Skipping 225 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-13 01:00:20,870 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:21,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:21,379 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:21,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-13 01:00:22,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:22,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:22,330 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:00:22,581 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:22,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-13 01:00:23,094 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:23,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-13 01:00:23,623 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:23,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-13 01:00:24,170 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:24,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:24,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:24,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-13 01:00:25,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:25,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:25,404 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-13 01:00:25,404 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:00:25,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-13 01:00:25,405 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:25,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:25,408 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:00:25,410 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:00:25,410 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:00:25,413 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:00:25,416 [ scc.git] DEBUG Already up to date.
2025-08-13 01:00:25,416 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-13 01:00:25,858 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-13 01:00:25,858 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-13 01:00:25,862 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-13 01:00:26,138 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-13 01:00:26,138 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-13 01:00:26,143 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:00:26,143 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:26,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:26,145 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-13 01:00:26,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:26,152 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-13 01:00:26,175 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:00:26,178 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-13 01:00:26,178 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-13 01:00:26,179 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-13 01:00:26,179 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-13 01:00:26,179 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-13 01:00:26,179 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-13 01:00:26,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:26,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:26,364 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-13 01:00:26,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:26,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-13 01:00:26,381 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:00:26,384 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-13 01:00:26,384 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-13 01:00:26,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:26,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:26,812 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:00:26,853 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:26,853 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:26,855 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:00:26,895 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:00:26,899 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15af0216d0> has no local changes
2025-08-13 01:00:26,899 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:00:26,906 [ scc.git] DEBUG [detached HEAD 1ec81f5] merge master -Dorg -Ssuccess-only
2025-08-13 01:00:26,907 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:00:26,907 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:00:27,063 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:27,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-13 01:00:27,666 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:27,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-13 01:00:28,181 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:28,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-13 01:00:28,724 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:29,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-13 01:00:29,274 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:29,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:29,759 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:30,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-13 01:00:30,300 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:30,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:30,501 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-13 01:00:30,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:31,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-13 01:00:31,279 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:31,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-13 01:00:31,769 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:32,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-13 01:00:32,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:32,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:32,803 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:33,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-13 01:00:33,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:33,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:33,495 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-13 01:00:33,495 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:00:33,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-13 01:00:33,496 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:33,496 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:33,498 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:00:33,501 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:00:33,501 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:00:33,504 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:00:33,512 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-13 01:00:33,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:34,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-13 01:00:34,251 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-13 01:00:35,482 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-13 01:00:35,482 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-13 01:00:35,487 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-13 01:00:36,097 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-13 01:00:36,097 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-13 01:00:36,101 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:00:36,101 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:36,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:36,104 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-13 01:00:36,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:36,111 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-13 01:00:36,353 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-13 01:00:36,353 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-13 01:00:36,353 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-13 01:00:36,353 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-13 01:00:36,353 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:00:36,353 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:00:36,356 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-13 01:00:36,361 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-13 01:00:36,362 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:36,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:36,555 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-13 01:00:36,559 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-13 01:00:36,563 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-13 01:00:36,565 [ scc.config] DEBUG Found github.token
2025-08-13 01:00:36,565 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-13 01:00:36,565 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-13 01:00:36,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:36,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-13 01:00:36,621 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-13 01:00:36,621 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-13 01:00:36,621 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-13 01:00:36,621 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:00:36,622 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:00:36,625 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-13 01:00:36,630 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-13 01:00:36,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:36,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:36,994 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-13 01:00:36,999 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-13 01:00:37,002 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-13 01:00:37,004 [ scc.config] DEBUG Found github.token
2025-08-13 01:00:37,004 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-13 01:00:37,004 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:00:37,044 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:37,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:37,047 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:00:37,086 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:00:37,091 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15aefc3fd0> has no local changes
2025-08-13 01:00:37,091 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:00:37,098 [ scc.git] DEBUG [detached HEAD c8bdab8] merge master -Dorg -Ssuccess-only
2025-08-13 01:00:37,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:00:37,098 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:00:37,245 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:37,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-13 01:00:37,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:38,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-13 01:00:38,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:38,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-13 01:00:38,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:39,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:39,532 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:39,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:00:40,061 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:40,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-13 01:00:40,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:40,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:40,729 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:00:40,980 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:41,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-13 01:00:41,269 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-13 01:00:41,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:41,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-13 01:00:42,143 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:42,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:42,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:42,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:00:43,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:43,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-13 01:00:43,844 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:44,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:44,085 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-13 01:00:44,336 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:44,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-13 01:00:44,590 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-13 01:00:44,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:45,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-13 01:00:45,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:45,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:45,958 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:46,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:00:46,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:46,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-13 01:00:47,133 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:47,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:00:47,352 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-13 01:00:47,603 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:47,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-13 01:00:48,109 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:48,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-13 01:00:48,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:48,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-13 01:00:49,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:49,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-13 01:00:49,658 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:49,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-13 01:00:50,155 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:50,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-13 01:00:50,693 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:50,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-13 01:00:50,935 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:00:50,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-13 01:00:50,935 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:50,935 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:50,937 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:00:50,940 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:00:50,940 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:00:50,943 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:00:50,946 [ scc.git] DEBUG Already up to date.
