Skipping 223 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-05 00:40:14,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-05 00:40:14,450 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:14,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:14,909 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:15,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-05 00:40:15,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:15,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:15,606 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:40:15,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:16,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-05 00:40:16,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:16,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-05 00:40:16,843 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:17,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-05 00:40:17,376 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:17,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:17,855 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:18,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-05 00:40:18,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:18,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:18,577 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-05 00:40:18,577 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:18,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-05 00:40:18,578 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:18,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:18,581 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:18,583 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:18,583 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:18,586 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:18,590 [ scc.git] DEBUG Already up to date.
2025-08-05 00:40:18,590 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-05 00:40:18,873 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-05 00:40:18,873 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-05 00:40:18,878 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-05 00:40:19,184 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-05 00:40:19,185 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-05 00:40:19,189 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:19,189 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:19,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:19,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-05 00:40:19,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:19,198 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-05 00:40:19,208 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:19,211 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-05 00:40:19,211 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-05 00:40:19,211 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-05 00:40:19,211 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-05 00:40:19,211 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-05 00:40:19,211 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-05 00:40:19,212 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:19,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:19,404 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-05 00:40:19,408 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:19,410 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-05 00:40:19,419 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:19,422 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-05 00:40:19,422 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-05 00:40:19,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:19,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:19,846 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:19,888 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:19,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:19,891 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:19,932 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:19,936 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738be01f10> has no local changes
2025-08-05 00:40:19,936 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:19,943 [ scc.git] DEBUG [detached HEAD 7045512] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:19,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:19,943 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:20,097 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:20,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-05 00:40:20,657 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:20,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-05 00:40:21,189 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:21,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-05 00:40:21,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:21,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-05 00:40:22,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:22,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:22,759 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:23,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-05 00:40:23,664 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:23,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:23,860 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-05 00:40:24,111 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:24,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-05 00:40:24,664 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:25,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-05 00:40:25,379 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:25,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-05 00:40:25,925 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:26,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:26,416 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:26,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-05 00:40:26,974 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:27,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:27,171 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-05 00:40:27,171 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:27,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-05 00:40:27,171 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:27,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:27,174 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:27,177 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:27,177 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:27,181 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:27,189 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-05 00:40:27,422 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:27,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-05 00:40:27,829 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-05 00:40:28,117 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-05 00:40:28,117 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-05 00:40:28,122 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-05 00:40:28,399 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-05 00:40:28,399 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-05 00:40:28,403 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:28,403 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:28,403 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:28,406 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-05 00:40:28,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:28,413 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-05 00:40:28,426 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-05 00:40:28,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-05 00:40:28,426 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-05 00:40:28,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-05 00:40:28,426 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:40:28,427 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:40:28,429 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-05 00:40:28,434 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-05 00:40:28,435 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:28,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:28,635 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-05 00:40:28,640 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-05 00:40:28,643 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-05 00:40:28,645 [ scc.config] DEBUG Found github.token
2025-08-05 00:40:28,645 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-05 00:40:28,645 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-05 00:40:28,650 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:28,652 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-05 00:40:28,668 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-05 00:40:28,668 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-05 00:40:28,668 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-05 00:40:28,668 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:40:28,669 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:40:28,672 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-05 00:40:28,677 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-05 00:40:28,886 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:29,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:29,105 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-05 00:40:29,109 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-05 00:40:29,112 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-05 00:40:29,114 [ scc.config] DEBUG Found github.token
2025-08-05 00:40:29,114 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-05 00:40:29,114 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:29,155 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:29,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:29,158 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:29,196 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:29,200 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738be19590> has no local changes
2025-08-05 00:40:29,200 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:29,207 [ scc.git] DEBUG [detached HEAD 85e9d9d] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:29,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:29,207 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:29,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:29,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-05 00:40:29,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:30,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-05 00:40:30,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:30,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-05 00:40:31,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:31,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:31,566 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:31,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:40:32,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:32,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-05 00:40:32,607 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:32,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:32,806 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:40:33,057 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:33,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-05 00:40:33,316 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-05 00:40:33,567 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:33,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-05 00:40:34,146 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:34,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:34,666 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:34,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:40:35,212 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:35,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-05 00:40:35,714 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:35,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:35,904 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-05 00:40:36,155 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:36,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-05 00:40:36,402 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-05 00:40:36,653 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:37,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-05 00:40:37,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:37,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:37,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:38,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:40:38,391 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:38,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-05 00:40:38,983 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:39,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:39,193 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-05 00:40:39,444 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:39,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-05 00:40:39,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:40,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-05 00:40:40,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:40,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-05 00:40:41,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:41,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-05 00:40:41,490 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:41,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-05 00:40:41,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:42,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-05 00:40:42,501 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:42,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-05 00:40:42,799 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:42,800 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-05 00:40:42,800 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:42,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:42,803 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:42,805 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:42,805 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:42,808 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:42,812 [ scc.git] DEBUG Already up to date.
