Skipping 223 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-12 00:47:10,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-12 00:47:10,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:11,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:11,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:11,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-12 00:47:11,837 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:12,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:12,109 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:47:12,360 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:12,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-12 00:47:12,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:13,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-12 00:47:13,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:13,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-12 00:47:13,989 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:14,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:14,494 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:14,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-12 00:47:15,012 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:15,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:15,209 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-12 00:47:15,209 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:15,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-12 00:47:15,209 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:15,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:15,212 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:15,215 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:15,215 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:15,218 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:15,221 [ scc.git] DEBUG Already up to date.
2025-08-12 00:47:15,221 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-12 00:47:15,501 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-12 00:47:15,501 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-12 00:47:15,506 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-12 00:47:15,780 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-12 00:47:15,780 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-12 00:47:15,784 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:15,784 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:15,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:15,787 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-12 00:47:15,791 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:15,794 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-12 00:47:15,803 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:15,806 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-12 00:47:15,806 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-12 00:47:15,806 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-12 00:47:15,807 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-12 00:47:15,807 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-12 00:47:15,807 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-12 00:47:15,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:15,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:15,997 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-12 00:47:16,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:16,003 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-12 00:47:16,013 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:16,016 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-12 00:47:16,016 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-12 00:47:16,247 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:16,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:16,438 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:16,480 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:16,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:16,482 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:16,522 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:16,526 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb2f06d0> has no local changes
2025-08-12 00:47:16,526 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:16,533 [ scc.git] DEBUG [detached HEAD 84c514a] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:16,533 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:16,533 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:16,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:16,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-12 00:47:17,224 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:17,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-12 00:47:17,737 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:18,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-12 00:47:18,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:18,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-12 00:47:18,815 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:19,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:19,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:19,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-12 00:47:19,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:20,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:20,090 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-12 00:47:20,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:20,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-12 00:47:20,885 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:21,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-12 00:47:21,417 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:21,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-12 00:47:21,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:22,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:22,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:22,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-12 00:47:22,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:23,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:23,098 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-12 00:47:23,098 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:23,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-12 00:47:23,098 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:23,098 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:23,101 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:23,104 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:23,104 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:23,107 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:23,115 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-12 00:47:23,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:23,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-12 00:47:23,805 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-12 00:47:24,086 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-12 00:47:24,086 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-12 00:47:24,090 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-12 00:47:24,358 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-12 00:47:24,358 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-12 00:47:24,363 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:24,363 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:24,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:24,365 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-12 00:47:24,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:24,372 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-12 00:47:24,386 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-12 00:47:24,386 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-12 00:47:24,386 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-12 00:47:24,386 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-12 00:47:24,386 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:47:24,386 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:47:24,389 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-12 00:47:24,394 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-12 00:47:24,395 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:24,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:24,561 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-12 00:47:24,566 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-12 00:47:24,569 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-12 00:47:24,571 [ scc.config] DEBUG Found github.token
2025-08-12 00:47:24,571 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-12 00:47:24,571 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-12 00:47:24,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:24,578 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-12 00:47:24,593 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-12 00:47:24,593 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-12 00:47:24,593 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-12 00:47:24,594 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:47:24,594 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:47:24,597 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-12 00:47:24,602 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-12 00:47:24,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:25,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:25,004 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-12 00:47:25,009 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-12 00:47:25,012 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-12 00:47:25,014 [ scc.config] DEBUG Found github.token
2025-08-12 00:47:25,014 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-12 00:47:25,014 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:25,056 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:25,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:25,058 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:25,098 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:25,103 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc801b9d0> has no local changes
2025-08-12 00:47:25,103 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:25,110 [ scc.git] DEBUG [detached HEAD 397c54d] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:25,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:25,110 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:25,255 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:25,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-12 00:47:25,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:26,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-12 00:47:26,334 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:26,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-12 00:47:26,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:27,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:27,397 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:27,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:27,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:28,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-12 00:47:28,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:28,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:28,588 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:47:28,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:29,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-12 00:47:29,104 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-12 00:47:29,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:29,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-12 00:47:29,954 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:30,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:30,480 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:30,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:31,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:31,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-12 00:47:31,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:31,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:31,863 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-12 00:47:32,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:32,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-12 00:47:32,371 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-12 00:47:32,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:32,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-12 00:47:33,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:33,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:33,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:34,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:34,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:34,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-12 00:47:34,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:35,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:35,101 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-12 00:47:35,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:35,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-12 00:47:35,872 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:36,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-12 00:47:36,362 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:36,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-12 00:47:36,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:37,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-12 00:47:37,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:37,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-12 00:47:37,896 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:38,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-12 00:47:38,422 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:38,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-12 00:47:38,701 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:38,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-12 00:47:38,701 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:38,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:38,704 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:38,707 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:38,707 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:38,710 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:38,713 [ scc.git] DEBUG Already up to date.
