Skipping 223 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-06 01:02:46,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-06 01:02:46,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:46,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:02:47,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:47,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-06 01:02:47,809 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:48,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:02:48,011 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:02:48,262 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:48,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-06 01:02:48,759 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:49,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-06 01:02:49,373 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:49,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-06 01:02:49,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:50,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:02:50,463 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:50,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-06 01:02:50,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:51,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:02:51,135 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-06 01:02:51,136 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:02:51,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-06 01:02:51,136 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:02:51,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:51,139 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:02:51,141 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:02:51,141 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:02:51,144 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:02:51,147 [ scc.git] DEBUG Already up to date.
2025-08-06 01:02:51,147 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-06 01:02:51,679 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-06 01:02:51,679 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-06 01:02:51,683 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-06 01:02:51,958 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-06 01:02:51,958 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-06 01:02:51,963 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:02:51,963 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:02:51,963 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:51,965 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-06 01:02:51,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:51,972 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-06 01:02:51,996 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:02:51,999 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-06 01:02:51,999 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-06 01:02:51,999 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-06 01:02:51,999 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-06 01:02:51,999 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-06 01:02:51,999 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-06 01:02:52,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:52,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:02:52,171 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-06 01:02:52,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:52,178 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-06 01:02:52,187 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:02:52,191 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-06 01:02:52,191 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-06 01:02:52,422 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:52,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:02:52,587 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:02:52,628 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:02:52,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:52,631 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:02:52,671 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:02:52,675 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae2d84d0> has no local changes
2025-08-06 01:02:52,675 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:02:52,682 [ scc.git] DEBUG [detached HEAD 8bb1e51] merge master -Dorg -Ssuccess-only
2025-08-06 01:02:52,683 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:02:52,683 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:02:52,838 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:53,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-06 01:02:53,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:53,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-06 01:02:53,905 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:54,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-06 01:02:54,400 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:54,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-06 01:02:54,951 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:55,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:02:55,444 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:55,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-06 01:02:55,924 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:56,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:02:56,124 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-06 01:02:56,375 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:56,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-06 01:02:56,870 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:57,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-06 01:02:57,365 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:57,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-06 01:02:57,947 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:58,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:02:58,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:58,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-06 01:02:59,002 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:59,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:02:59,257 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-06 01:02:59,257 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:02:59,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-06 01:02:59,258 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:02:59,258 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:02:59,260 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:02:59,263 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:02:59,263 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:02:59,266 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:02:59,274 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-06 01:02:59,509 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:02:59,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-06 01:02:59,956 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-06 01:03:00,920 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-06 01:03:00,921 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-06 01:03:00,925 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-06 01:03:01,491 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-06 01:03:01,491 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-06 01:03:01,496 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:01,496 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:01,496 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:01,498 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-06 01:03:01,503 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:01,506 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-06 01:03:01,890 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-06 01:03:01,890 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-06 01:03:01,890 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-06 01:03:01,890 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-06 01:03:01,890 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:03:01,891 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:03:01,893 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-06 01:03:01,898 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-06 01:03:01,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:02,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:02,093 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-06 01:03:02,098 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-06 01:03:02,101 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-08-06 01:03:02,103 [ scc.config] DEBUG Found github.token
2025-08-06 01:03:02,103 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-06 01:03:02,104 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-06 01:03:02,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:02,110 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-06 01:03:02,332 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-06 01:03:02,332 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-06 01:03:02,332 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-06 01:03:02,332 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:03:02,332 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:03:02,335 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-06 01:03:02,340 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-06 01:03:02,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:02,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:02,521 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-06 01:03:02,525 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-06 01:03:02,528 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-06 01:03:02,531 [ scc.config] DEBUG Found github.token
2025-08-06 01:03:02,531 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-06 01:03:02,531 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:02,573 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:02,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:02,575 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:02,615 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:02,619 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae2e8310> has no local changes
