Skipping 223 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-08 00:49:37,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-08 00:49:38,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:38,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:38,729 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:39,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-08 00:49:39,270 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:39,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:39,461 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:49:39,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:39,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-08 00:49:40,219 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:40,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-08 00:49:40,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:41,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-08 00:49:41,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:41,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:41,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:42,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-08 00:49:42,333 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:42,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:42,527 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-08 00:49:42,527 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:49:42,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-08 00:49:42,528 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:42,528 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:42,530 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:49:42,533 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:49:42,533 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:49:42,536 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:49:42,539 [ scc.git] DEBUG Already up to date.
2025-08-08 00:49:42,539 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-08 00:49:42,813 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-08 00:49:42,813 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-08 00:49:42,818 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-08 00:49:43,099 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-08 00:49:43,099 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-08 00:49:43,104 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:49:43,104 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:43,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:43,106 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-08 00:49:43,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:43,112 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-08 00:49:43,122 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:49:43,125 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-08 00:49:43,125 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-08 00:49:43,125 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-08 00:49:43,125 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-08 00:49:43,125 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-08 00:49:43,125 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-08 00:49:43,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:43,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:49:43,307 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-08 00:49:43,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:43,313 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-08 00:49:43,323 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:49:43,326 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-08 00:49:43,326 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-08 00:49:43,558 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:43,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:49:43,746 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:49:43,787 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:43,788 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:43,790 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:49:43,830 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:49:43,834 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a451ce90> has no local changes
2025-08-08 00:49:43,834 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:49:43,841 [ scc.git] DEBUG [detached HEAD d54553e] merge master -Dorg -Ssuccess-only
2025-08-08 00:49:43,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:49:43,841 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:49:43,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:44,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-08 00:49:44,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:44,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-08 00:49:45,090 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:45,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-08 00:49:45,614 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:45,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-08 00:49:46,149 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:46,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:46,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:46,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-08 00:49:47,137 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:47,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:47,351 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-08 00:49:47,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:47,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-08 00:49:48,118 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:48,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-08 00:49:48,601 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:48,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-08 00:49:49,177 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:49,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:49,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:49,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-08 00:49:50,176 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:50,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:50,394 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-08 00:49:50,394 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:49:50,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-08 00:49:50,394 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:50,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:50,397 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:49:50,399 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:49:50,399 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:49:50,402 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:49:50,410 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-08 00:49:50,645 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:51,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-08 00:49:51,074 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-08 00:49:51,358 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-08 00:49:51,358 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-08 00:49:51,362 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-08 00:49:51,635 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-08 00:49:51,635 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-08 00:49:51,640 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:49:51,640 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:51,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:51,642 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-08 00:49:51,647 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:51,649 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-08 00:49:51,662 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-08 00:49:51,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-08 00:49:51,663 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-08 00:49:51,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-08 00:49:51,663 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:49:51,663 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:49:51,666 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-08 00:49:51,671 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-08 00:49:51,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:51,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:49:51,850 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-08 00:49:51,855 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-08 00:49:51,858 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-08 00:49:51,860 [ scc.config] DEBUG Found github.token
2025-08-08 00:49:51,860 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-08 00:49:51,860 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-08 00:49:51,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:51,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-08 00:49:51,882 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-08 00:49:51,882 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-08 00:49:51,882 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-08 00:49:51,883 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:49:51,883 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:49:51,886 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-08 00:49:51,891 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-08 00:49:52,101 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:52,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:49:52,281 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-08 00:49:52,286 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-08 00:49:52,289 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-08 00:49:52,291 [ scc.config] DEBUG Found github.token
2025-08-08 00:49:52,291 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-08 00:49:52,291 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:49:52,334 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:49:52,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:49:52,336 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:49:52,376 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:49:52,380 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a451fa90> has no local changes
2025-08-08 00:49:52,380 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:49:52,386 [ scc.git] DEBUG [detached HEAD 2b070ae] merge master -Dorg -Ssuccess-only
