,285 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:31,285 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:31,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-21 00:47:31,285 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:31,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:31,287 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:31,290 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:31,290 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:31,292 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:31,295 [ scc.git] DEBUG Already up to date.
2026-01-21 00:47:31,295 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-21 00:47:31,570 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-21 00:47:31,571 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-21 00:47:31,574 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:31,574 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:31,574 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:31,576 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-21 00:47:31,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:31,581 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-21 00:47:31,587 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:31,589 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:47:31,590 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:47:31,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:31,738 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:31,777 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:31,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:31,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:31,816 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:31,819 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a416b6290> has no local changes
2026-01-21 00:47:31,819 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:31,825 [ scc.git] DEBUG [detached HEAD 1f9c8f5] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:31,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:31,826 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:32,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-21 00:47:33,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-21 00:47:33,195 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-21 00:47:33,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-21 00:47:34,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-21 00:47:34,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-21 00:47:35,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-21 00:47:35,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-21 00:47:35,731 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:35,731 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:35,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-21 00:47:35,731 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:35,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:35,734 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:35,736 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:35,736 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:35,739 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:35,742 [ scc.git] DEBUG Already up to date.
2026-01-21 00:47:35,742 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-21 00:47:36,016 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-21 00:47:36,016 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-21 00:47:36,020 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:36,020 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:36,020 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,022 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-21 00:47:36,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,027 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-21 00:47:36,033 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-21 00:47:36,036 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-21 00:47:36,036 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-21 00:47:36,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:36,218 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:36,255 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:36,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,257 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:36,294 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:36,297 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4170e990> has no local changes
2026-01-21 00:47:36,298 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:36,304 [ scc.git] DEBUG [detached HEAD c3a4ba6] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:36,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:36,304 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:36,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-21 00:47:36,628 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:36,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-21 00:47:36,628 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:36,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,631 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-21 00:47:36,633 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:36,633 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-21 00:47:36,635 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-21 00:47:36,638 [ scc.git] DEBUG Already up to date.
2026-01-21 00:47:36,638 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:36,638 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:36,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,640 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:36,679 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:36,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:36,681 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:36,719 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:36,722 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4484a750> has no local changes
2026-01-21 00:47:36,722 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:36,728 [ scc.git] DEBUG [detached HEAD 0d87278] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:36,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:36,728 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-21 00:47:36,728 [ scc.repo] DEBUG ## PRs found:
2026-01-21 00:47:37,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-21 00:47:37,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-21 00:47:38,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-21 00:47:38,130 [ scc.repo] DEBUG ## Branches found:
2026-01-21 00:47:38,131 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-21 00:47:38,131 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:38,131 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:38,133 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-21 00:47:38,136 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-21 00:47:38,136 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-21 00:47:38,138 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-21 00:47:38,150 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-21 00:47:38,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-21 00:47:39,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-21 00:47:40,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-21 00:47:41,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-21 00:47:42,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-21 00:47:42,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-21 00:47:43,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-21 00:47:43,677 [ scc.git] DEBUG ## Unique users: []
2026-01-21 00:47:43,677 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:43,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:43,680 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-21 00:47:43,716 [ scc.git] DEBUG Get sha1 of %s
2026-01-21 00:47:43,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-21 00:47:43,719 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:43,755 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:43,759 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4051a5d0> has no local changes
2026-01-21 00:47:43,759 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:43,765 [ scc.git] DEBUG [detached HEAD ed6f529] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:43,765 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:43,765 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-21 00:47:43,833 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-21 00:47:44,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:44,083 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-21 00:47:44,085 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-21 00:47:44,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:44,484 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-21 00:47:44,485 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-21 00:47:44,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:44,883 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-21 00:47:44,885 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-21 00:47:45,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:45,271 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-21 00:47:45,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:45,662 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-21 00:47:45,664 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-21 00:47:46,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:46,066 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-21 00:47:46,068 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-21 00:47:46,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:46,480 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-21 00:47:46,482 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-21 00:47:46,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:46,880 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-21 00:47:46,882 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-21 00:47:47,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:47,276 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-21 00:47:47,278 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-21 00:47:47,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:47,669 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-21 00:47:47,671 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-21 00:47:48,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:48,072 