2025-08-06 01:03:02,620 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:02,627 [ scc.git] DEBUG [detached HEAD 462e8ac] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:02,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:02,627 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:02,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:03,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-06 01:03:03,401 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:03,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-06 01:03:03,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:04,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-06 01:03:04,483 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:04,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:05,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:05,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:05,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:05,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-06 01:03:06,064 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:06,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:06,266 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:03:06,517 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:06,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-06 01:03:06,780 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-06 01:03:07,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:07,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-06 01:03:07,627 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:07,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:08,142 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:08,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:08,678 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:09,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-06 01:03:09,266 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:09,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:09,466 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-06 01:03:09,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:09,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-06 01:03:09,952 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-06 01:03:10,203 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:10,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-06 01:03:10,703 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:10,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:11,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:11,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:11,799 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:12,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-06 01:03:12,265 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:12,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:12,481 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-06 01:03:12,732 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:13,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-06 01:03:13,281 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:13,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-06 01:03:13,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:14,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-06 01:03:14,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:14,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-06 01:03:14,850 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:15,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-06 01:03:15,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:15,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-06 01:03:15,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:16,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-06 01:03:16,089 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:16,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-06 01:03:16,089 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:16,089 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:16,092 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:16,095 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:16,095 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:16,098 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:16,101 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:16,101 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-06 01:03:16,380 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-06 01:03:16,381 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-06 01:03:16,385 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-06 01:03:16,661 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-06 01:03:16,661 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-06 01:03:16,665 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-06 01:03:17,008 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-06 01:03:17,008 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-06 01:03:17,012 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:17,012 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:17,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:17,015 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-06 01:03:17,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:17,066 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-06 01:03:17,125 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:17,129 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-06 01:03:17,129 [ scc.git] DEBUG package.json | 2 +-
2025-08-06 01:03:17,129 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-06 01:03:17,130 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:17,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:17,322 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-06 01:03:17,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:17,382 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-06 01:03:17,564 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-06 01:03:17,564 [ scc.git] DEBUG Auto-merging package.json
2025-08-06 01:03:17,565 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:17,569 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-06 01:03:17,569 [ scc.git] DEBUG package.json | 2 +-
2025-08-06 01:03:17,569 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-06 01:03:17,573 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:17,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:17,760 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-06 01:03:17,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:17,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-06 01:03:17,775 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:17,779 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-06 01:03:17,779 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-06 01:03:18,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:18,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:18,215 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:18,256 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:18,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:18,259 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:18,299 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:18,303 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae313ed0> has no local changes
2025-08-06 01:03:18,303 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:18,310 [ scc.git] DEBUG [detached HEAD cebff3f] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:18,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:18,310 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:18,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:18,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-06 01:03:18,660 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:18,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-06 01:03:18,660 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:18,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:18,663 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:18,665 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:18,665 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:18,668 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:18,671 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:18,671 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:18,671 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:18,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:18,673 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:18,713 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:18,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:18,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:18,753 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:18,756 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae2cf210> has no local changes
2025-08-06 01:03:18,756 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:18,762 [ scc.git] DEBUG [detached HEAD 5d5b7e9] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:18,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:18,763 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:18,911 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:19,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-06 01:03:19,425 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:19,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-06 01:03:19,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:20,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-06 01:03:20,453 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:20,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-06 01:03:20,990 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:21,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:21,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:21,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:21,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:22,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-06 01:03:22,655 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:22,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:23,121 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:23,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-06 01:03:23,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:23,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-06 01:03:23,845 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-06 01:03:24,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:24,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-06 01:03:24,368 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:24,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-06 01:03:24,368 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:24,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:24,371 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:24,373 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:24,373 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:24,376 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:24,379 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:24,379 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-06 01:03:25,462 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-06 01:03:25,462 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-06 01:03:25,466 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:25,466 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:25,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:25,469 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-06 01:03:25,472 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:25,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-06 01:03:25,482 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:25,485 [ scc.git] DEBUG setup.py | 4 +-