2025-08-08 00:49:52,387 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:49:52,387 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:49:52,532 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:52,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-08 00:49:53,135 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:53,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-08 00:49:53,630 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:53,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-08 00:49:54,190 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:54,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:54,702 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:55,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:49:55,259 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:55,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-08 00:49:55,795 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:56,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:56,001 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:49:56,252 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:56,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-08 00:49:56,487 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-08 00:49:56,738 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:57,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-08 00:49:57,343 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:57,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:49:57,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:58,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:49:58,439 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:58,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-08 00:49:58,971 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:59,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:49:59,182 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-08 00:49:59,433 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:49:59,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-08 00:49:59,689 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-08 00:49:59,940 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:00,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-08 00:50:00,573 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:00,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:01,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:01,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:01,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:01,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-08 00:50:02,156 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:02,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:02,397 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-08 00:50:02,648 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:02,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-08 00:50:03,150 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:03,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-08 00:50:03,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:03,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-08 00:50:04,191 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:04,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-08 00:50:04,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:04,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-08 00:50:05,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:05,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-08 00:50:05,677 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:05,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-08 00:50:05,913 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:05,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-08 00:50:05,913 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:05,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:05,916 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:05,918 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:05,918 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:05,921 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:05,924 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:05,924 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-08 00:50:06,202 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-08 00:50:06,202 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-08 00:50:06,206 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-08 00:50:06,481 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-08 00:50:06,481 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-08 00:50:06,485 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-08 00:50:06,759 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-08 00:50:06,759 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-08 00:50:06,763 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:06,763 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:06,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:06,766 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-08 00:50:06,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:06,771 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-08 00:50:06,779 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:06,783 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-08 00:50:06,783 [ scc.git] DEBUG package.json | 2 +-
2025-08-08 00:50:06,783 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-08 00:50:06,784 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:06,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:06,972 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-08 00:50:06,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:06,977 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-08 00:50:06,988 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-08 00:50:06,988 [ scc.git] DEBUG Auto-merging package.json
2025-08-08 00:50:06,989 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:06,992 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-08 00:50:06,992 [ scc.git] DEBUG package.json | 2 +-
2025-08-08 00:50:06,992 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-08 00:50:07,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:07,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:07,409 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-08 00:50:07,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:07,415 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-08 00:50:07,424 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:07,427 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-08 00:50:07,427 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-08 00:50:07,660 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:07,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:07,854 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:07,895 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:07,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:07,897 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:07,936 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:07,940 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a4535a50> has no local changes
2025-08-08 00:50:07,940 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:07,947 [ scc.git] DEBUG [detached HEAD 43a5a27] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:07,947 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:07,947 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:08,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:08,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-08 00:50:08,322 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:08,322 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-08 00:50:08,322 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:08,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:08,325 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:08,327 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:08,327 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:08,330 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:08,333 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:08,333 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:08,333 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:08,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:08,335 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:08,376 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:08,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:08,379 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:08,418 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:08,421 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6f58550> has no local changes
2025-08-08 00:50:08,421 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:08,427 [ scc.git] DEBUG [detached HEAD 030fc2d] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:08,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:08,428 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:08,573 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:08,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-08 00:50:09,151 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:09,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-08 00:50:09,703 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:09,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-08 00:50:10,193 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:10,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-08 00:50:10,820 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:11,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:11,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:11,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:11,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:12,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-08 00:50:12,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:12,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:12,927 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:13,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-08 00:50:13,394 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:13,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-08 00:50:13,633 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-08 00:50:13,884 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:14,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-08 00:50:14,123 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:14,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-08 00:50:14,123 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:14,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:14,126 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:14,129 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:14,129 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:14,132 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:14,135 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:14,135 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-08 00:50:14,414 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-08 00:50:14,414 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-08 00:50:14,418 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:14,418 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:14,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:14,420 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-08 00:50:14,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:14,426 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-08 00:50:14,434 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:14,438 [ scc.git] DEBUG setup.py | 4 +-
2025-08-08 00:50:14,438 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-08 00:50:14,438 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-08 00:50:14,438 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-08 00:50:14,439 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:14,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:14,627 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:14,671 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:14,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:14,673 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:14,714 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:14,718 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6f306d0> has no local changes
