Skipping 223 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-10 00:45:38,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-10 00:45:39,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:39,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:39,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:39,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-10 00:45:40,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:40,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:40,328 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:45:40,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:40,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-10 00:45:41,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:41,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-10 00:45:41,554 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:41,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-10 00:45:42,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:42,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:42,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:42,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-10 00:45:43,146 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:43,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:43,339 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-10 00:45:43,339 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:45:43,339 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-10 00:45:43,339 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:43,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:43,342 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:45:43,345 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:45:43,345 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:45:43,348 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:45:43,351 [ scc.git] DEBUG Already up to date.
2025-08-10 00:45:43,351 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-10 00:45:43,645 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-10 00:45:43,645 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-10 00:45:43,649 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-10 00:45:43,915 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-10 00:45:43,915 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-10 00:45:43,919 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:45:43,919 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:43,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:43,921 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-10 00:45:43,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:43,928 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-10 00:45:43,937 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:45:43,941 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-10 00:45:43,941 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-10 00:45:43,941 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-10 00:45:43,941 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-10 00:45:43,941 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-10 00:45:43,941 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-10 00:45:43,942 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:44,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:45:44,137 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-10 00:45:44,142 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:44,144 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-10 00:45:44,153 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:45:44,157 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-10 00:45:44,157 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-10 00:45:44,388 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:44,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:45:44,568 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:45:44,609 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:44,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:44,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:45:44,651 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:45:44,655 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b7d53d0> has no local changes
2025-08-10 00:45:44,655 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:45:44,662 [ scc.git] DEBUG [detached HEAD ce35013] merge master -Dorg -Ssuccess-only
2025-08-10 00:45:44,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:45:44,662 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:45:44,819 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:45,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-10 00:45:45,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:45,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-10 00:45:45,887 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:46,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-10 00:45:46,398 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:46,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-10 00:45:46,960 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:47,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:47,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:47,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-10 00:45:48,022 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:48,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:48,218 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-10 00:45:48,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:48,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-10 00:45:48,955 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:49,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-10 00:45:49,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:49,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-10 00:45:50,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:50,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:50,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:50,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-10 00:45:51,038 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:51,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:51,237 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-10 00:45:51,237 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:45:51,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-10 00:45:51,237 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:51,237 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:51,240 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:45:51,242 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:45:51,242 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:45:51,245 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:45:51,253 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-10 00:45:51,488 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:51,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-10 00:45:51,910 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-10 00:45:52,193 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-10 00:45:52,193 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-10 00:45:52,198 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-10 00:45:52,469 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-10 00:45:52,469 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-10 00:45:52,474 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:45:52,474 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:52,474 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:52,476 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-10 00:45:52,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:52,483 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-10 00:45:52,496 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-10 00:45:52,496 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-10 00:45:52,496 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-10 00:45:52,496 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-10 00:45:52,496 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:45:52,497 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:45:52,500 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-10 00:45:52,504 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-10 00:45:52,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:52,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:45:52,702 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-10 00:45:52,707 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-10 00:45:52,710 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-10 00:45:52,712 [ scc.config] DEBUG Found github.token
2025-08-10 00:45:52,712 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-10 00:45:52,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-10 00:45:52,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:52,719 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-10 00:45:52,735 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-10 00:45:52,735 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-10 00:45:52,735 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-10 00:45:52,735 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:45:52,735 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:45:52,739 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-10 00:45:52,744 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-10 00:45:52,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:53,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:45:53,142 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-10 00:45:53,147 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-10 00:45:53,149 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-10 00:45:53,152 [ scc.config] DEBUG Found github.token
2025-08-10 00:45:53,152 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-10 00:45:53,152 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:45:53,193 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:45:53,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:45:53,195 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:45:53,235 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:45:53,239 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5ba68890> has no local changes
2025-08-10 00:45:53,239 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:45:53,246 [ scc.git] DEBUG [detached HEAD 2a2da2d] merge master -Dorg -Ssuccess-only