2025-08-05 00:40:42,812 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-05 00:40:43,105 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-05 00:40:43,105 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-05 00:40:43,110 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-05 00:40:43,394 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-05 00:40:43,394 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-05 00:40:43,398 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-05 00:40:43,672 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-05 00:40:43,672 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-05 00:40:43,676 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:43,677 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:43,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:43,679 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-05 00:40:43,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:43,684 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-05 00:40:43,693 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:43,696 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-05 00:40:43,696 [ scc.git] DEBUG package.json | 2 +-
2025-08-05 00:40:43,696 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-05 00:40:43,698 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:43,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:43,874 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-05 00:40:43,877 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:43,879 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-05 00:40:43,890 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-05 00:40:43,890 [ scc.git] DEBUG Auto-merging package.json
2025-08-05 00:40:43,891 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:43,894 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-05 00:40:43,894 [ scc.git] DEBUG package.json | 2 +-
2025-08-05 00:40:43,894 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-05 00:40:44,125 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:44,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:44,315 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-05 00:40:44,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:44,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-05 00:40:44,329 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:44,332 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-05 00:40:44,332 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-05 00:40:44,566 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:44,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:44,766 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:44,808 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:44,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:44,810 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:44,851 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:44,855 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738842efd0> has no local changes
2025-08-05 00:40:44,855 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:44,862 [ scc.git] DEBUG [detached HEAD be54c0b] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:44,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:44,862 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:45,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:45,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-05 00:40:45,224 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:45,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-05 00:40:45,224 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:45,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:45,227 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:45,229 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:45,229 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:45,232 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:45,235 [ scc.git] DEBUG Already up to date.
2025-08-05 00:40:45,235 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:45,235 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:45,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:45,237 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:45,276 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:45,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:45,278 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:45,315 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:45,318 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738be1c490> has no local changes
2025-08-05 00:40:45,318 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:45,325 [ scc.git] DEBUG [detached HEAD 9fcfe8c] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:45,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:45,325 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:45,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:45,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-05 00:40:46,025 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:46,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-05 00:40:46,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:46,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-05 00:40:47,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:47,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-05 00:40:47,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:47,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:48,087 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:48,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:40:48,642 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:48,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-05 00:40:49,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:49,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:49,633 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:49,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-05 00:40:50,156 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:50,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-05 00:40:50,366 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-05 00:40:50,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:50,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-05 00:40:50,881 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:50,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-05 00:40:50,881 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:50,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:50,884 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:50,886 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:50,887 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:50,889 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:50,893 [ scc.git] DEBUG Already up to date.
2025-08-05 00:40:50,893 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-05 00:40:51,393 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-05 00:40:51,393 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-05 00:40:51,396 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:51,396 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:51,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:51,398 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-05 00:40:51,401 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:51,403 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-05 00:40:51,411 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:40:51,414 [ scc.git] DEBUG setup.py | 4 +-
2025-08-05 00:40:51,414 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-05 00:40:51,414 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-05 00:40:51,415 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-05 00:40:51,416 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:51,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:51,606 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:51,648 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:51,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:51,651 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:51,693 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:51,696 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738844ac50> has no local changes
2025-08-05 00:40:51,697 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:51,703 [ scc.git] DEBUG [detached HEAD 22dccfd] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:51,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:51,704 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:51,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:52,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-05 00:40:52,394 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:52,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-05 00:40:52,884 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:53,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-05 00:40:53,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:53,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-05 00:40:53,941 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:54,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:54,415 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:54,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-05 00:40:54,880 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:55,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:55,070 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-05 00:40:55,070 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:40:55,070 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-05 00:40:55,070 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:55,070 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:55,073 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:40:55,076 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:40:55,076 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:40:55,079 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:40:55,082 [ scc.git] DEBUG Already up to date.