2025-08-06 01:03:25,485 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-06 01:03:25,485 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-06 01:03:25,485 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-06 01:03:25,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:25,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:25,665 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:25,707 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:25,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:25,709 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:25,750 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:25,754 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac12f150> has no local changes
2025-08-06 01:03:25,754 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:25,760 [ scc.git] DEBUG [detached HEAD 465620f] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:25,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:25,761 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:25,916 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:26,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-06 01:03:26,427 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:26,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-06 01:03:26,909 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:27,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-06 01:03:27,381 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:27,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-06 01:03:27,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:28,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:28,443 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:28,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-06 01:03:29,044 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:29,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:29,238 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-06 01:03:29,238 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:29,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-06 01:03:29,238 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:29,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:29,241 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:29,243 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:29,243 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:29,246 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:29,249 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:29,249 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-06 01:03:29,604 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-06 01:03:29,604 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-06 01:03:29,609 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:29,609 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:29,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:29,611 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-06 01:03:29,614 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:29,616 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-06 01:03:29,681 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-06 01:03:29,681 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG Auto-merging setup.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-06 01:03:29,682 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:03:29,682 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:03:29,685 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-06 01:03:29,689 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-06 01:03:29,691 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:29,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:29,857 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-06 01:03:29,861 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-06 01:03:29,864 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
--conflicts
2025-08-06 01:03:29,866 [ scc.config] DEBUG Found github.token
2025-08-06 01:03:29,866 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-06 01:03:29,866 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:29,907 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:29,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:29,909 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:29,948 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:29,951 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac1679d0> has no local changes
2025-08-06 01:03:29,951 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:29,958 [ scc.git] DEBUG [detached HEAD d413450] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:29,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:29,958 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:30,108 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:30,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-06 01:03:30,687 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:30,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-06 01:03:31,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:31,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-06 01:03:31,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:32,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:32,348 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:32,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:32,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:33,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-06 01:03:33,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:33,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:33,637 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-06 01:03:33,888 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:34,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-06 01:03:34,489 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:34,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-06 01:03:34,973 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:35,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-06 01:03:35,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:35,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:36,004 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:36,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:36,515 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:36,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-06 01:03:36,998 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:37,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-06 01:03:37,464 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:37,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-06 01:03:37,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:38,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-06 01:03:38,460 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:38,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-06 01:03:39,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:39,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:39,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:39,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-06 01:03:40,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:40,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:40,406 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-06 01:03:40,406 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:40,406 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-06 01:03:40,406 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:40,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:40,409 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:40,412 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:40,412 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:40,415 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:40,418 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:40,418 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-06 01:03:40,719 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-06 01:03:40,719 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-06 01:03:40,724 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-06 01:03:41,069 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-06 01:03:41,069 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-06 01:03:41,073 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:41,073 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:41,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:41,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-06 01:03:41,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:41,082 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-06 01:03:41,110 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-06 01:03:41,114 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-06 01:03:41,115 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-06 01:03:41,115 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-06 01:03:41,115 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-06 01:03:41,115 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-06 01:03:41,115 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-06 01:03:41,116 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-06 01:03:41,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:41,284 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-06 01:03:41,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:41,291 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-06 01:03:41,301 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:03:41,304 [ scc.git] DEBUG docker | 1 +
2025-08-06 01:03:41,304 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-06 01:03:41,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:41,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:41,702 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:41,743 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:41,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:41,746 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:41,784 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:41,788 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac163a10> has no local changes
2025-08-06 01:03:41,788 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:41,796 [ scc.git] DEBUG [detached HEAD 428a6cc] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:41,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:41,796 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:41,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:42,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-06 01:03:42,159 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:42,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-06 01:03:42,159 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:42,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:42,162 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:42,164 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:42,164 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:42,167 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:42,170 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:42,170 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:42,170 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:42,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:42,172 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:42,212 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:42,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:42,214 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:42,253 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:42,257 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac128610> has no local changes