2025-08-13 01:00:50,946 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-13 01:00:51,221 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-13 01:00:51,221 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-13 01:00:51,225 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-13 01:00:51,511 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-13 01:00:51,512 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-13 01:00:51,516 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-13 01:00:51,845 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-13 01:00:51,845 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-13 01:00:51,849 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:00:51,849 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:51,849 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:51,852 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-13 01:00:51,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:51,909 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-13 01:00:52,062 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:00:52,066 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-13 01:00:52,066 [ scc.git] DEBUG package.json | 2 +-
2025-08-13 01:00:52,066 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-13 01:00:52,067 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:52,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:52,302 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-13 01:00:52,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:52,341 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-13 01:00:52,424 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-13 01:00:52,424 [ scc.git] DEBUG Auto-merging package.json
2025-08-13 01:00:52,425 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:00:52,429 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-13 01:00:52,429 [ scc.git] DEBUG package.json | 2 +-
2025-08-13 01:00:52,429 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-13 01:00:52,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:52,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:52,749 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-13 01:00:52,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:52,755 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-13 01:00:52,765 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:00:52,768 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-13 01:00:52,768 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-13 01:00:53,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:53,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:00:53,208 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:00:53,248 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:53,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:53,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:00:53,291 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:00:53,295 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15aefe9250> has no local changes
2025-08-13 01:00:53,295 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:00:53,302 [ scc.git] DEBUG [detached HEAD da59904] merge master -Dorg -Ssuccess-only
2025-08-13 01:00:53,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:00:53,302 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:00:53,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:53,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-13 01:00:53,660 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:00:53,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-13 01:00:53,660 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:53,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:53,663 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:00:53,665 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:00:53,665 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:00:53,668 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:00:53,671 [ scc.git] DEBUG Already up to date.
2025-08-13 01:00:53,671 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:00:53,671 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:53,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:53,673 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:00:53,712 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:53,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:53,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:00:53,752 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:00:53,755 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac6340d0> has no local changes
2025-08-13 01:00:53,756 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:00:53,762 [ scc.git] DEBUG [detached HEAD 6cb136b] merge master -Dorg -Ssuccess-only
2025-08-13 01:00:53,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:00:53,762 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:00:53,911 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:54,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-13 01:00:54,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:54,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-13 01:00:55,020 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:55,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-13 01:00:55,517 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:55,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-13 01:00:56,087 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:56,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:56,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:56,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:00:57,154 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:57,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-13 01:00:57,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:57,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-13 01:00:58,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:58,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-13 01:00:58,694 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:58,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-13 01:00:58,933 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-13 01:00:59,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:00:59,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-13 01:00:59,491 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:00:59,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-13 01:00:59,491 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:00:59,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:00:59,494 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:00:59,496 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:00:59,496 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:00:59,500 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:00:59,503 [ scc.git] DEBUG Already up to date.