2025-08-12 00:47:38,713 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-12 00:47:39,009 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-12 00:47:39,009 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-12 00:47:39,014 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-12 00:47:39,283 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-12 00:47:39,284 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-12 00:47:39,289 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-12 00:47:39,562 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-12 00:47:39,562 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-12 00:47:39,566 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:39,566 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:39,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:39,569 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-12 00:47:39,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:39,574 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-12 00:47:39,582 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:39,585 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-12 00:47:39,585 [ scc.git] DEBUG package.json | 2 +-
2025-08-12 00:47:39,585 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-12 00:47:39,586 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:39,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:39,761 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-12 00:47:39,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:39,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-12 00:47:39,776 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-12 00:47:39,776 [ scc.git] DEBUG Auto-merging package.json
2025-08-12 00:47:39,777 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:39,781 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-12 00:47:39,781 [ scc.git] DEBUG package.json | 2 +-
2025-08-12 00:47:39,781 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-12 00:47:40,012 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:40,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:40,198 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-12 00:47:40,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:40,204 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-12 00:47:40,213 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:40,216 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-12 00:47:40,216 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-12 00:47:40,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:40,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:40,645 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:40,686 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:40,686 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:40,689 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:40,728 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:40,732 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb1e8610> has no local changes
2025-08-12 00:47:40,732 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:40,738 [ scc.git] DEBUG [detached HEAD d17b5b4] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:40,738 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:40,739 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:40,896 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:41,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-12 00:47:41,164 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:41,164 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-12 00:47:41,164 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:41,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:41,167 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:41,169 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:41,169 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:41,172 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:41,175 [ scc.git] DEBUG Already up to date.
2025-08-12 00:47:41,175 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:41,175 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:41,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:41,178 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:41,218 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:41,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:41,220 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:41,258 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:41,261 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc8013950> has no local changes
2025-08-12 00:47:41,261 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:41,267 [ scc.git] DEBUG [detached HEAD 43017ce] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:41,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:41,268 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:41,415 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:41,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-12 00:47:41,971 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:42,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-12 00:47:42,494 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:42,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-12 00:47:42,962 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:43,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-12 00:47:43,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:43,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:44,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:44,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:44,572 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:44,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-12 00:47:45,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:45,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:45,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:45,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-12 00:47:46,064 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:46,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-12 00:47:46,270 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-12 00:47:46,521 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:46,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-12 00:47:46,792 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:46,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-12 00:47:46,792 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:46,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:46,795 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:46,797 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:46,797 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:46,800 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:46,803 [ scc.git] DEBUG Already up to date.
2025-08-12 00:47:46,803 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-12 00:47:47,086 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-12 00:47:47,086 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-12 00:47:47,091 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:47,091 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:47,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:47,094 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-12 00:47:47,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:47,099 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-12 00:47:47,107 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:47:47,110 [ scc.git] DEBUG setup.py | 4 +-
2025-08-12 00:47:47,110 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-12 00:47:47,110 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-12 00:47:47,110 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-12 00:47:47,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:47,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:47,311 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:47,351 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:47,351 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:47,354 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:47,395 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:47,399 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc804f490> has no local changes
2025-08-12 00:47:47,399 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:47,405 [ scc.git] DEBUG [detached HEAD 8a0bc83] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:47,406 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:47,406 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:47,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:47,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-12 00:47:48,118 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:48,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-12 00:47:48,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:48,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-12 00:47:49,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:49,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-12 00:47:49,690 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:49,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:50,230 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:50,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-12 00:47:50,801 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:51,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:51,001 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-12 00:47:51,001 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:47:51,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-12 00:47:51,001 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:51,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:51,004 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:47:51,007 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:47:51,007 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:47:51,010 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:47:51,013 [ scc.git] DEBUG Already up to date.