2025-08-10 00:45:53,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:45:53,246 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:45:53,393 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:53,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-10 00:45:53,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:54,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-10 00:45:54,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:54,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-10 00:45:55,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:55,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:55,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:55,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:45:56,033 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:56,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-10 00:45:56,527 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:56,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:56,724 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:45:56,975 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:57,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-10 00:45:57,215 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-10 00:45:57,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:57,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-10 00:45:58,029 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:58,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:45:58,566 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:58,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:45:59,122 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:59,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-10 00:45:59,686 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:45:59,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:45:59,893 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-10 00:46:00,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:00,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-10 00:46:00,407 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-10 00:46:00,658 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:00,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-10 00:46:01,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:01,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:01,777 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:02,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:02,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:02,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-10 00:46:02,827 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:03,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:03,026 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-10 00:46:03,277 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:03,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-10 00:46:03,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:04,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-10 00:46:04,315 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:04,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-10 00:46:04,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:05,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-10 00:46:05,321 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:05,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-10 00:46:05,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:06,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-10 00:46:06,311 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:06,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-10 00:46:06,733 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:06,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-10 00:46:06,733 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:06,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:06,736 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:06,739 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:06,739 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:06,742 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:06,745 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:06,745 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-10 00:46:07,038 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-10 00:46:07,038 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-10 00:46:07,043 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-10 00:46:07,311 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-10 00:46:07,311 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-10 00:46:07,316 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-10 00:46:07,588 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-10 00:46:07,588 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-10 00:46:07,593 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:07,593 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:07,593 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:07,595 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-10 00:46:07,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:07,600 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-10 00:46:07,609 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:07,613 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-10 00:46:07,613 [ scc.git] DEBUG package.json | 2 +-
2025-08-10 00:46:07,613 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-10 00:46:07,614 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:07,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:07,797 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-10 00:46:07,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:07,802 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-10 00:46:07,813 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-10 00:46:07,813 [ scc.git] DEBUG Auto-merging package.json
2025-08-10 00:46:07,814 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:07,817 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-10 00:46:07,818 [ scc.git] DEBUG package.json | 2 +-
2025-08-10 00:46:07,818 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-10 00:46:08,048 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:08,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:08,229 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-10 00:46:08,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:08,235 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-10 00:46:08,244 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:08,247 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-10 00:46:08,247 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-10 00:46:08,480 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:08,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:08,660 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:08,702 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:08,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:08,704 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:08,745 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:08,749 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c586101d0> has no local changes
2025-08-10 00:46:08,750 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:08,757 [ scc.git] DEBUG [detached HEAD b26a07b] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:08,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:08,757 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:08,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:09,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-10 00:46:09,116 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:09,116 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-10 00:46:09,116 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:09,116 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:09,118 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:09,121 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:09,121 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:09,124 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:09,127 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:09,127 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:09,127 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:09,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:09,129 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:09,169 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:09,169 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:09,171 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:09,210 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:09,213 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5861a190> has no local changes
2025-08-10 00:46:09,213 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:09,219 [ scc.git] DEBUG [detached HEAD 4edd4ae] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:09,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:09,219 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:09,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:09,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-10 00:46:09,878 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:10,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-10 00:46:10,385 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:10,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-10 00:46:10,859 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:11,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-10 00:46:11,439 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:11,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:11,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:12,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:12,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:12,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-10 00:46:12,958 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:13,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:13,435 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:13,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-10 00:46:13,939 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:14,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-10 00:46:14,167 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-10 00:46:14,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:14,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-10 00:46:14,667 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:14,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-10 00:46:14,667 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:14,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:14,669 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:14,672 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:14,672 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:14,675 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:14,678 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:14,678 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-10 00:46:14,957 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-10 00:46:14,957 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-10 00:46:14,961 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:14,961 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:14,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:14,964 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-10 00:46:14,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:14,969 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-10 00:46:14,977 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:14,981 [ scc.git] DEBUG setup.py | 4 +-
2025-08-10 00:46:14,981 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-10 00:46:14,981 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-10 00:46:14,981 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-10 00:46:14,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:15,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:15,169 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:15,210 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:15,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:15,213 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:15,253 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:15,257 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b73a810> has no local changes