2025-08-08 00:50:14,718 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:14,724 [ scc.git] DEBUG [detached HEAD a64bab5] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:14,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:14,725 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:14,878 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:15,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-08 00:50:15,429 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:15,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-08 00:50:15,999 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:16,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-08 00:50:16,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:16,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-08 00:50:17,072 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:17,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:17,589 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:17,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-08 00:50:18,079 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:18,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:18,317 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-08 00:50:18,317 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:18,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-08 00:50:18,317 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:18,317 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:18,320 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:18,322 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:18,322 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:18,325 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:18,328 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:18,328 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-08 00:50:18,607 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-08 00:50:18,607 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-08 00:50:18,611 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:18,611 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:18,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:18,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-08 00:50:18,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:18,619 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-08 00:50:18,629 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG Auto-merging setup.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-08 00:50:18,629 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:50:18,629 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:50:18,632 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-08 00:50:18,637 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-08 00:50:18,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:18,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:18,835 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-08 00:50:18,838 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-08 00:50:18,842 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
- setup.py
--conflicts
2025-08-08 00:50:18,844 [ scc.config] DEBUG Found github.token
2025-08-08 00:50:18,844 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-08 00:50:18,844 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:18,887 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:18,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:18,889 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:18,932 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:18,936 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6e31950> has no local changes
2025-08-08 00:50:18,936 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:18,943 [ scc.git] DEBUG [detached HEAD c3345db] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:18,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:18,943 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:19,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:19,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-08 00:50:19,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:19,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-08 00:50:20,206 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:20,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-08 00:50:20,795 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:21,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:21,330 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:21,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:21,837 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:22,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-08 00:50:22,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:22,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:22,686 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-08 00:50:22,937 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:23,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-08 00:50:23,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:23,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-08 00:50:23,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:24,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-08 00:50:24,522 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:24,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:25,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:25,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:25,547 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:25,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-08 00:50:26,051 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:26,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-08 00:50:26,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:26,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-08 00:50:27,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:27,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-08 00:50:27,586 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:27,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-08 00:50:28,118 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:28,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:28,590 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:28,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-08 00:50:29,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:29,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:29,385 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-08 00:50:29,385 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:29,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-08 00:50:29,385 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:29,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:29,388 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:29,391 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:29,391 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:29,394 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:29,397 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:29,397 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-08 00:50:29,689 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-08 00:50:29,689 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-08 00:50:29,694 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-08 00:50:29,969 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-08 00:50:29,969 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-08 00:50:29,974 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:29,974 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:29,974 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:29,976 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-08 00:50:29,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:29,983 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-08 00:50:29,996 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:29,999 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-08 00:50:29,999 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-08 00:50:30,000 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-08 00:50:30,000 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-08 00:50:30,000 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-08 00:50:30,000 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-08 00:50:30,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-08 00:50:30,001 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-08 00:50:30,002 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-08 00:50:30,002 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-08 00:50:30,002 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-08 00:50:30,002 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-08 00:50:30,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:30,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-08 00:50:30,181 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:30,184 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-08 00:50:30,194 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:30,197 [ scc.git] DEBUG docker | 1 +
2025-08-08 00:50:30,197 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-08 00:50:30,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:30,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:30,609 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:30,650 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:30,650 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:30,652 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:30,692 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:30,695 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a455ef50> has no local changes
2025-08-08 00:50:30,695 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:30,702 [ scc.git] DEBUG [detached HEAD 8af91cf] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:30,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:30,702 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:30,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:31,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-08 00:50:31,052 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:31,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-08 00:50:31,052 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:31,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:31,054 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:31,056 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:31,057 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:31,060 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:31,063 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:31,063 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:31,063 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:31,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:31,065 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:31,105 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:31,105 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:31,108 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:31,149 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:31,152 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a452d590> has no local changes