2025-08-12 00:47:51,013 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-12 00:47:51,304 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-12 00:47:51,304 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-12 00:47:51,309 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:47:51,309 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:51,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:51,311 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-12 00:47:51,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:51,316 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-12 00:47:51,326 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG Auto-merging setup.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-12 00:47:51,326 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:47:51,326 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:47:51,329 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-12 00:47:51,334 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-12 00:47:51,335 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:51,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:47:51,519 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-12 00:47:51,522 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-12 00:47:51,526 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/views.py
--conflicts
2025-08-12 00:47:51,528 [ scc.config] DEBUG Found github.token
2025-08-12 00:47:51,528 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-12 00:47:51,528 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:47:51,571 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:47:51,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:47:51,574 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:47:51,615 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:47:51,618 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb143690> has no local changes
2025-08-12 00:47:51,619 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:47:51,625 [ scc.git] DEBUG [detached HEAD 8be8fd3] merge master -Dorg -Ssuccess-only
2025-08-12 00:47:51,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:47:51,625 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:47:51,770 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:52,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-12 00:47:52,430 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:52,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-12 00:47:52,910 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:53,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-12 00:47:53,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:53,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:53,995 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:54,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:54,494 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:54,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-12 00:47:54,999 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:55,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:47:55,211 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-12 00:47:55,462 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:55,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-12 00:47:55,970 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:56,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-12 00:47:56,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:56,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-12 00:47:57,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:57,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:47:57,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:57,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:47:58,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:58,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-12 00:47:58,631 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:58,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-12 00:47:59,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:59,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-12 00:47:59,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:47:59,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-12 00:48:00,094 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:00,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-12 00:48:00,648 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:00,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:01,127 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:01,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-12 00:48:01,660 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:01,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:48:01,872 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-12 00:48:01,873 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:01,873 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-12 00:48:01,873 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:01,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:01,876 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:01,878 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:01,878 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:01,881 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:01,884 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:01,885 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-12 00:48:02,197 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-12 00:48:02,197 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-12 00:48:02,201 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-12 00:48:02,486 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-12 00:48:02,486 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-12 00:48:02,491 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:02,491 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:02,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:02,493 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-12 00:48:02,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:02,500 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-12 00:48:02,513 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:48:02,517 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-12 00:48:02,517 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-12 00:48:02,517 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-12 00:48:02,517 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-12 00:48:02,518 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-12 00:48:02,518 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-12 00:48:02,518 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-12 00:48:02,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-12 00:48:02,519 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-12 00:48:02,519 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-12 00:48:02,519 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-12 00:48:02,520 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-12 00:48:02,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:02,713 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-12 00:48:02,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:02,720 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-12 00:48:02,730 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:48:02,733 [ scc.git] DEBUG docker | 1 +
2025-08-12 00:48:02,733 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-12 00:48:02,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:03,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:03,172 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:03,214 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:03,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:03,216 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:03,257 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:03,261 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc8060e50> has no local changes
2025-08-12 00:48:03,261 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:03,267 [ scc.git] DEBUG [detached HEAD 8ef69b5] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:03,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:03,268 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:03,424 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:03,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-12 00:48:03,620 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:03,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-12 00:48:03,620 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:03,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:03,623 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:03,625 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:03,625 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:03,628 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:03,631 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:03,631 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:03,631 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:03,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:03,633 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:03,674 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:03,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:03,677 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:03,716 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:03,719 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc8022290> has no local changes
2025-08-12 00:48:03,719 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:03,726 [ scc.git] DEBUG [detached HEAD 4aed668] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:03,726 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:03,726 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:03,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:04,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-12 00:48:04,072 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:04,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-12 00:48:04,072 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:04,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:04,075 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:04,077 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:04,077 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:04,080 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:04,088 [ scc.git] DEBUG Updating deab817..160d894