2025-08-05 00:40:55,082 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-05 00:40:55,378 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-05 00:40:55,378 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-05 00:40:55,383 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:40:55,383 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:55,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:55,385 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-05 00:40:55,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:55,391 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-05 00:40:55,400 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG Auto-merging setup.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-05 00:40:55,400 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:40:55,400 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:40:55,403 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-05 00:40:55,407 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-05 00:40:55,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:55,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:40:55,620 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-05 00:40:55,623 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-05 00:40:55,627 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- setup.py
- omero_signup/signup_settings.py
- omero_signup/views.py
--conflicts
2025-08-05 00:40:55,629 [ scc.config] DEBUG Found github.token
2025-08-05 00:40:55,629 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-05 00:40:55,629 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:40:55,671 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:40:55,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:40:55,674 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:40:55,713 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:40:55,717 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738be1c7d0> has no local changes
2025-08-05 00:40:55,717 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:40:55,724 [ scc.git] DEBUG [detached HEAD 6307e2e] merge master -Dorg -Ssuccess-only
2025-08-05 00:40:55,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:40:55,724 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:40:55,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:56,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-05 00:40:56,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:56,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-05 00:40:56,994 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:57,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-05 00:40:57,576 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:57,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:40:58,066 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:58,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:40:58,583 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:58,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-05 00:40:59,185 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:59,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:40:59,391 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-05 00:40:59,642 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:40:59,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-05 00:41:00,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:00,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-05 00:41:00,645 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:00,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-05 00:41:01,209 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:01,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:01,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:01,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:41:02,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:02,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-05 00:41:02,790 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:03,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-05 00:41:03,259 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:03,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-05 00:41:03,728 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:03,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-05 00:41:04,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:04,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-05 00:41:04,757 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:04,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:05,249 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:05,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-05 00:41:05,785 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:06,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:41:06,003 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-05 00:41:06,003 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:06,003 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-05 00:41:06,003 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:06,003 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:06,007 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:06,009 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:06,009 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:06,012 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:06,016 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:06,016 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-05 00:41:06,321 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-05 00:41:06,321 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-05 00:41:06,325 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-05 00:41:06,607 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-05 00:41:06,608 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-05 00:41:06,612 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:06,613 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:06,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:06,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-05 00:41:06,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:06,622 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-05 00:41:06,634 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-05 00:41:06,638 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-05 00:41:06,639 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-05 00:41:06,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:06,639 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-05 00:41:06,640 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-05 00:41:06,640 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-05 00:41:06,640 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-05 00:41:06,641 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-05 00:41:06,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:06,889 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-05 00:41:06,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:06,896 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-05 00:41:06,906 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:41:06,909 [ scc.git] DEBUG docker | 1 +
2025-08-05 00:41:06,909 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-05 00:41:07,140 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:07,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:07,319 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:07,359 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:07,359 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:07,361 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:07,400 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:07,405 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738844e190> has no local changes
2025-08-05 00:41:07,405 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:07,411 [ scc.git] DEBUG [detached HEAD ead89c1] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:07,411 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:07,411 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:07,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:07,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-05 00:41:07,802 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:07,802 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-05 00:41:07,802 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:07,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:07,806 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:07,808 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:07,808 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:07,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:07,814 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:07,814 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:07,814 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:07,814 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:07,817 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:07,857 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:07,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:07,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:07,900 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:07,904 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f73884885d0> has no local changes
2025-08-05 00:41:07,904 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:07,910 [ scc.git] DEBUG [detached HEAD 37e05e7] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:07,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:07,910 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:08,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:08,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-05 00:41:08,259 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:08,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-05 00:41:08,259 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:08,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:08,262 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:08,264 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:08,264 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:08,267 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:08,275 [ scc.git] DEBUG Updating deab817..160d894