2025-08-10 00:46:15,257 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:15,263 [ scc.git] DEBUG [detached HEAD ea25395] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:15,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:15,264 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:15,420 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:15,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-10 00:46:15,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:16,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-10 00:46:16,489 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:16,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-10 00:46:16,980 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:17,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-10 00:46:17,586 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:17,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:18,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:18,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-10 00:46:18,725 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:18,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:18,925 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-10 00:46:18,925 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:18,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-10 00:46:18,925 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:18,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:18,928 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:18,930 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:18,930 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:18,933 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:18,936 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:18,936 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-10 00:46:19,210 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-10 00:46:19,210 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-10 00:46:19,214 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:19,214 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:19,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:19,217 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-10 00:46:19,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:19,222 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-10 00:46:19,233 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG Auto-merging setup.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-10 00:46:19,233 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:46:19,233 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:46:19,236 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-10 00:46:19,240 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-10 00:46:19,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:19,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:19,421 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-10 00:46:19,424 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-10 00:46:19,427 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
- setup.py
--conflicts
2025-08-10 00:46:19,429 [ scc.config] DEBUG Found github.token
2025-08-10 00:46:19,430 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-10 00:46:19,430 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:19,470 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:19,470 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:19,473 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:19,514 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:19,518 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c58648a90> has no local changes
2025-08-10 00:46:19,518 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:19,524 [ scc.git] DEBUG [detached HEAD 04f3cbf] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:19,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:19,525 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:19,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:19,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-10 00:46:20,238 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:20,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-10 00:46:20,746 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:21,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-10 00:46:21,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:21,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:21,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:22,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:22,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:22,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-10 00:46:23,067 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:23,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:23,270 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-10 00:46:23,522 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:23,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-10 00:46:24,037 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:24,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-10 00:46:24,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:24,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-10 00:46:25,052 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:25,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:25,575 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:25,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:26,063 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:26,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-10 00:46:26,583 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:26,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-10 00:46:27,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:27,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-10 00:46:27,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:27,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-10 00:46:28,033 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:28,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-10 00:46:28,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:28,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:29,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:29,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-10 00:46:29,759 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:30,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:30,002 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-10 00:46:30,002 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:30,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-10 00:46:30,002 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:30,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:30,005 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:30,007 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:30,007 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:30,010 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:30,013 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:30,014 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-10 00:46:30,303 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-10 00:46:30,303 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-10 00:46:30,307 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-10 00:46:30,587 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-10 00:46:30,587 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-10 00:46:30,591 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:30,591 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:30,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:30,593 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-10 00:46:30,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:30,600 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-10 00:46:30,663 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:30,667 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-10 00:46:30,667 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-10 00:46:30,668 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-10 00:46:30,668 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-10 00:46:30,668 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-10 00:46:30,668 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-10 00:46:30,668 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-10 00:46:30,669 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-10 00:46:30,669 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-10 00:46:30,669 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-10 00:46:30,669 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-10 00:46:30,669 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-10 00:46:30,669 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-10 00:46:30,669 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-10 00:46:30,669 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-10 00:46:30,670 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-10 00:46:30,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:30,849 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-10 00:46:30,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:30,856 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-10 00:46:30,867 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:30,869 [ scc.git] DEBUG docker | 1 +
2025-08-10 00:46:30,869 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-10 00:46:31,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:31,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:31,290 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:31,332 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:31,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:31,334 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:31,375 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:31,379 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c58644490> has no local changes
2025-08-10 00:46:31,379 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:31,386 [ scc.git] DEBUG [detached HEAD ce08dfa] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:31,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:31,386 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:31,541 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:31,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-10 00:46:31,746 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:31,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-10 00:46:31,746 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:31,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:31,748 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:31,750 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:31,750 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:31,753 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:31,756 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:31,756 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:31,756 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:31,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:31,759 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:31,800 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:31,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:31,803 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:31,842 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:31,846 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b801710> has no local changes