2025-08-12 00:48:04,323 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:04,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-12 00:48:04,835 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:04,835 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:04,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:04,838 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:04,880 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:04,880 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:04,883 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:04,925 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:04,928 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc80431d0> has no local changes
2025-08-12 00:48:04,928 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:04,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:04,936 [ scc.git] DEBUG [detached HEAD ccd390e] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:04,936 [ scc.git] INFO Overriding base-branch from master to main
2025-08-12 00:48:04,936 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:05,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:05,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-12 00:48:05,671 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:05,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-12 00:48:06,185 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:06,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-12 00:48:06,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:06,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-12 00:48:07,193 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:07,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:07,767 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:08,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:48:08,270 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:08,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-12 00:48:08,770 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:09,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-12 00:48:09,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:09,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-12 00:48:09,796 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:10,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-12 00:48:10,319 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:10,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:10,794 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:11,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-12 00:48:11,483 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:11,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:48:11,702 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-12 00:48:11,702 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:11,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-12 00:48:11,702 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:11,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:11,705 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-12 00:48:11,708 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:11,708 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-12 00:48:11,711 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-12 00:48:11,714 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:11,714 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-12 00:48:12,007 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-12 00:48:12,007 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-12 00:48:12,012 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:12,012 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:12,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,014 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-12 00:48:12,017 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,020 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-12 00:48:12,027 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-12 00:48:12,027 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-12 00:48:12,028 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:48:12,028 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:48:12,031 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-12 00:48:12,035 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-12 00:48:12,036 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:12,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:12,238 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-12 00:48:12,241 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-12 00:48:12,244 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-12 00:48:12,246 [ scc.config] DEBUG Found github.token
2025-08-12 00:48:12,246 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-12 00:48:12,246 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:12,286 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:12,286 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,288 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:12,327 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:12,331 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc8023950> has no local changes
2025-08-12 00:48:12,331 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:12,337 [ scc.git] DEBUG [detached HEAD 7e7b2cd] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:12,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:12,338 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:12,489 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:12,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-12 00:48:12,708 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:12,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-12 00:48:12,708 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:12,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,710 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:12,713 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:12,713 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:12,716 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:12,719 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:12,719 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:12,719 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:12,719 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,721 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:12,762 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:12,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:12,765 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:12,804 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:12,808 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc8046650> has no local changes
2025-08-12 00:48:12,808 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:12,814 [ scc.git] DEBUG [detached HEAD 38f2aa7] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:12,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:12,815 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:12,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:13,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-12 00:48:13,223 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:13,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-12 00:48:13,223 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:13,223 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:13,226 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:13,228 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:13,228 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:13,231 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:13,234 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:13,234 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:13,235 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:13,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:13,237 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:13,276 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:13,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:13,279 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:13,316 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:13,320 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb239c10> has no local changes
2025-08-12 00:48:13,320 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:13,326 [ scc.git] DEBUG [detached HEAD 9f635ab] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:13,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:13,327 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:13,474 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:13,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-12 00:48:14,004 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:14,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-12 00:48:14,505 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:14,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-12 00:48:14,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:15,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-12 00:48:15,582 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:15,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:16,057 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:16,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-12 00:48:16,620 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:16,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:48:16,810 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-12 00:48:16,810 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:16,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-12 00:48:16,810 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:16,810 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:16,813 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-12 00:48:16,815 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:16,815 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-12 00:48:16,818 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-12 00:48:16,821 [ scc.git] DEBUG Already up to date.