2025-08-08 00:50:31,152 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:31,159 [ scc.git] DEBUG [detached HEAD cf1f865] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:31,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:31,159 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:31,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:31,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-08 00:50:31,543 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:31,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-08 00:50:31,544 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:31,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:31,546 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:31,548 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:31,548 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:31,551 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:31,560 [ scc.git] DEBUG Updating deab817..160d894
2025-08-08 00:50:31,795 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:32,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-08 00:50:32,269 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:32,270 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:32,270 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:32,272 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:32,312 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:32,312 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:32,315 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:32,355 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:32,359 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a457b950> has no local changes
2025-08-08 00:50:32,359 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:32,365 [ scc.git] DEBUG [detached HEAD 7158c5d] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:32,365 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:32,365 [ scc.git] INFO Overriding base-branch from master to main
2025-08-08 00:50:32,366 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:32,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:32,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-08 00:50:33,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:33,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-08 00:50:33,544 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:33,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-08 00:50:34,046 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:34,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-08 00:50:34,582 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:34,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:35,097 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:35,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:35,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:35,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-08 00:50:36,115 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:36,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-08 00:50:36,605 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:36,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-08 00:50:37,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:37,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-08 00:50:37,640 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:37,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:38,140 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:38,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-08 00:50:38,677 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:38,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:38,881 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-08 00:50:38,881 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:38,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-08 00:50:38,881 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:38,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:38,884 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-08 00:50:38,886 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:38,887 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-08 00:50:38,890 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-08 00:50:38,892 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:38,893 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-08 00:50:39,172 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-08 00:50:39,172 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-08 00:50:39,177 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:39,177 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:39,177 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,179 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-08 00:50:39,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,184 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-08 00:50:39,193 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-08 00:50:39,193 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-08 00:50:39,193 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:50:39,193 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:50:39,196 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-08 00:50:39,200 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-08 00:50:39,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:39,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:39,384 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-08 00:50:39,387 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-08 00:50:39,390 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-08 00:50:39,392 [ scc.config] DEBUG Found github.token
2025-08-08 00:50:39,392 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-08 00:50:39,392 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:39,433 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:39,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,435 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:39,476 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:39,480 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6f44ed0> has no local changes
2025-08-08 00:50:39,480 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:39,486 [ scc.git] DEBUG [detached HEAD e964673] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:39,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:39,487 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:39,635 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:39,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-08 00:50:39,878 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:39,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-08 00:50:39,878 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:39,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,880 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:39,883 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:39,883 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:39,886 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:39,889 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:39,889 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:39,889 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:39,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,891 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:39,932 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:39,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:39,934 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:39,975 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:39,978 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6f585d0> has no local changes
2025-08-08 00:50:39,978 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:39,984 [ scc.git] DEBUG [detached HEAD 8038790] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:39,985 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:39,985 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:40,129 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:40,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-08 00:50:40,345 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:40,345 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-08 00:50:40,345 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:40,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:40,348 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:40,350 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:40,350 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:40,353 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:40,356 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:40,356 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:40,356 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:40,356 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:40,359 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:40,397 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:40,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:40,399 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:40,438 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:40,441 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a453ee90> has no local changes
2025-08-08 00:50:40,441 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:40,448 [ scc.git] DEBUG [detached HEAD edca611] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:40,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:40,448 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:40,597 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:40,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-08 00:50:41,142 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:41,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-08 00:50:41,636 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:41,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-08 00:50:42,143 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:42,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-08 00:50:42,671 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:42,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:43,163 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:43,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-08 00:50:43,708 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:43,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:43,898 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-08 00:50:43,898 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:43,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-08 00:50:43,898 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:43,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:43,901 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-08 00:50:43,904 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:43,904 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-08 00:50:43,906 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-08 00:50:43,910 [ scc.git] DEBUG Already up to date.