2025-08-06 01:03:42,257 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:42,263 [ scc.git] DEBUG [detached HEAD 0b88864] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:42,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:42,263 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:42,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:42,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-06 01:03:42,615 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:42,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-06 01:03:42,615 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:42,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:42,618 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:42,620 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:42,620 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:42,623 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:42,631 [ scc.git] DEBUG Updating deab817..160d894
2025-08-06 01:03:42,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:43,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-06 01:03:43,283 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:43,283 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:43,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:43,285 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:43,326 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:43,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:43,329 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:43,367 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:43,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae344910> has no local changes
2025-08-06 01:03:43,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:43,377 [ scc.git] DEBUG [detached HEAD f0d0ead] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:43,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:43,377 [ scc.git] INFO Overriding base-branch from master to main
2025-08-06 01:03:43,377 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:43,533 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:43,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-06 01:03:44,085 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:44,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-06 01:03:44,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:44,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-06 01:03:45,078 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:45,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-06 01:03:45,660 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:45,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:46,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:46,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:46,690 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:46,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-06 01:03:47,179 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:47,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-06 01:03:47,683 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:47,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-06 01:03:48,183 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:48,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-06 01:03:48,769 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:48,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:49,225 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:49,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-06 01:03:49,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:50,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:50,007 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-06 01:03:50,007 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:50,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-06 01:03:50,007 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:50,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:50,010 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-06 01:03:50,012 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:50,013 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-06 01:03:50,016 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-06 01:03:50,019 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:50,019 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-06 01:03:50,441 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-06 01:03:50,441 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-06 01:03:50,445 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:50,445 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:50,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:50,448 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-06 01:03:50,451 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:50,453 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-06 01:03:50,635 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-06 01:03:50,635 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-06 01:03:50,636 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:03:50,636 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:03:50,639 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-06 01:03:50,643 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-06 01:03:50,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:50,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:50,827 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-06 01:03:50,830 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-06 01:03:50,833 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-06 01:03:50,835 [ scc.config] DEBUG Found github.token
2025-08-06 01:03:50,835 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-06 01:03:50,835 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:50,875 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:50,876 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:50,878 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:50,917 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:50,921 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac186790> has no local changes
2025-08-06 01:03:50,921 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:50,928 [ scc.git] DEBUG [detached HEAD 50c952a] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:50,928 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:50,928 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:51,078 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:51,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-06 01:03:51,262 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:51,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-06 01:03:51,262 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,264 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:51,267 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:51,267 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:51,269 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:51,272 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:51,272 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:51,273 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,275 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:51,315 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,317 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:51,357 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:51,360 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae320b10> has no local changes
2025-08-06 01:03:51,360 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:51,366 [ scc.git] DEBUG [detached HEAD 33c271d] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:51,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:51,367 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:51,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:51,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-06 01:03:51,702 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:51,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-06 01:03:51,702 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,705 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:51,707 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:51,707 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:51,710 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:51,713 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:51,713 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:51,713 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,715 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:51,754 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:51,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:51,756 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:51,794 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:51,797 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac19d410> has no local changes
2025-08-06 01:03:51,797 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:51,803 [ scc.git] DEBUG [detached HEAD ed56842] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:51,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:51,804 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:51,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:52,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-06 01:03:52,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:52,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-06 01:03:53,085 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:53,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-06 01:03:53,551 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:53,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-06 01:03:54,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:54,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:54,577 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:54,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-06 01:03:55,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:55,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:03:55,295 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-06 01:03:55,295 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:03:55,295 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-06 01:03:55,295 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:55,295 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:55,298 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-06 01:03:55,300 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:03:55,300 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-06 01:03:55,303 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-06 01:03:55,306 [ scc.git] DEBUG Already up to date.
