Skipping 235 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-29 00:47:51,901 [ scc.git] DEBUG [detached HEAD 4b3f054] merge master -Dorg -Ssuccess-only
2025-08-29 00:47:51,901 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:47:51,901 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:47:52,057 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:52,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-29 00:47:52,636 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:52,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-29 00:47:53,163 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:53,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-29 00:47:53,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:54,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-29 00:47:54,323 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:54,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:47:54,819 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:55,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-29 00:47:55,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:55,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:47:55,594 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-29 00:47:55,846 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:56,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-29 00:47:56,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:56,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-29 00:47:56,918 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:57,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-29 00:47:57,483 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:57,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:47:57,977 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:58,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-29 00:47:58,525 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:58,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:47:58,745 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-29 00:47:58,745 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:47:58,745 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-29 00:47:58,745 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:47:58,745 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:47:58,748 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:47:58,751 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:47:58,751 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:47:58,754 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:47:58,762 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-29 00:47:58,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:47:59,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-29 00:47:59,464 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-29 00:47:59,763 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-29 00:47:59,763 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-29 00:47:59,767 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-29 00:48:00,049 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-29 00:48:00,049 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-29 00:48:00,054 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:00,054 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:00,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:00,057 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-29 00:48:00,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:00,064 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-29 00:48:00,077 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-29 00:48:00,078 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-29 00:48:00,078 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-29 00:48:00,078 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-29 00:48:00,078 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:48:00,078 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:48:00,081 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-29 00:48:00,086 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-29 00:48:00,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:00,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:00,289 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-29 00:48:00,294 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-29 00:48:00,298 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-08-29 00:48:00,300 [ scc.config] DEBUG Found github.token
2025-08-29 00:48:00,300 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-29 00:48:00,300 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-29 00:48:00,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:00,307 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-29 00:48:00,322 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-29 00:48:00,322 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-29 00:48:00,322 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-29 00:48:00,322 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:48:00,323 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:48:00,325 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-29 00:48:00,332 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-29 00:48:00,542 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:00,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:00,739 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-29 00:48:00,744 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-29 00:48:00,747 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-29 00:48:00,749 [ scc.config] DEBUG Found github.token
2025-08-29 00:48:00,749 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-29 00:48:00,749 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:00,792 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:00,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:00,794 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:00,834 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:00,839 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0f8f8290> has no local changes
2025-08-29 00:48:00,839 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:00,846 [ scc.git] DEBUG [detached HEAD 0b5b52f] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:00,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:00,847 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:00,992 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:01,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-29 00:48:01,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:01,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-29 00:48:02,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:02,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-29 00:48:02,707 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:02,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:03,234 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:03,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:03,767 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:03,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-29 00:48:04,233 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:04,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:04,479 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:48:04,731 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:04,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-29 00:48:04,996 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-29 00:48:05,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:05,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-29 00:48:05,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:06,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:06,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:06,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:07,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:07,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-29 00:48:07,612 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:07,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:07,823 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-29 00:48:08,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:08,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-29 00:48:08,385 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-29 00:48:08,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:08,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-29 00:48:09,214 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:09,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:09,771 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:10,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:10,426 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:10,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-29 00:48:10,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:11,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:11,168 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-29 00:48:11,420 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:11,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-29 00:48:11,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:12,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-29 00:48:12,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:12,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-29 00:48:12,958 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:13,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-29 00:48:13,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:13,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-29 00:48:13,993 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:14,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-29 00:48:14,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:14,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-29 00:48:14,807 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:14,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-29 00:48:14,807 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:14,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:14,810 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:14,813 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:14,813 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:14,816 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:14,819 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:14,819 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-29 00:48:15,104 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-29 00:48:15,104 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-29 00:48:15,108 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-29 00:48:15,420 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-29 00:48:15,421 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-29 00:48:15,425 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-29 00:48:15,760 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-29 00:48:15,760 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-29 00:48:15,764 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:15,764 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:15,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:15,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-29 00:48:15,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:15,772 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-29 00:48:15,780 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:15,784 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-29 00:48:15,784 [ scc.git] DEBUG package.json | 2 +-
2025-08-29 00:48:15,784 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-29 00:48:15,787 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:15,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:15,984 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-29 00:48:15,987 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:15,990 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-29 00:48:16,000 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-29 00:48:16,000 [ scc.git] DEBUG Auto-merging package.json
2025-08-29 00:48:16,001 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:16,005 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-29 00:48:16,005 [ scc.git] DEBUG package.json | 2 +-
2025-08-29 00:48:16,005 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-29 00:48:16,236 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:16,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:16,428 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-29 00:48:16,431 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:16,434 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-29 00:48:16,443 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:16,446 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-29 00:48:16,446 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-29 00:48:16,680 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:16,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:16,892 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:16,936 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:16,936 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:16,938 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:16,978 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:16,982 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c612250> has no local changes