2025-08-13 01:00:59,503 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-13 01:01:00,463 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-13 01:01:00,464 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-13 01:01:00,469 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:00,469 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:00,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:00,472 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-13 01:01:00,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:00,477 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-13 01:01:00,486 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:01:00,489 [ scc.git] DEBUG setup.py | 4 +-
2025-08-13 01:01:00,489 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-13 01:01:00,489 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-13 01:01:00,489 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-13 01:01:00,490 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:00,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:00,680 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:00,721 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:00,721 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:00,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:00,763 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:00,766 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15af0f7e50> has no local changes
2025-08-13 01:01:00,766 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:00,773 [ scc.git] DEBUG [detached HEAD bb41575] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:00,774 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:00,774 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:00,931 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:01,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-13 01:01:01,590 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:01,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-13 01:01:02,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:02,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-13 01:01:02,599 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:02,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-13 01:01:03,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:03,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:03,706 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:03,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-13 01:01:04,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:04,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:04,411 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-13 01:01:04,412 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:04,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-13 01:01:04,412 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:04,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:04,414 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:04,417 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:04,417 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:04,420 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:04,423 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:04,423 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-13 01:01:04,877 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-13 01:01:04,877 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-13 01:01:04,881 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:04,881 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:04,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:04,884 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-13 01:01:04,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:04,890 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-13 01:01:05,055 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG Auto-merging setup.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-13 01:01:05,055 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:01:05,056 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:01:05,058 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-13 01:01:05,063 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-13 01:01:05,064 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:05,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:05,264 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-13 01:01:05,267 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-13 01:01:05,271 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
--conflicts
2025-08-13 01:01:05,273 [ scc.config] DEBUG Found github.token
2025-08-13 01:01:05,273 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-13 01:01:05,273 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:05,315 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:05,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:05,317 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:05,356 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:05,360 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac650550> has no local changes
2025-08-13 01:01:05,360 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:05,367 [ scc.git] DEBUG [detached HEAD 120bd32] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:05,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:05,367 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:05,515 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:05,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-13 01:01:06,138 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:06,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-13 01:01:06,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:07,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-13 01:01:07,300 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:07,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:07,898 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:08,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:01:08,408 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:08,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-13 01:01:08,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:09,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:09,181 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-13 01:01:09,432 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:09,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-13 01:01:10,062 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:10,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-13 01:01:10,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:10,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-13 01:01:11,098 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:11,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:11,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:11,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:01:12,189 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:12,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-13 01:01:12,739 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:12,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-13 01:01:13,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:13,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-13 01:01:13,715 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:13,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-13 01:01:14,212 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:14,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-13 01:01:14,765 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:14,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:15,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:15,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-13 01:01:15,800 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:16,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:16,027 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-13 01:01:16,028 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:16,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-13 01:01:16,028 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:16,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:16,031 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:16,033 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:16,033 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:16,036 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:16,039 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:16,040 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-13 01:01:16,361 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-13 01:01:16,361 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-13 01:01:16,366 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-13 01:01:16,702 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-13 01:01:16,702 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-13 01:01:16,706 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:16,706 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:16,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:16,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-13 01:01:16,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:16,716 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-13 01:01:16,773 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-13 01:01:16,777 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-13 01:01:16,778 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-13 01:01:16,778 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-13 01:01:16,779 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-13 01:01:16,779 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-13 01:01:16,779 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-13 01:01:16,780 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-13 01:01:16,780 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-13 01:01:16,780 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-13 01:01:16,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:16,966 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-13 01:01:16,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:16,973 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-13 01:01:16,983 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:01:16,986 [ scc.git] DEBUG docker | 1 +
2025-08-13 01:01:16,986 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-13 01:01:17,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:17,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:17,429 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:17,470 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:17,470 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:17,472 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:17,511 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:17,516 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac65ce90> has no local changes
2025-08-13 01:01:17,516 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:17,522 [ scc.git] DEBUG [detached HEAD 84e82ec] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:17,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:17,522 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:17,680 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:17,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-13 01:01:17,893 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:17,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-13 01:01:17,894 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:17,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:17,896 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:17,899 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:17,899 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:17,902 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:17,905 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:17,905 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:17,905 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:17,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:17,907 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:17,947 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:17,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:17,950 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:17,988 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:17,992 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac690650> has no local changes