2025-08-06 01:03:55,306 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-06 01:03:55,726 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-06 01:03:55,726 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-06 01:03:55,730 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:03:55,731 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:55,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:55,733 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-06 01:03:55,736 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:55,738 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-06 01:03:55,866 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-06 01:03:55,866 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-06 01:03:55,867 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:03:55,867 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:03:55,870 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-06 01:03:55,874 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-06 01:03:55,876 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:56,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:03:56,050 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-06 01:03:56,053 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-06 01:03:56,055 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-06 01:03:56,058 [ scc.config] DEBUG Found github.token
2025-08-06 01:03:56,058 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-06 01:03:56,058 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:03:56,098 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:03:56,098 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:03:56,100 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:03:56,139 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:03:56,144 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ac1b7490> has no local changes
2025-08-06 01:03:56,144 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:03:56,150 [ scc.git] DEBUG [detached HEAD 55de0a1] merge master -Dorg -Ssuccess-only
2025-08-06 01:03:56,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:03:56,150 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-06 01:03:56,150 [ scc.repo] DEBUG ## PRs found:
2025-08-06 01:03:56,301 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:56,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-06 01:03:56,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:57,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-06 01:03:57,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:57,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-06 01:03:57,847 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:58,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-06 01:03:58,382 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:58,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:03:58,901 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:59,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-06 01:03:59,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:03:59,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-06 01:03:59,917 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:00,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:04:00,114 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-06 01:04:00,365 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:00,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-06 01:04:00,844 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:01,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-06 01:04:01,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:01,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-06 01:04:01,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:02,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-06 01:04:02,282 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:02,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-06 01:04:02,824 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:03,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-06 01:04:03,026 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-06 01:04:03,277 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:03,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-06 01:04:03,810 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:04,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-06 01:04:04,312 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:04,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-06 01:04:04,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:05,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-06 01:04:05,079 [ scc.repo] DEBUG ## Branches found:
2025-08-06 01:04:05,079 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-06 01:04:05,079 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:04:05,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:04:05,082 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-06 01:04:05,084 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-06 01:04:05,084 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-06 01:04:05,088 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-06 01:04:05,099 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-06 01:04:05,328 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:05,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-06 01:04:06,016 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:06,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-06 01:04:06,501 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-06 01:04:07,231 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-06 01:04:07,232 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-06 01:04:07,236 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-06 01:04:07,893 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-06 01:04:07,893 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-06 01:04:07,898 [ scc.git] DEBUG ## Unique users: []
2025-08-06 01:04:07,898 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:04:07,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:04:07,901 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-06 01:04:07,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:04:07,909 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-06 01:04:08,066 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-06 01:04:08,066 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-06 01:04:08,066 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-06 01:04:08,069 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-06 01:04:08,073 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-06 01:04:08,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:08,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:08,250 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-06 01:04:08,256 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-06 01:04:08,260 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#496](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-06 01:04:08,262 [ scc.config] DEBUG Found github.token
2025-08-06 01:04:08,262 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-06 01:04:08,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-06 01:04:08,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:04:08,269 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-06 01:04:08,280 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-06 01:04:08,283 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-06 01:04:08,283 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-06 01:04:08,501 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:08,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:08,705 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-06 01:04:08,746 [ scc.git] DEBUG Get sha1 of %s
2025-08-06 01:04:08,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-06 01:04:08,749 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:04:08,790 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:04:08,793 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae4eba90> has no local changes
2025-08-06 01:04:08,794 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:04:08,800 [ scc.git] DEBUG [detached HEAD 7d50649] merge master -Dorg -Ssuccess-only
2025-08-06 01:04:08,801 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:08,801 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-06 01:04:08,876 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-06 01:04:08,956 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:09,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:09,140 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-06 01:04:09,142 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-06 01:04:09,386 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:09,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:09,602 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-06 01:04:09,604 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-06 01:04:09,848 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:10,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:10,040 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-06 01:04:10,042 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-06 01:04:10,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:10,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:10,501 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-06 01:04:10,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:10,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:10,929 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-06 01:04:10,931 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-06 01:04:11,176 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:11,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:11,346 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-06 01:04:11,348 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-06 01:04:11,593 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:11,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:11,777 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-06 01:04:11,779 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-06 01:04:12,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:12,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:12,212 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-06 01:04:12,214 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-06 