2025-08-12 00:48:16,822 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-12 00:48:17,099 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-12 00:48:17,099 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-12 00:48:17,104 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:17,104 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:17,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:17,106 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-12 00:48:17,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:17,112 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-12 00:48:17,120 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-12 00:48:17,120 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-12 00:48:17,121 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:48:17,121 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:48:17,124 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-12 00:48:17,129 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-12 00:48:17,130 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:17,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:17,324 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-12 00:48:17,327 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-12 00:48:17,329 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-12 00:48:17,331 [ scc.config] DEBUG Found github.token
2025-08-12 00:48:17,332 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-12 00:48:17,332 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:17,372 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:17,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:17,374 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:17,415 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:17,419 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb1b5dd0> has no local changes
2025-08-12 00:48:17,419 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:17,425 [ scc.git] DEBUG [detached HEAD 89acb5b] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:17,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:17,426 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-12 00:48:17,426 [ scc.repo] DEBUG ## PRs found:
2025-08-12 00:48:17,575 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:17,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-12 00:48:18,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:18,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-12 00:48:18,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:18,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-12 00:48:19,121 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:19,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-12 00:48:19,629 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:19,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:20,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:20,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-12 00:48:20,656 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:20,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-12 00:48:21,104 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:21,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:48:21,326 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-12 00:48:21,577 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:21,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-12 00:48:22,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:22,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-12 00:48:22,524 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:22,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-12 00:48:23,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:23,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-12 00:48:23,514 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:23,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-12 00:48:24,007 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:24,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-12 00:48:24,241 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-12 00:48:24,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:24,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-12 00:48:25,036 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:25,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-12 00:48:25,581 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:25,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-12 00:48:26,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:26,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-12 00:48:26,372 [ scc.repo] DEBUG ## Branches found:
2025-08-12 00:48:26,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-12 00:48:26,372 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:26,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:26,375 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-12 00:48:26,378 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-12 00:48:26,378 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-12 00:48:26,382 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-12 00:48:26,392 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-12 00:48:26,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:27,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-12 00:48:27,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:27,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-12 00:48:27,811 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-12 00:48:28,105 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-12 00:48:28,105 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-12 00:48:28,109 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-12 00:48:28,396 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-12 00:48:28,396 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-12 00:48:28,401 [ scc.git] DEBUG ## Unique users: []
2025-08-12 00:48:28,401 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:28,401 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:28,404 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-12 00:48:28,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:28,412 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-12 00:48:28,423 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-12 00:48:28,424 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-12 00:48:28,424 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-12 00:48:28,427 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-12 00:48:28,431 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-12 00:48:28,432 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:28,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:28,627 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-12 00:48:28,633 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-12 00:48:28,637 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#501](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-12 00:48:28,639 [ scc.config] DEBUG Found github.token
2025-08-12 00:48:28,639 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-12 00:48:28,640 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-12 00:48:28,644 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:28,647 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-12 00:48:28,657 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-12 00:48:28,660 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-12 00:48:28,660 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-12 00:48:28,879 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:29,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:29,057 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-12 00:48:29,097 [ scc.git] DEBUG Get sha1 of %s
2025-08-12 00:48:29,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-12 00:48:29,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:29,138 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:29,142 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedc80e04d0> has no local changes
2025-08-12 00:48:29,142 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:29,148 [ scc.git] DEBUG [detached HEAD dc1c173] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:29,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:29,148 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-12 00:48:29,229 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-12 00:48:29,308 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:29,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:29,499 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-12 00:48:29,501 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-12 00:48:29,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:29,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:29,911 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-12 00:48:29,913 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-12 00:48:30,158 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:30,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:30,346 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-12 00:48:30,348 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-12 00:48:30,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:30,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:30,799 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-12 00:48:31,043 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:31,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:31,247 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-12 00:48:31,249 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-12 00:48:31,493 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:31,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:31,680 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-12 00:48:31,682 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-12 00:48:31,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:32,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:32,123 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-12 00:48:32,126 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-12 00:48:32,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:32,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:32,570 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-12 00:48:32,573 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-12 00:48:32,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:32,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:33,002 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-12 00:48:33,004 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-12 