2025-08-10 00:46:31,846 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:31,852 [ scc.git] DEBUG [detached HEAD c87fa82] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:31,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:31,853 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:31,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:32,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-10 00:46:32,212 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:32,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-10 00:46:32,212 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:32,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:32,214 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:32,217 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:32,217 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:32,220 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:32,227 [ scc.git] DEBUG Updating deab817..160d894
2025-08-10 00:46:32,463 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:32,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-10 00:46:32,880 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:32,880 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:32,880 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:32,883 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:32,925 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:32,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:32,927 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:32,967 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:32,971 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5865bd10> has no local changes
2025-08-10 00:46:32,971 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:32,977 [ scc.git] DEBUG [detached HEAD dc89959] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:32,978 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:32,978 [ scc.git] INFO Overriding base-branch from master to main
2025-08-10 00:46:32,978 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:33,131 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:33,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-10 00:46:33,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:33,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-10 00:46:34,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:34,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-10 00:46:34,694 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:35,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-10 00:46:35,285 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:35,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:35,820 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:36,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:36,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:36,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-10 00:46:36,818 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:37,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-10 00:46:37,305 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:37,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-10 00:46:37,791 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:38,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-10 00:46:38,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:38,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:38,788 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:39,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-10 00:46:39,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:39,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:39,573 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-10 00:46:39,573 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:39,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-10 00:46:39,573 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:39,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:39,576 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-10 00:46:39,578 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:39,579 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-10 00:46:39,581 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-10 00:46:39,585 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:39,585 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-10 00:46:39,869 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-10 00:46:39,869 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-10 00:46:39,873 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:39,874 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:39,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:39,876 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-10 00:46:39,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:39,881 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-10 00:46:39,889 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-10 00:46:39,889 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-10 00:46:39,890 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:46:39,890 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:46:39,893 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-10 00:46:39,897 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-10 00:46:39,898 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:40,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:40,093 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-10 00:46:40,096 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-10 00:46:40,099 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-10 00:46:40,101 [ scc.config] DEBUG Found github.token
2025-08-10 00:46:40,101 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-10 00:46:40,101 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:40,143 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,146 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:40,186 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:40,189 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c58656f50> has no local changes
2025-08-10 00:46:40,189 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:40,196 [ scc.git] DEBUG [detached HEAD 08edb99] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:40,196 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:40,196 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:40,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:40,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-10 00:46:40,524 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:40,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-10 00:46:40,524 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,526 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:40,528 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:40,528 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:40,531 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:40,534 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:40,534 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:40,534 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,536 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:40,575 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,577 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:40,613 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:40,617 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c58678890> has no local changes
2025-08-10 00:46:40,617 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:40,623 [ scc.git] DEBUG [detached HEAD 63440e5] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:40,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:40,623 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:40,775 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:40,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-10 00:46:40,970 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:40,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-10 00:46:40,971 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,973 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:40,975 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:40,975 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:40,978 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:40,981 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:40,981 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:40,981 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:40,981 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:40,984 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:41,025 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:41,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:41,027 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:41,067 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:41,071 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b952750> has no local changes
2025-08-10 00:46:41,071 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:41,078 [ scc.git] DEBUG [detached HEAD 867fc9b] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:41,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:41,078 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:41,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:41,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-10 00:46:41,774 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:42,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-10 00:46:42,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:42,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-10 00:46:42,762 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:43,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-10 00:46:43,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:43,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:43,800 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:44,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-10 00:46:44,321 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:44,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:44,516 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-10 00:46:44,516 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:44,516 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-10 00:46:44,516 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:44,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:44,519 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-10 00:46:44,521 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:44,521 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-10 00:46:44,524 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-10 00:46:44,527 [ scc.git] DEBUG Already up to date.