2025-08-05 00:41:08,510 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:09,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-05 00:41:09,032 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:09,032 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:09,032 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:09,035 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:09,077 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:09,077 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:09,079 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:09,119 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:09,123 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738841a1d0> has no local changes
2025-08-05 00:41:09,123 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:09,129 [ scc.git] DEBUG [detached HEAD 7dc6982] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:09,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:09,129 [ scc.git] INFO Overriding base-branch from master to main
2025-08-05 00:41:09,129 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:09,282 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:09,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-05 00:41:09,875 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:10,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-05 00:41:10,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:10,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-05 00:41:10,877 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:11,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-05 00:41:11,437 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:11,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:11,923 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:12,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:41:12,536 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:12,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-05 00:41:13,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:13,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-05 00:41:13,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:13,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-05 00:41:14,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:14,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-05 00:41:14,682 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:14,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:15,158 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:15,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-05 00:41:15,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:15,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:41:15,903 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-05 00:41:15,903 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:15,903 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-05 00:41:15,903 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:15,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:15,906 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-05 00:41:15,909 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:15,909 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-05 00:41:15,912 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-05 00:41:15,915 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:15,915 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-05 00:41:16,199 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-05 00:41:16,199 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-05 00:41:16,203 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:16,203 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:16,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,205 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-05 00:41:16,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,211 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-05 00:41:16,218 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-05 00:41:16,218 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-05 00:41:16,219 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:41:16,219 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:41:16,222 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-05 00:41:16,226 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-05 00:41:16,227 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:16,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:16,400 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-05 00:41:16,404 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-05 00:41:16,407 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-05 00:41:16,409 [ scc.config] DEBUG Found github.token
2025-08-05 00:41:16,409 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-05 00:41:16,409 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:16,449 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:16,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,452 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:16,490 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:16,493 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738844fb50> has no local changes
2025-08-05 00:41:16,493 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:16,500 [ scc.git] DEBUG [detached HEAD 1c4c438] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:16,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:16,500 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:16,651 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:16,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-05 00:41:16,859 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:16,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-05 00:41:16,859 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:16,859 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,861 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:16,864 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:16,864 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:16,867 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:16,870 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:16,870 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:16,870 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:16,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,872 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:16,912 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:16,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:16,914 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:16,952 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:16,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738bd40390> has no local changes
2025-08-05 00:41:16,955 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:16,962 [ scc.git] DEBUG [detached HEAD a3a5e1d] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:16,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:16,962 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:17,110 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:17,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-05 00:41:17,333 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:17,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-05 00:41:17,334 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:17,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:17,336 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:17,338 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:17,338 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:17,341 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:17,344 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:17,344 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:17,344 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:17,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:17,346 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:17,385 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:17,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:17,387 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:17,425 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:17,428 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738843be10> has no local changes
2025-08-05 00:41:17,429 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:17,435 [ scc.git] DEBUG [detached HEAD ff04bac] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:17,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:17,435 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:17,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:17,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-05 00:41:18,101 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:18,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-05 00:41:18,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:18,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-05 00:41:19,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:19,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-05 00:41:19,700 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:19,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:20,183 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:20,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-05 00:41:20,704 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:20,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:41:20,910 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-05 00:41:20,910 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:20,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-05 00:41:20,910 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:20,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:20,913 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-05 00:41:20,915 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:20,915 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-05 00:41:20,918 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-05 00:41:20,921 [ scc.git] DEBUG Already up to date.