01:04:12,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:12,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:12,643 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-06 01:04:12,645 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-06 01:04:12,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:13,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:13,092 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-06 01:04:13,094 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-06 01:04:13,338 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:13,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:13,519 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-06 01:04:13,521 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-06 01:04:13,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:13,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:13,950 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-06 01:04:13,952 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-06 01:04:14,196 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:14,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:14,370 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-06 01:04:14,614 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:14,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:14,783 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-06 01:04:15,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:15,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:15,232 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-06 01:04:15,234 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-06 01:04:15,478 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:15,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:15,674 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-06 01:04:15,919 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:16,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:16,111 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-06 01:04:16,356 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:16,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:16,539 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-06 01:04:16,541 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-06 01:04:16,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:16,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:16,958 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-06 01:04:16,959 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-06 01:04:17,204 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:17,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:17,392 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-06 01:04:17,394 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-06 01:04:17,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:17,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:17,817 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-06 01:04:17,819 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-06 01:04:18,063 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-06 01:04:18,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-06 01:04:18,237 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-06 01:04:18,237 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-06 01:04:18,333 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f81ae3546d0> has local changes
2025-08-06 01:04:18,333 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#496 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/496/)'
2025-08-06 01:04:18,346 [ scc.git] DEBUG [detached HEAD 6fe0696] merge master -Dorg -Ssuccess-only
2025-08-06 01:04:18,346 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-06 01:04:18,346 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-06 01:04:18,346 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,346 [ scc.merge] INFO
2025-08-06 01:04:18,346 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-06 01:04:18,347 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-06 01:04:18,347 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-06 01:04:18,347 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-06 01:04:18,347 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-06 01:04:18,347 [ scc.merge] INFO
2025-08-06 01:04:18,347 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-06 01:04:18,347 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-06 01:04:18,347 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-06 01:04:18,347 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,347 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-06 01:04:18,348 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-06 01:04:18,348 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-06 01:04:18,348 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-06 01:04:18,348 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,348 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,348 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-06 01:04:18,348 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-06 01:04:18,349 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-06 01:04:18,349 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-06 01:04:18,349 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-06 01:04:18,349 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-06 01:04:18,349 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,349 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-06 01:04:18,349 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,349 [ scc.merge] INFO
2025-08-06 01:04:18,349 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-06 01:04:18,350 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-06 01:04:18,350 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-06 01:04:18,350 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-06 01:04:18,350 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-06 01:04:18,350 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-06 01:04:18,350 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-06 01:04:18,350 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,350 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,350 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-06 01:04:18,350 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,350 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-06 01:04:18,351 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-06 01:04:18,351 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-06 01:04:18,351 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-06 01:04:18,351 [ scc.merge] INFO Updating deab817..160d894
2025-08-06 01:04:18,351 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-06 01:04:18,351 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-06 01:04:18,351 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,351 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-06 01:04:18,351 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,351 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-06 01:04:18,351 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,351 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-06 01:04:18,352 [ scc.merge] INFO Already up to date.
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO Repository: ome/scripts
2025-08-06 01:04:18,352 [ scc.merge] INFO Excluded PRs:
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-06 01:04:18,352 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-06 01:04:18,352 [ scc.merge] INFO Previously merged:
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO Merged PRs:
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-06 01:04:18,352 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-06 01:04:18,352 [ scc.merge] INFO
2025-08-06 01:04:18,352 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-06 01:04:18,352 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-06 01:04:18,354 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,356 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-06 01:04:18,357 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-06 01:04:18,359 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-06 01:04:18,361 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,363 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,363 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-06 01:04:18,363 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-06 01:04:18,366 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-06 01:04:18,368 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-06 01:04:18,370 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-06 01:04:18,373 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-06 01:04:18,375 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-06 01:04:18,377 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-06 01:04:18,379 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-06 01:04:18,382 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-06 01:04:18,384 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-06 01:04:18,386 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-06 01:04:18,388 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-06 01:04:18,390 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,393 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,393 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-06 01:04:18,393 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-06 01:04:18,395 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-06 01:04:18,397 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,399 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,399 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-06 01:04:18,399 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,401 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-06 01:04:18,401 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-06 01:04:18,401 [ scc.git] DEBUG Calling 'git remote'
2025-08-06 01:04:18,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 0b72890] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 7e259a6] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-06 01:05:06,951 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-06 01:05:17,153 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-06 01:05:19,759 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-06 01:05:24,801 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-06 01:06:07,894 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