2025-08-10 00:46:44,527 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-10 00:46:44,820 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-10 00:46:44,820 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-10 00:46:44,825 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:44,825 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:44,825 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:44,827 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-10 00:46:44,830 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:44,833 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-10 00:46:44,842 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-10 00:46:44,842 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-10 00:46:44,843 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:46:44,843 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:46:44,846 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-10 00:46:44,851 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-10 00:46:44,852 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:45,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:45,043 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-10 00:46:45,046 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-10 00:46:45,049 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-10 00:46:45,051 [ scc.config] DEBUG Found github.token
2025-08-10 00:46:45,051 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-10 00:46:45,051 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:45,092 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:45,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:45,094 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:45,134 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:45,137 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b807150> has no local changes
2025-08-10 00:46:45,138 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:45,144 [ scc.git] DEBUG [detached HEAD 41f4181] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:45,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:45,144 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-10 00:46:45,144 [ scc.repo] DEBUG ## PRs found:
2025-08-10 00:46:45,294 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:45,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-10 00:46:45,939 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:46,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-10 00:46:46,489 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:46,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-10 00:46:46,976 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:47,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-10 00:46:47,505 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:47,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:48,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:48,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-10 00:46:48,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:48,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-10 00:46:48,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:49,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:49,170 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-10 00:46:49,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:49,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-10 00:46:49,922 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:50,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-10 00:46:50,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:50,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-10 00:46:50,880 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:51,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-10 00:46:51,354 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:51,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-10 00:46:51,827 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:52,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-10 00:46:52,013 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-10 00:46:52,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:52,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-10 00:46:52,775 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:53,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-10 00:46:53,261 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:53,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-10 00:46:53,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:53,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-10 00:46:53,996 [ scc.repo] DEBUG ## Branches found:
2025-08-10 00:46:53,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-10 00:46:53,996 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:53,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:53,999 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-10 00:46:54,002 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-10 00:46:54,002 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-10 00:46:54,005 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-10 00:46:54,016 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-10 00:46:54,246 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:54,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-10 00:46:54,928 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:55,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-10 00:46:55,352 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-10 00:46:55,647 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-10 00:46:55,647 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-10 00:46:55,653 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-10 00:46:55,950 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-10 00:46:55,950 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-10 00:46:55,955 [ scc.git] DEBUG ## Unique users: []
2025-08-10 00:46:55,955 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:55,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:55,957 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-10 00:46:55,963 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:55,966 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-10 00:46:55,977 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-10 00:46:55,978 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-10 00:46:55,978 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-10 00:46:55,980 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-10 00:46:55,984 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-10 00:46:55,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:56,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:56,170 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-10 00:46:56,176 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-10 00:46:56,180 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#499](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-10 00:46:56,182 [ scc.config] DEBUG Found github.token
2025-08-10 00:46:56,182 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-10 00:46:56,182 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-10 00:46:56,187 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:56,189 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-10 00:46:56,200 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-10 00:46:56,203 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-10 00:46:56,203 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-10 00:46:56,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:56,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:56,617 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-10 00:46:56,659 [ scc.git] DEBUG Get sha1 of %s
2025-08-10 00:46:56,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-10 00:46:56,661 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:56,701 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:46:56,705 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c586cd9d0> has no local changes
2025-08-10 00:46:56,705 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:46:56,712 [ scc.git] DEBUG [detached HEAD 647c436] merge master -Dorg -Ssuccess-only
2025-08-10 00:46:56,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:46:56,713 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-10 00:46:56,794 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-10 00:46:56,868 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:57,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:57,066 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-10 00:46:57,068 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-10 00:46:57,312 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:57,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:57,506 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-10 00:46:57,508 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-10 00:46:57,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:57,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:57,964 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-10 00:46:57,966 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-10 00:46:58,211 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:58,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:58,392 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-10 00:46:58,636 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:58,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:58,839 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-10 00:46:58,841 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-10 00:46:59,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:59,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:59,271 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-10 00:46:59,274 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-10 00:46:59,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:46:59,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:46:59,722 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-10 00:46:59,724 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-10 00:46:59,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:00,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:00,144 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-10 00:47:00,146 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-10 00:47:00,391 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:00,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:00,579 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-10 