2025-08-13 01:01:17,992 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:18,053 [ scc.git] DEBUG [detached HEAD 5634a0a] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:18,053 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:18,054 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:18,145 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:18,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-13 01:01:18,346 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:18,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-13 01:01:18,346 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:18,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:18,348 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:18,351 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:18,351 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:18,354 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:18,362 [ scc.git] DEBUG Updating deab817..160d894
2025-08-13 01:01:18,597 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:19,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-13 01:01:19,048 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:19,048 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:19,048 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:19,051 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:19,091 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:19,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:19,094 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:19,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:19,136 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15af022a10> has no local changes
2025-08-13 01:01:19,136 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:19,143 [ scc.git] DEBUG [detached HEAD 4c1ca12] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:19,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:19,144 [ scc.git] INFO Overriding base-branch from master to main
2025-08-13 01:01:19,144 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:19,298 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:19,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-13 01:01:19,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:20,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-13 01:01:20,322 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:20,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-13 01:01:20,796 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:21,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-13 01:01:21,416 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:21,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:21,951 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:22,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:01:22,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:22,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-13 01:01:22,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:23,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-13 01:01:23,507 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:23,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-13 01:01:24,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:24,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-13 01:01:24,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:24,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:25,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:25,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-13 01:01:25,607 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:25,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:25,807 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-13 01:01:25,807 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:25,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-13 01:01:25,808 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:25,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:25,811 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-13 01:01:25,813 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:25,813 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-13 01:01:25,816 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-13 01:01:25,819 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:25,819 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-13 01:01:26,139 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-13 01:01:26,139 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-13 01:01:26,144 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:26,144 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:26,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,146 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-13 01:01:26,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,151 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-13 01:01:26,189 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-13 01:01:26,189 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-13 01:01:26,189 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:01:26,189 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:01:26,192 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-13 01:01:26,197 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-13 01:01:26,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:26,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:26,388 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-13 01:01:26,391 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-13 01:01:26,394 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-13 01:01:26,396 [ scc.config] DEBUG Found github.token
2025-08-13 01:01:26,396 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-13 01:01:26,396 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:26,437 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:26,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,439 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:26,481 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:26,485 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac64d090> has no local changes
2025-08-13 01:01:26,485 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:26,491 [ scc.git] DEBUG [detached HEAD e5baf74] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:26,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:26,492 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:26,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:26,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-13 01:01:26,858 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:26,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-13 01:01:26,858 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:26,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,860 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:26,863 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:26,863 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:26,866 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:26,869 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:26,869 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:26,869 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:26,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,872 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:26,911 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:26,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:26,914 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:26,954 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:26,957 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac679790> has no local changes
2025-08-13 01:01:26,957 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:26,964 [ scc.git] DEBUG [detached HEAD 60df66e] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:26,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:26,964 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:27,109 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:27,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-13 01:01:27,314 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:27,314 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-13 01:01:27,314 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:27,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:27,316 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:27,318 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:27,318 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:27,321 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:27,324 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:27,324 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:27,325 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:27,325 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:27,327 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:27,364 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:27,365 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:27,367 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:27,405 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:27,408 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac62fd10> has no local changes
2025-08-13 01:01:27,408 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:27,415 [ scc.git] DEBUG [detached HEAD 802e2d3] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:27,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:27,415 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:27,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:27,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-13 01:01:28,116 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:28,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-13 01:01:28,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:28,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-13 01:01:29,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:29,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-13 01:01:29,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:29,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:30,204 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:30,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-13 01:01:30,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:30,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:30,939 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-13 01:01:30,939 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:30,939 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-13 01:01:30,939 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:30,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:30,942 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-13 01:01:30,944 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:30,944 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-13 01:01:30,947 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-13 01:01:30,950 [ scc.git] DEBUG Already up to date.