2025-08-29 00:48:16,982 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:16,990 [ scc.git] DEBUG [detached HEAD 8c94d85] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:16,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:16,990 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:17,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:17,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-29 00:48:17,358 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:17,358 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-29 00:48:17,358 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:17,358 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:17,360 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:17,363 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:17,363 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:17,366 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:17,369 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:17,369 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:17,369 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:17,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:17,371 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:17,411 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:17,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:17,414 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:17,455 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:17,458 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0f82c550> has no local changes
2025-08-29 00:48:17,458 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:17,465 [ scc.git] DEBUG [detached HEAD d46ee5b] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:17,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:17,465 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:17,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:17,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-29 00:48:18,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:18,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-29 00:48:18,728 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:18,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-29 00:48:19,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:19,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-29 00:48:19,858 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:20,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:20,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:20,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:20,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:21,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-29 00:48:21,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:21,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:22,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:22,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-29 00:48:22,533 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:22,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-29 00:48:22,870 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-29 00:48:23,121 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:23,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-29 00:48:23,401 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:23,401 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-29 00:48:23,402 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:23,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:23,404 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:23,407 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:23,407 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:23,410 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:23,413 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:23,413 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-29 00:48:23,705 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-29 00:48:23,705 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-29 00:48:23,710 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:23,710 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:23,710 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:23,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-29 00:48:23,716 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:23,718 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-29 00:48:23,727 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:23,730 [ scc.git] DEBUG setup.py | 4 +-
2025-08-29 00:48:23,730 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-29 00:48:23,730 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-29 00:48:23,730 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-29 00:48:23,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:23,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:23,934 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:23,978 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:23,978 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:23,980 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:24,021 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:24,025 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c625d50> has no local changes
2025-08-29 00:48:24,025 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:24,031 [ scc.git] DEBUG [detached HEAD dfb2cf4] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:24,032 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:24,032 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:24,187 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:24,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-29 00:48:24,789 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:25,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-29 00:48:25,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:25,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-29 00:48:25,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:26,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-29 00:48:26,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:26,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:26,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:27,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-29 00:48:27,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:27,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:27,694 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-29 00:48:27,694 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:27,695 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-29 00:48:27,695 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:27,695 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:27,698 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:27,700 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:27,700 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:27,703 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:27,706 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:27,706 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-29 00:48:28,009 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-29 00:48:28,009 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-29 00:48:28,013 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:28,013 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:28,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:28,016 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-29 00:48:28,019 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:28,022 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-29 00:48:28,031 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG Auto-merging setup.py
2025-08-29 00:48:28,031 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-29 00:48:28,032 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:48:28,032 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:48:28,035 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-29 00:48:28,039 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-29 00:48:28,042 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:28,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:28,240 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-29 00:48:28,243 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-29 00:48:28,246 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
--conflicts
2025-08-29 00:48:28,248 [ scc.config] DEBUG Found github.token
2025-08-29 00:48:28,248 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-29 00:48:28,249 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:28,290 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:28,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:28,293 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:28,332 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:28,335 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c641d50> has no local changes
2025-08-29 00:48:28,335 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:28,342 [ scc.git] DEBUG [detached HEAD c740542] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:28,343 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:28,343 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:28,492 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:28,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-29 00:48:29,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:29,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-29 00:48:29,594 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:29,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-29 00:48:30,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:30,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:30,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:31,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:31,257 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:31,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-29 00:48:31,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:31,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:31,958 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-29 00:48:32,209 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:32,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-29 00:48:32,722 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:32,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-29 00:48:33,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:33,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-29 00:48:33,888 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:34,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:34,471 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:34,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:35,058 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:35,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-29 00:48:35,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:35,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-29 00:48:36,154 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:36,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-29 00:48:36,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:36,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-29 00:48:37,167 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:37,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-29 00:48:37,740 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:37,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:38,218 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:38,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-29 00:48:38,780 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:38,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:38,979 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-29 00:48:38,980 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:38,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-29 00:48:38,980 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:38,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:38,983 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:38,985 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:38,985 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:38,988 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:38,992 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:38,992 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-29 00:48:39,306 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-29 00:48:39,306 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-29 00:48:39,311 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-29 00:48:39,592 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-29 00:48:39,592 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-29 00:48:39,597 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:39,597 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:39,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:39,599 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-29 00:48:39,604 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:39,606 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-29 00:48:39,619 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:39,623 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-29 00:48:39,623 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-29 00:48:39,623 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-29 00:48:39,623 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-29 00:48:39,623 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-29 00:48:39,625 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-29 00:48:39,625 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-29 00:48:39,626 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-29 00:48:39,626 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-29 00:48:39,626 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-29 00:48:39,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:39,824 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-29 00:48:39,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:39,830 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-29 00:48:39,841 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:39,844 [ scc.git] DEBUG docker | 1 +