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-21 00:47:48,074 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-21 00:47:48,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:48,482 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-21 00:47:48,484 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-21 00:47:48,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:48,875 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-21 00:47:49,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:49,274 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-21 00:47:49,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:49,669 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-21 00:47:49,671 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-21 00:47:50,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:50,065 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-21 00:47:50,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:50,467 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-21 00:47:50,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:50,861 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-21 00:47:50,863 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-21 00:47:51,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:51,255 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-21 00:47:51,256 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-21 00:47:51,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:51,657 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-21 00:47:51,659 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-21 00:47:52,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:52,046 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-21 00:47:52,048 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-21 00:47:52,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-21 00:47:52,471 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-21 00:47:52,471 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-21 00:47:52,557 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a4567de90> has local changes
2026-01-21 00:47:52,557 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 662 will-moore 'Export script runnable without OMERO' (stage: draft)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..b79d638b
Previously merged:
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 659 will-moore 'Fix ability of export script to be installed and run without reportlab'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#26 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/26/)'
2026-01-21 00:47:52,570 [ scc.git] DEBUG [detached HEAD a7bc195] merge master -Dorg -Ssuccess-only
2026-01-21 00:47:52,570 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-21 00:47:52,570 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-21 00:47:52,570 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,570 [ scc.merge] INFO
2026-01-21 00:47:52,570 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,570 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-21 00:47:52,570 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-21 00:47:52,570 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-21 00:47:52,570 [ scc.merge] INFO
2026-01-21 00:47:52,570 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-21 00:47:52,570 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,570 [ scc.merge] INFO
2026-01-21 00:47:52,570 [ scc.merge] INFO
2026-01-21 00:47:52,570 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-21 00:47:52,570 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,570 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-21 00:47:52,570 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,570 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-21 00:47:52,571 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-21 00:47:52,571 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-21 00:47:52,571 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-21 00:47:52,571 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-21 00:47:52,571 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-21 00:47:52,571 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-21 00:47:52,571 [ scc.merge] INFO
2026-01-21 00:47:52,571 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-21 00:47:52,571 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,571 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO' (stage: draft)
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-21 00:47:52,572 [ scc.merge] INFO Updating 9cc36cde..b79d638b
2026-01-21 00:47:52,572 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 659 will-moore 'Fix ability of export script to be installed and run without reportlab'
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-21 00:47:52,572 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-21 00:47:52,572 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-21 00:47:52,572 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-21 00:47:52,572 [ scc.merge] INFO
2026-01-21 00:47:52,572 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-21 00:47:52,573 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-21 00:47:52,573 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-21 00:47:52,573 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-21 00:47:52,573 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-21 00:47:52,573 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-21 00:47:52,573 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-21 00:47:52,573 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,573 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-01-21 00:47:52,573 [ scc.merge] INFO
2026-01-21 00:47:52,573 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-21 00:47:52,574 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-21 00:47:52,574 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-21 00:47:52,574 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-21 00:47:52,574 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-21 00:47:52,574 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-21 00:47:52,574 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,574 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-21 00:47:52,574 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-21 00:47:52,574 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-21 00:47:52,574 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-21 00:47:52,574 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-21 00:47:52,574 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-21 00:47:52,575 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-21 00:47:52,575 [ scc.merge] INFO Updating deab817..160d894
2026-01-21 00:47:52,575 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-21 00:47:52,575 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-21 00:47:52,575 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-21 00:47:52,575 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-21 00:47:52,575 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-21 00:47:52,575 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Merged PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-21 00:47:52,575 [ scc.merge] INFO Already up to date.
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO
2026-01-21 00:47:52,575 [ scc.merge] INFO Repository: ome/scripts
2026-01-21 00:47:52,575 [ scc.merge] INFO Excluded PRs:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-21 00:47:52,575 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-21 00:47:52,575 [ scc.merge] INFO Previously merged:
2026-01-21 00:47:52,575 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-21 00:47:52,576 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-21 00:47:52,576 [ scc.merge] INFO
2026-01-21 00:47:52,576 [ scc.merge] INFO
2026-01-21 00:47:52,576 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-21 00:47:52,576 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-21 00:47:52,578 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-21 00:47:52,580 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-21 00:47:52,582 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,584 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-21 00:47:52,585 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-21 00:47:52,587 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-21 00:47:52,589 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-21 00:47:52,591 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-21 00:47:52,594 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-21 00:47:52,596 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-21 00:47:52,598 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-21 00:47:52,600 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-21 00:47:52,602 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-21 00:47:52,604 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-21 00:47:52,606 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-21 00:47:52,608 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,610 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,610 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-21 00:47:52,610 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,612 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,612 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-21 00:47:52,612 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,614 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-21 00:47:52,615 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-21 00:47:52,617 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-21 00:47:52,619 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-21 00:47:52,621 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-21 00:47:52,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-21 00:47:52,623 [ scc.git] DEBUG Calling 'git remote'
2026-01-21 00:47:52,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 8f3b258] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 5c05bfe] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-21 00:48:40,047 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-21 00:48:49,513 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-21 00:48:52,084 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-21 00:48:56,996 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-21 00:49:37,868 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