2025-08-13 01:01:30,951 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-13 01:01:31,296 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-13 01:01:31,296 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-13 01:01:31,300 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:31,300 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:31,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:31,303 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-13 01:01:31,306 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:31,308 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-13 01:01:31,433 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-13 01:01:31,433 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-13 01:01:31,433 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:01:31,434 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:01:31,437 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-13 01:01:31,442 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-13 01:01:31,443 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:31,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:31,628 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-13 01:01:31,630 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-13 01:01:31,633 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-13 01:01:31,635 [ scc.config] DEBUG Found github.token
2025-08-13 01:01:31,635 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-13 01:01:31,635 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:31,677 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:31,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:31,679 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:31,718 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:31,722 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac6aab10> has no local changes
2025-08-13 01:01:31,722 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:31,729 [ scc.git] DEBUG [detached HEAD bf037dc] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:31,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:31,729 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-13 01:01:31,729 [ scc.repo] DEBUG ## PRs found:
2025-08-13 01:01:31,879 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:32,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-13 01:01:32,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:32,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-13 01:01:32,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:33,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-13 01:01:33,445 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:33,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-13 01:01:34,002 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:34,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:34,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:34,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-13 01:01:35,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:35,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-13 01:01:35,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:35,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:35,760 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-13 01:01:36,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:36,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-13 01:01:36,528 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:36,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-13 01:01:37,010 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:37,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-13 01:01:37,484 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:37,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-13 01:01:38,002 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:38,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-13 01:01:38,482 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:38,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-13 01:01:38,694 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-13 01:01:38,945 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:39,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-13 01:01:39,490 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:39,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-13 01:01:40,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:40,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-13 01:01:40,567 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:40,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-13 01:01:40,840 [ scc.repo] DEBUG ## Branches found:
2025-08-13 01:01:40,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-13 01:01:40,840 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:40,840 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:40,843 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-13 01:01:40,846 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-13 01:01:40,846 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-13 01:01:40,849 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-13 01:01:40,860 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-13 01:01:41,089 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:41,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-13 01:01:41,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:42,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-13 01:01:42,210 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-13 01:01:42,826 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-13 01:01:42,826 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-13 01:01:42,831 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-13 01:01:43,273 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-13 01:01:43,274 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-13 01:01:43,278 [ scc.git] DEBUG ## Unique users: []
2025-08-13 01:01:43,278 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:43,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:43,281 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-13 01:01:43,287 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:43,289 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-13 01:01:43,398 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-13 01:01:43,398 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-13 01:01:43,398 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-13 01:01:43,401 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-13 01:01:43,405 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-13 01:01:43,406 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:43,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:43,618 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-13 01:01:43,623 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-13 01:01:43,627 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#502](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-13 01:01:43,630 [ scc.config] DEBUG Found github.token
2025-08-13 01:01:43,630 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-13 01:01:43,630 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-13 01:01:43,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:43,637 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-13 01:01:43,647 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-13 01:01:43,650 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-13 01:01:43,650 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-13 01:01:43,869 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:44,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:44,052 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-13 01:01:44,094 [ scc.git] DEBUG Get sha1 of %s
2025-08-13 01:01:44,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-13 01:01:44,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:44,136 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:44,140 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15ac6e6490> has no local changes
2025-08-13 01:01:44,140 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:44,147 [ scc.git] DEBUG [detached HEAD 8bb6e67] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:44,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:44,147 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-13 01:01:44,226 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-13 01:01:44,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:44,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:44,487 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-13 01:01:44,489 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-13 01:01:44,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:44,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:44,942 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-13 01:01:44,945 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-13 01:01:45,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:45,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:45,376 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-13 01:01:45,378 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-13 01:01:45,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:45,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:45,826 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-13 01:01:46,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:46,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:46,260 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-13 01:01:46,262 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-13 01:01:46,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:46,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:46,690 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-13 01:01:46,692 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-13 01:01:46,936 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:47,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:47,139 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-13 01:01:47,141 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-13 01:01:47,385 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:47,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:47,602 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-13 01:01:47,604 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-13 01:01:47,848 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:48,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:48,038 