00:47:00,581 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-10 00:47:00,826 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:01,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:01,028 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-10 00:47:01,030 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-10 00:47:01,275 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:01,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:01,465 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-10 00:47:01,467 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-10 00:47:01,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:01,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:01,906 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-10 00:47:01,908 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-10 00:47:02,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:02,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:02,348 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-10 00:47:02,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:02,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:02,802 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-10 00:47:03,047 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:03,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:03,229 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-10 00:47:03,231 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-10 00:47:03,476 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:03,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:03,662 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-10 00:47:03,907 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:04,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:04,105 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-10 00:47:04,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:04,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:04,572 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-10 00:47:04,574 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-10 00:47:04,818 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:05,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:05,030 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-10 00:47:05,032 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-10 00:47:05,277 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:05,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:05,463 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-10 00:47:05,465 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-10 00:47:05,709 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:05,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:05,900 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-10 00:47:05,902 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-10 00:47:06,147 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-10 00:47:06,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-10 00:47:06,323 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-10 00:47:06,324 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-10 00:47:06,415 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c5b83e790> has local changes
2025-08-10 00:47:06,416 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#499 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/499/)'
2025-08-10 00:47:06,429 [ scc.git] DEBUG [detached HEAD 2d3cd5e] merge master -Dorg -Ssuccess-only
2025-08-10 00:47:06,429 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-10 00:47:06,429 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-10 00:47:06,429 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,429 [ scc.merge] INFO
2025-08-10 00:47:06,429 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,429 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-10 00:47:06,429 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-10 00:47:06,429 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-10 00:47:06,429 [ scc.merge] INFO
2025-08-10 00:47:06,429 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-10 00:47:06,429 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-10 00:47:06,430 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-10 00:47:06,430 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-10 00:47:06,430 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,430 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-10 00:47:06,430 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-10 00:47:06,430 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-10 00:47:06,430 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-10 00:47:06,430 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,430 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-10 00:47:06,431 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-10 00:47:06,431 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-10 00:47:06,431 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-10 00:47:06,431 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-10 00:47:06,431 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,431 [ scc.merge] INFO
2025-08-10 00:47:06,431 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-10 00:47:06,431 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-10 00:47:06,432 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-10 00:47:06,432 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-10 00:47:06,432 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-10 00:47:06,432 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-10 00:47:06,432 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-10 00:47:06,432 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,432 [ scc.merge] INFO
2025-08-10 00:47:06,432 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-10 00:47:06,432 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-10 00:47:06,433 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-10 00:47:06,433 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-10 00:47:06,433 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-10 00:47:06,433 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-10 00:47:06,433 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-10 00:47:06,433 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-10 00:47:06,433 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,433 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-10 00:47:06,433 [ scc.merge] INFO
2025-08-10 00:47:06,433 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-10 00:47:06,433 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-10 00:47:06,434 [ scc.merge] INFO Updating deab817..160d894
2025-08-10 00:47:06,434 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-10 00:47:06,434 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,434 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-10 00:47:06,434 [ scc.merge] INFO Already up to date.
2025-08-10 00:47:06,434 [ scc.merge] INFO
2025-08-10 00:47:06,434 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-10 00:47:06,435 [ scc.merge] INFO
2025-08-10 00:47:06,435 [ scc.merge] INFO Repository: ome/scripts
2025-08-10 00:47:06,435 [ scc.merge] INFO Excluded PRs:
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-10 00:47:06,435 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-10 00:47:06,435 [ scc.merge] INFO Previously merged:
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-10 00:47:06,435 [ scc.merge] INFO
2025-08-10 00:47:06,435 [ scc.merge] INFO Merged PRs:
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-10 00:47:06,435 [ scc.merge] INFO
2025-08-10 00:47:06,435 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-10 00:47:06,435 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-10 00:47:06,435 [ scc.merge] INFO
2025-08-10 00:47:06,435 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-10 00:47:06,435 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-10 00:47:06,437 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,439 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,439 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-10 00:47:06,440 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,442 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,442 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-10 00:47:06,442 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-10 00:47:06,444 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-10 00:47:06,446 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-10 00:47:06,449 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,451 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,451 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-10 00:47:06,451 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-10 00:47:06,453 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-10 00:47:06,456 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-10 00:47:06,458 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-10 00:47:06,460 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,462 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,462 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-10 00:47:06,462 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-10 00:47:06,465 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-10 00:47:06,467 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-10 00:47:06,469 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-10 00:47:06,471 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-10 00:47:06,474 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-10 00:47:06,476 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-10 00:47:06,478 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-10 00:47:06,480 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-10 00:47:06,483 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-10 00:47:06,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-10 00:47:06,485 [ scc.git] DEBUG Calling 'git remote'
2025-08-10 00:47:06,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD d0dc08a] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD e61ec13] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-10 00:48:00,352 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-10 00:48:10,344 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-10 00:48:12,996 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-10 00:48:17,992 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-10 00:48:58,669 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