00:48:33,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:33,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:33,429 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-12 00:48:33,431 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-12 00:48:33,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:33,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:33,871 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-12 00:48:33,873 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-12 00:48:34,117 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:34,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:34,300 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-12 00:48:34,302 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-12 00:48:34,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:34,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:34,733 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-12 00:48:34,977 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:35,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:35,167 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-12 00:48:35,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:35,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:35,592 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-12 00:48:35,594 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-12 00:48:35,838 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:36,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:36,022 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-12 00:48:36,266 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:36,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:36,489 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-12 00:48:36,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:36,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:36,927 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-12 00:48:36,929 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-12 00:48:37,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:37,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:37,386 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-12 00:48:37,388 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-12 00:48:37,633 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:37,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:37,839 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-12 00:48:37,841 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-12 00:48:38,085 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:38,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:38,277 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-12 00:48:38,279 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-12 00:48:38,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-12 00:48:38,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-12 00:48:38,721 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-12 00:48:38,721 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-12 00:48:38,809 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fedcb35e2d0> has local changes
2025-08-12 00:48:38,809 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#501 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/501/)'
2025-08-12 00:48:38,822 [ scc.git] DEBUG [detached HEAD f0b80b3] merge master -Dorg -Ssuccess-only
2025-08-12 00:48:38,822 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-12 00:48:38,822 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-12 00:48:38,822 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,822 [ scc.merge] INFO
2025-08-12 00:48:38,822 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,822 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-12 00:48:38,822 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-12 00:48:38,822 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-12 00:48:38,822 [ scc.merge] INFO
2025-08-12 00:48:38,822 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-12 00:48:38,823 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-12 00:48:38,823 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-12 00:48:38,823 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-12 00:48:38,823 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-12 00:48:38,823 [ scc.merge] INFO
2025-08-12 00:48:38,823 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-12 00:48:38,823 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-12 00:48:38,823 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-12 00:48:38,823 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-12 00:48:38,823 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-12 00:48:38,824 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-12 00:48:38,824 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-12 00:48:38,824 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-12 00:48:38,824 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,824 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-12 00:48:38,824 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,824 [ scc.merge] INFO
2025-08-12 00:48:38,824 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-12 00:48:38,825 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-12 00:48:38,825 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-12 00:48:38,825 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-12 00:48:38,825 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-12 00:48:38,825 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-12 00:48:38,825 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,825 [ scc.merge] INFO
2025-08-12 00:48:38,825 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-12 00:48:38,826 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-12 00:48:38,826 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-12 00:48:38,826 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-12 00:48:38,826 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-12 00:48:38,826 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-12 00:48:38,826 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-12 00:48:38,826 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,826 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-12 00:48:38,826 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,826 [ scc.merge] INFO
2025-08-12 00:48:38,826 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-12 00:48:38,827 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-12 00:48:38,827 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-12 00:48:38,827 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-12 00:48:38,827 [ scc.merge] INFO Updating deab817..160d894
2025-08-12 00:48:38,827 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-12 00:48:38,827 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-12 00:48:38,827 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,827 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-12 00:48:38,827 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,827 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-12 00:48:38,827 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,827 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-12 00:48:38,828 [ scc.merge] INFO Already up to date.
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO Repository: ome/scripts
2025-08-12 00:48:38,828 [ scc.merge] INFO Excluded PRs:
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-12 00:48:38,828 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-12 00:48:38,828 [ scc.merge] INFO Previously merged:
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO Merged PRs:
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-12 00:48:38,828 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-12 00:48:38,828 [ scc.merge] INFO
2025-08-12 00:48:38,828 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-12 00:48:38,828 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-12 00:48:38,830 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-12 00:48:38,833 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-12 00:48:38,835 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-12 00:48:38,837 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-12 00:48:38,840 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-12 00:48:38,842 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-12 00:48:38,844 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-12 00:48:38,846 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-12 00:48:38,849 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-12 00:48:38,851 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-12 00:48:38,853 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-12 00:48:38,855 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-12 00:48:38,858 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-12 00:48:38,860 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-12 00:48:38,862 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-12 00:48:38,865 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,867 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,867 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-12 00:48:38,867 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,869 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,869 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-12 00:48:38,869 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,871 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,871 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-12 00:48:38,871 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,873 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,873 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-12 00:48:38,873 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,876 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,876 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-12 00:48:38,876 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-12 00:48:38,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-12 00:48:38,878 [ scc.git] DEBUG Calling 'git remote'
2025-08-12 00:48:38,880 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD af6a4eb] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 209bb30] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-12 00:49:27,609 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-12 00:49:37,393 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-12 00:49:39,985 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-12 00:49:45,085 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-12 00:50:27,639 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