2025-08-05 00:41:20,921 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-05 00:41:21,214 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-05 00:41:21,214 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-05 00:41:21,218 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:21,218 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:21,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:21,220 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-05 00:41:21,223 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:21,225 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-05 00:41:21,234 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-05 00:41:21,234 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-05 00:41:21,234 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:41:21,234 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:41:21,237 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-05 00:41:21,242 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-05 00:41:21,244 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:21,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:21,438 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-05 00:41:21,440 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-05 00:41:21,443 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-05 00:41:21,445 [ scc.config] DEBUG Found github.token
2025-08-05 00:41:21,445 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-05 00:41:21,445 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:21,486 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:21,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:21,488 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:21,526 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:21,530 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f73884a0350> has no local changes
2025-08-05 00:41:21,530 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:21,537 [ scc.git] DEBUG [detached HEAD 351a45b] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:21,537 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:21,537 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-05 00:41:21,537 [ scc.repo] DEBUG ## PRs found:
2025-08-05 00:41:21,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:22,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-05 00:41:22,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:22,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-05 00:41:22,836 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:23,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-05 00:41:23,320 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:23,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-05 00:41:23,838 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:24,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:24,343 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:24,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-05 00:41:24,828 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:25,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-05 00:41:25,295 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:25,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:41:25,499 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-05 00:41:25,750 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:26,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-05 00:41:26,274 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:26,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-05 00:41:26,774 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:27,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-05 00:41:27,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:27,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-05 00:41:27,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:28,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-05 00:41:28,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:28,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-05 00:41:28,561 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-05 00:41:28,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:29,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-05 00:41:29,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:29,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-05 00:41:29,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:30,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-05 00:41:30,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:30,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-05 00:41:30,554 [ scc.repo] DEBUG ## Branches found:
2025-08-05 00:41:30,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-05 00:41:30,555 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:30,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:30,557 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-05 00:41:30,560 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-05 00:41:30,560 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-05 00:41:30,563 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-05 00:41:30,574 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-05 00:41:30,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:31,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-05 00:41:31,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:31,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-05 00:41:31,964 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-05 00:41:32,260 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-05 00:41:32,261 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-05 00:41:32,265 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-05 00:41:32,568 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-05 00:41:32,568 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-05 00:41:32,573 [ scc.git] DEBUG ## Unique users: []
2025-08-05 00:41:32,573 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:32,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:32,575 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-05 00:41:32,581 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:32,583 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-05 00:41:32,594 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-05 00:41:32,595 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-05 00:41:32,595 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-05 00:41:32,598 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-05 00:41:32,602 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-05 00:41:32,603 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:32,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:32,784 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-05 00:41:32,789 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-05 00:41:32,794 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#495](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-05 00:41:32,796 [ scc.config] DEBUG Found github.token
2025-08-05 00:41:32,796 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-05 00:41:32,796 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-05 00:41:32,801 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:32,803 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-05 00:41:32,813 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-05 00:41:32,816 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-05 00:41:32,816 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-05 00:41:33,035 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:33,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:33,208 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-05 00:41:33,250 [ scc.git] DEBUG Get sha1 of %s
2025-08-05 00:41:33,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-05 00:41:33,252 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:33,292 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:33,296 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738be3ed10> has no local changes
2025-08-05 00:41:33,296 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:33,303 [ scc.git] DEBUG [detached HEAD 009bc6c] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:33,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:33,303 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-05 00:41:33,380 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-05 00:41:33,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:33,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:33,632 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-05 00:41:33,634 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-05 00:41:33,878 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:34,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:34,088 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-05 00:41:34,091 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-05 00:41:34,334 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:34,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:34,525 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-05 00:41:34,527 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-05 00:41:34,771 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:34,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:34,965 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-05 00:41:35,210 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:35,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:35,397 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-05 00:41:35,400 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-05 00:41:35,643 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:35,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:35,819 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-05 00:41:35,822 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-05 00:41:36,066 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:36,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:36,255 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-05 00:41:36,257 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-05 00:41:36,501 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:36,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:36,709 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-05 00:41:36,711 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-05 00:41:36,956 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:37,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:37,160 