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-13 01:01:48,041 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-13 01:01:48,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:48,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:48,494 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-13 01:01:48,496 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-13 01:01:48,740 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:48,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:48,934 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-13 01:01:48,937 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-13 01:01:49,181 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:49,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:49,382 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-13 01:01:49,384 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-13 01:01:49,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:49,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:49,827 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-13 01:01:50,071 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:50,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:50,302 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-13 01:01:50,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:50,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:50,744 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-13 01:01:50,746 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-13 01:01:50,990 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:51,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:51,236 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-13 01:01:51,480 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:51,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:51,709 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-13 01:01:51,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:52,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:52,139 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-13 01:01:52,141 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-13 01:01:52,385 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:52,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:52,610 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-13 01:01:52,612 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-13 01:01:52,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:53,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:53,068 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-13 01:01:53,070 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-13 01:01:53,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:53,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:53,523 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-13 01:01:53,525 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-13 01:01:53,770 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-13 01:01:53,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-13 01:01:53,949 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-13 01:01:53,949 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-13 01:01:54,038 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f15af0352d0> has local changes
2025-08-13 01:01:54,038 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 180 will-moore 'Register command' (status: failure)
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#502 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/502/)'
2025-08-13 01:01:54,051 [ scc.git] DEBUG [detached HEAD 6475ac3] merge master -Dorg -Ssuccess-only
2025-08-13 01:01:54,051 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-13 01:01:54,052 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-13 01:01:54,052 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-13 01:01:54,052 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-13 01:01:54,052 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-13 01:01:54,052 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-13 01:01:54,052 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-13 01:01:54,052 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,052 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-13 01:01:54,052 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-13 01:01:54,052 [ scc.merge] INFO
2025-08-13 01:01:54,053 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-13 01:01:54,053 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 180 will-moore 'Register command' (status: failure)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-13 01:01:54,053 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-13 01:01:54,053 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,053 [ scc.merge] INFO
2025-08-13 01:01:54,053 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-13 01:01:54,053 [ scc.merge] INFO
2025-08-13 01:01:54,053 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-13 01:01:54,053 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-13 01:01:54,053 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-13 01:01:54,053 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,053 [ scc.merge] INFO
2025-08-13 01:01:54,053 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-13 01:01:54,053 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-13 01:01:54,054 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-13 01:01:54,054 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-13 01:01:54,054 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-13 01:01:54,054 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-13 01:01:54,054 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,054 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,054 [ scc.merge] INFO
2025-08-13 01:01:54,054 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-13 01:01:54,055 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-13 01:01:54,055 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-13 01:01:54,055 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-13 01:01:54,055 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-13 01:01:54,055 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-13 01:01:54,055 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-13 01:01:54,055 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-13 01:01:54,055 [ scc.merge] INFO
2025-08-13 01:01:54,055 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-13 01:01:54,056 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-13 01:01:54,056 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-13 01:01:54,056 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-13 01:01:54,056 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-13 01:01:54,056 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-13 01:01:54,056 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-13 01:01:54,056 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-13 01:01:54,056 [ scc.merge] INFO Updating deab817..160d894
2025-08-13 01:01:54,056 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,056 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO
2025-08-13 01:01:54,056 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-13 01:01:54,056 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-13 01:01:54,057 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-13 01:01:54,057 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-13 01:01:54,057 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-13 01:01:54,057 [ scc.merge] INFO Already up to date.
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Repository: ome/scripts
2025-08-13 01:01:54,057 [ scc.merge] INFO Excluded PRs:
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-13 01:01:54,057 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-13 01:01:54,057 [ scc.merge] INFO Previously merged:
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Merged PRs:
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-13 01:01:54,057 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-13 01:01:54,057 [ scc.merge] INFO
2025-08-13 01:01:54,057 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-13 01:01:54,057 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,060 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-13 01:01:54,060 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-13 01:01:54,062 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-13 01:01:54,064 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-13 01:01:54,067 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-13 01:01:54,069 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-13 01:01:54,071 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-13 01:01:54,074 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-13 01:01:54,076 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-13 01:01:54,079 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-13 01:01:54,081 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-13 01:01:54,083 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-13 01:01:54,085 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-13 01:01:54,088 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-13 01:01:54,090 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-13 01:01:54,092 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-13 01:01:54,094 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-13 01:01:54,097 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-13 01:01:54,099 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-13 01:01:54,101 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,103 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,103 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-13 01:01:54,103 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-13 01:01:54,105 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-13 01:01:54,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-13 01:01:54,108 [ scc.git] DEBUG Calling 'git remote'
2025-08-13 01:01:54,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 9796575] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 75f1fdc] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-13 01:02:44,042 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-13 01:02:54,042 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-13 01:02:56,689 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-13 01:03:01,846 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-13 01:03:44,664 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