2025-08-08 00:50:43,910 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-08 00:50:44,186 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-08 00:50:44,186 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-08 00:50:44,190 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:44,190 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:44,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:44,193 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-08 00:50:44,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:44,198 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-08 00:50:44,207 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-08 00:50:44,207 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-08 00:50:44,208 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:50:44,208 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:50:44,211 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-08 00:50:44,216 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-08 00:50:44,218 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:44,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:44,412 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-08 00:50:44,415 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-08 00:50:44,417 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-08 00:50:44,420 [ scc.config] DEBUG Found github.token
2025-08-08 00:50:44,420 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-08 00:50:44,420 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:44,461 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:44,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:44,463 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:44,502 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:44,506 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a45a9f10> has no local changes
2025-08-08 00:50:44,506 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:44,512 [ scc.git] DEBUG [detached HEAD 02b7a37] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:44,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:44,513 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-08 00:50:44,513 [ scc.repo] DEBUG ## PRs found:
2025-08-08 00:50:44,663 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:44,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-08 00:50:45,241 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:45,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-08 00:50:45,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:46,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-08 00:50:46,280 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:46,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-08 00:50:46,794 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:47,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:47,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:47,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-08 00:50:47,826 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:48,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-08 00:50:48,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:48,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:48,501 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-08 00:50:48,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:48,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-08 00:50:49,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:49,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-08 00:50:49,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:50,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-08 00:50:50,294 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:50,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-08 00:50:50,827 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:51,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-08 00:50:51,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:51,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-08 00:50:51,507 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-08 00:50:51,758 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:52,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-08 00:50:52,288 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:52,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-08 00:50:52,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:53,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-08 00:50:53,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:53,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-08 00:50:53,603 [ scc.repo] DEBUG ## Branches found:
2025-08-08 00:50:53,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-08 00:50:53,603 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:53,603 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:53,606 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-08 00:50:53,609 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-08 00:50:53,609 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-08 00:50:53,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-08 00:50:53,623 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-08 00:50:53,853 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:54,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-08 00:50:54,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:54,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-08 00:50:54,965 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-08 00:50:55,280 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-08 00:50:55,280 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-08 00:50:55,285 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-08 00:50:55,571 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-08 00:50:55,571 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-08 00:50:55,576 [ scc.git] DEBUG ## Unique users: []
2025-08-08 00:50:55,576 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:55,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:55,578 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-08 00:50:55,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:55,586 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-08 00:50:55,597 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-08 00:50:55,598 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-08 00:50:55,598 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-08 00:50:55,601 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-08 00:50:55,605 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-08 00:50:55,606 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:55,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:55,794 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-08 00:50:55,800 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-08 00:50:55,804 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#498](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-08 00:50:55,806 [ scc.config] DEBUG Found github.token
2025-08-08 00:50:55,806 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-08 00:50:55,806 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-08 00:50:55,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:55,813 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-08 00:50:55,823 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-08 00:50:55,827 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-08 00:50:55,827 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-08 00:50:56,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:56,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:56,235 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-08 00:50:56,277 [ scc.git] DEBUG Get sha1 of %s
2025-08-08 00:50:56,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-08 00:50:56,279 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:56,319 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:50:56,322 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a4573050> has no local changes
2025-08-08 00:50:56,323 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:50:56,329 [ scc.git] DEBUG [detached HEAD 9e23a19] merge master -Dorg -Ssuccess-only
2025-08-08 00:50:56,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:50:56,329 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-08 00:50:56,408 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-08 00:50:56,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:56,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:56,697 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-08 00:50:56,699 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-08 00:50:56,942 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:57,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:57,147 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-08 00:50:57,149 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-08 00:50:57,393 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:57,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:57,590 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-08 00:50:57,592 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-08 00:50:57,836 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:58,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:58,033 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-08 00:50:58,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:58,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:58,473 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-08 00:50:58,475 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-08 00:50:58,719 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:58,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:58,899 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-08 00:50:58,901 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-08 00:50:59,146 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:59,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:59,369 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-08 00:50:59,371 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-08 00:50:59,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:50:59,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:50:59,811 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-08 00:50:59,813 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-08 00:51:00,058 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:00,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:00,251 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-08 00:51:00,253 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-08 00:51:00,496 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:00,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:00,683 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-08 00:51:00,686 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-08 00:51:00,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:01,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:01,146 