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-05 00:41:37,162 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-05 00:41:37,406 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:37,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:37,609 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-05 00:41:37,611 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-05 00:41:37,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:38,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:38,083 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-05 00:41:38,085 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-05 00:41:38,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:38,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:38,533 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-05 00:41:38,535 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-05 00:41:38,780 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:38,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:38,964 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-05 00:41:39,209 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:39,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:39,422 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-05 00:41:39,667 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:39,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:39,842 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-05 00:41:39,844 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-05 00:41:40,089 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:40,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:40,323 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-05 00:41:40,567 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:40,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:40,752 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-05 00:41:40,996 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:41,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:41,188 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-05 00:41:41,190 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-05 00:41:41,435 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:41,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:41,668 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-05 00:41:41,670 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-05 00:41:41,915 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:42,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:42,095 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-05 00:41:42,097 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-05 00:41:42,342 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:42,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:42,521 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-05 00:41:42,522 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-05 00:41:42,767 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-05 00:41:42,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-05 00:41:42,948 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-05 00:41:42,949 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-05 00:41:43,038 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f738bd2aa10> has local changes
2025-08-05 00:41:43,038 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#495 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/495/)'
2025-08-05 00:41:43,052 [ scc.git] DEBUG [detached HEAD c2891e2] merge master -Dorg -Ssuccess-only
2025-08-05 00:41:43,052 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-05 00:41:43,052 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-05 00:41:43,052 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,052 [ scc.merge] INFO
2025-08-05 00:41:43,052 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,052 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-05 00:41:43,052 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-05 00:41:43,052 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-05 00:41:43,052 [ scc.merge] INFO
2025-08-05 00:41:43,052 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-05 00:41:43,053 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-05 00:41:43,053 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-05 00:41:43,053 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-05 00:41:43,053 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-05 00:41:43,053 [ scc.merge] INFO
2025-08-05 00:41:43,053 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-05 00:41:43,053 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-05 00:41:43,053 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-05 00:41:43,053 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-05 00:41:43,053 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-05 00:41:43,054 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-05 00:41:43,054 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-05 00:41:43,054 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-05 00:41:43,054 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,054 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,054 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-05 00:41:43,054 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,054 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-05 00:41:43,055 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-05 00:41:43,055 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-05 00:41:43,055 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-05 00:41:43,055 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-05 00:41:43,055 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,055 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-05 00:41:43,055 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,055 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-05 00:41:43,056 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-05 00:41:43,056 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-05 00:41:43,056 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-05 00:41:43,056 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-05 00:41:43,056 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-05 00:41:43,056 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-05 00:41:43,056 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-05 00:41:43,056 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,056 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,056 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-05 00:41:43,056 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-05 00:41:43,057 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-05 00:41:43,057 [ scc.merge] INFO Updating deab817..160d894
2025-08-05 00:41:43,057 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-05 00:41:43,057 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,057 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO
2025-08-05 00:41:43,057 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-05 00:41:43,057 [ scc.merge] INFO Already up to date.
2025-08-05 00:41:43,058 [ scc.merge] INFO
2025-08-05 00:41:43,058 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-05 00:41:43,058 [ scc.merge] INFO
2025-08-05 00:41:43,058 [ scc.merge] INFO Repository: ome/scripts
2025-08-05 00:41:43,058 [ scc.merge] INFO Excluded PRs:
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-05 00:41:43,058 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-05 00:41:43,058 [ scc.merge] INFO Previously merged:
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-05 00:41:43,058 [ scc.merge] INFO
2025-08-05 00:41:43,058 [ scc.merge] INFO Merged PRs:
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-05 00:41:43,058 [ scc.merge] INFO
2025-08-05 00:41:43,058 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-05 00:41:43,058 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-05 00:41:43,058 [ scc.merge] INFO
2025-08-05 00:41:43,058 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-05 00:41:43,058 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,060 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-05 00:41:43,060 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-05 00:41:43,063 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-05 00:41:43,065 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-05 00:41:43,067 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-05 00:41:43,069 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-05 00:41:43,072 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-05 00:41:43,074 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-05 00:41:43,076 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-05 00:41:43,078 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-05 00:41:43,081 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-05 00:41:43,083 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-05 00:41:43,085 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-05 00:41:43,088 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-05 00:41:43,090 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-05 00:41:43,092 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-05 00:41:43,094 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-05 00:41:43,097 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-05 00:41:43,099 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-05 00:41:43,101 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,103 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,103 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-05 00:41:43,103 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-05 00:41:43,106 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-05 00:41:43,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-05 00:41:43,108 [ scc.git] DEBUG Calling 'git remote'
2025-08-05 00:41:43,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 1578c45] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 1a7efaa] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-05 00:42:31,695 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-05 00:42:42,722 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-05 00:42:45,321 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-05 00:42:50,437 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-05 00:43:33,590 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