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-08 00:51:01,148 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-08 00:51:01,391 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:01,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:01,576 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-08 00:51:01,578 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-08 00:51:01,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:02,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:02,021 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-08 00:51:02,265 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:02,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:02,453 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-08 00:51:02,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:02,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:02,890 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-08 00:51:02,892 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-08 00:51:03,136 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:03,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:03,338 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-08 00:51:03,582 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:03,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:03,787 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-08 00:51:04,030 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:04,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:04,241 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-08 00:51:04,243 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-08 00:51:04,487 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:04,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:04,686 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-08 00:51:04,688 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-08 00:51:04,932 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:05,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:05,129 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-08 00:51:05,131 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-08 00:51:05,376 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:05,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:05,563 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-08 00:51:05,565 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-08 00:51:05,809 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-08 00:51:06,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-08 00:51:06,029 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-08 00:51:06,029 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-08 00:51:06,118 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f51a6f30290> has local changes
2025-08-08 00:51:06,118 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#498 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/498/)'
2025-08-08 00:51:06,131 [ scc.git] DEBUG [detached HEAD 53c775b] merge master -Dorg -Ssuccess-only
2025-08-08 00:51:06,131 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-08 00:51:06,131 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-08 00:51:06,131 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,131 [ scc.merge] INFO
2025-08-08 00:51:06,131 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,131 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-08 00:51:06,131 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-08 00:51:06,131 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-08 00:51:06,131 [ scc.merge] INFO
2025-08-08 00:51:06,131 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-08 00:51:06,131 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,131 [ scc.merge] INFO
2025-08-08 00:51:06,131 [ scc.merge] INFO
2025-08-08 00:51:06,131 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-08 00:51:06,131 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-08 00:51:06,132 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-08 00:51:06,132 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-08 00:51:06,132 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-08 00:51:06,132 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-08 00:51:06,132 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,132 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-08 00:51:06,132 [ scc.merge] INFO
2025-08-08 00:51:06,132 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-08 00:51:06,133 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-08 00:51:06,133 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-08 00:51:06,133 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-08 00:51:06,133 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-08 00:51:06,133 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-08 00:51:06,133 [ scc.merge] INFO
2025-08-08 00:51:06,133 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-08 00:51:06,133 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-08 00:51:06,134 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-08 00:51:06,134 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-08 00:51:06,134 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-08 00:51:06,134 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-08 00:51:06,134 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-08 00:51:06,134 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-08 00:51:06,134 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,134 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-08 00:51:06,134 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-08 00:51:06,134 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-08 00:51:06,135 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-08 00:51:06,135 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-08 00:51:06,135 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-08 00:51:06,135 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-08 00:51:06,135 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-08 00:51:06,135 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-08 00:51:06,135 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-08 00:51:06,135 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,135 [ scc.merge] INFO
2025-08-08 00:51:06,135 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-08 00:51:06,135 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-08 00:51:06,136 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-08 00:51:06,136 [ scc.merge] INFO Updating deab817..160d894
2025-08-08 00:51:06,136 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-08 00:51:06,136 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-08 00:51:06,136 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-08 00:51:06,136 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-08 00:51:06,136 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-08 00:51:06,136 [ scc.merge] INFO Already up to date.
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-08 00:51:06,136 [ scc.merge] INFO
2025-08-08 00:51:06,136 [ scc.merge] INFO Repository: ome/scripts
2025-08-08 00:51:06,136 [ scc.merge] INFO Excluded PRs:
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-08 00:51:06,136 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-08 00:51:06,136 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-08 00:51:06,136 [ scc.merge] INFO Previously merged:
2025-08-08 00:51:06,137 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-08 00:51:06,137 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-08 00:51:06,137 [ scc.merge] INFO
2025-08-08 00:51:06,137 [ scc.merge] INFO Merged PRs:
2025-08-08 00:51:06,137 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-08 00:51:06,137 [ scc.merge] INFO
2025-08-08 00:51:06,137 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-08 00:51:06,137 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-08 00:51:06,137 [ scc.merge] INFO
2025-08-08 00:51:06,137 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-08 00:51:06,137 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,139 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-08 00:51:06,139 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-08 00:51:06,141 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-08 00:51:06,144 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-08 00:51:06,146 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-08 00:51:06,148 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-08 00:51:06,150 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-08 00:51:06,153 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-08 00:51:06,155 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-08 00:51:06,157 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-08 00:51:06,159 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,161 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,161 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-08 00:51:06,161 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,163 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,163 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-08 00:51:06,163 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,165 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,165 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-08 00:51:06,165 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-08 00:51:06,168 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-08 00:51:06,170 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,172 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,172 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-08 00:51:06,172 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-08 00:51:06,174 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-08 00:51:06,177 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,179 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,179 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-08 00:51:06,179 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-08 00:51:06,181 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,183 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,183 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-08 00:51:06,183 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-08 00:51:06,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-08 00:51:06,185 [ scc.git] DEBUG Calling 'git remote'
2025-08-08 00:51:06,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD bb10574] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD ace142a] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-08 00:51:55,334 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-08 00:52:05,383 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-08 00:52:07,994 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-08 00:52:13,051 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-08 00:52:54,514 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