2025-08-29 00:48:39,844 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-29 00:48:40,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:40,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:40,277 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:40,319 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:40,319 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:40,322 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:40,362 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:40,366 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c622410> has no local changes
2025-08-29 00:48:40,366 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:40,373 [ scc.git] DEBUG [detached HEAD 377b783] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:40,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:40,373 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:40,529 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:40,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-29 00:48:40,753 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:40,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-29 00:48:40,753 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:40,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:40,756 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:40,758 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:40,758 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:40,761 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:40,764 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:40,764 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:40,764 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:40,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:40,767 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:40,808 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:40,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:40,810 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:40,849 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:40,853 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c64bf50> has no local changes
2025-08-29 00:48:40,853 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:40,860 [ scc.git] DEBUG [detached HEAD bd086ea] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:40,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:40,860 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:41,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:41,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-29 00:48:41,244 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:41,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-29 00:48:41,245 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:41,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:41,247 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:41,250 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:41,250 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:41,253 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:41,261 [ scc.git] DEBUG Updating deab817..160d894
2025-08-29 00:48:41,497 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:42,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-29 00:48:42,052 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:42,052 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:42,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:42,055 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:42,096 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:42,096 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:42,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:42,140 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:42,144 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0f7f1950> has no local changes
2025-08-29 00:48:42,144 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:42,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:42,151 [ scc.git] DEBUG [detached HEAD 32be2c3] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:42,151 [ scc.git] INFO Overriding base-branch from master to main
2025-08-29 00:48:42,151 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:42,304 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:42,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-29 00:48:42,904 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:43,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-08-29 00:48:43,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:43,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2 HTTP/1.1" 200 None
2025-08-29 00:48:43,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:44,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:44,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:44,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:45,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:45,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2 HTTP/1.1" 200 None
2025-08-29 00:48:45,627 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:45,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:45,829 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-08-29 00:48:46,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:46,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-29 00:48:46,595 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:46,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-08-29 00:48:47,092 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:47,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-29 00:48:47,658 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:47,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:48,189 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:48,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:48,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:48,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-29 00:48:49,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:49,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:49,458 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-29 00:48:49,710 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:49,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-29 00:48:50,213 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:50,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-29 00:48:50,739 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:51,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-29 00:48:51,332 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:51,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:51,846 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:52,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:48:52,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:52,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-29 00:48:52,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:53,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-29 00:48:53,476 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:53,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-29 00:48:54,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:54,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-29 00:48:54,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:54,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:48:55,036 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:55,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-29 00:48:55,526 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:55,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:48:55,728 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-29 00:48:55,728 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:55,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-29 00:48:55,728 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:55,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:55,731 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-29 00:48:55,733 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:55,734 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-29 00:48:55,737 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-29 00:48:55,740 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:55,740 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-29 00:48:56,031 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-29 00:48:56,032 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-29 00:48:56,036 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-29 00:48:56,320 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-29 00:48:56,320 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-29 00:48:56,324 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-08-29 00:48:56,618 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-29 00:48:56,618 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-08-29 00:48:56,622 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:56,622 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:56,622 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:56,625 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-29 00:48:56,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:56,630 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-29 00:48:56,638 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-29 00:48:56,638 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-29 00:48:56,639 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:48:56,639 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:48:56,642 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-29 00:48:56,646 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-29 00:48:56,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:56,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:56,866 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-29 00:48:56,870 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-29 00:48:56,873 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-29 00:48:56,875 [ scc.config] DEBUG Found github.token
2025-08-29 00:48:56,875 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-29 00:48:56,875 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-29 00:48:56,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:56,880 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-29 00:48:56,888 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:56,891 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-29 00:48:56,891 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-29 00:48:57,119 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:57,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:57,307 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2'
2025-08-29 00:48:57,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:57,313 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) 5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2'
2025-08-29 00:48:57,322 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-08-29 00:48:57,323 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:48:57,327 [ scc.git] DEBUG README.rst | 3 +
2025-08-29 00:48:57,327 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 299 +++++++++++++++++++++
2025-08-29 00:48:57,327 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-08-29 00:48:57,327 [ scc.git] DEBUG omero_web_zarr/views.py | 41 ++-
2025-08-29 00:48:57,327 [ scc.git] DEBUG setup.py | 5 +-
2025-08-29 00:48:57,327 [ scc.git] DEBUG 5 files changed, 348 insertions(+), 2 deletions(-)
2025-08-29 00:48:57,327 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-08-29 00:48:57,559 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:57,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:48:57,749 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:57,792 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:57,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:57,794 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:57,834 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:57,838 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c63e490> has no local changes
2025-08-29 00:48:57,838 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:57,845 [ scc.git] DEBUG [detached HEAD 5996e80] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:57,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:57,846 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:58,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:58,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-29 00:48:58,216 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:58,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-29 00:48:58,216 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,216 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,219 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:58,221 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:58,221 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:58,224 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:58,227 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:58,227 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:58,227 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,227 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,230 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:58,269 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,271 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:58,311 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:58,315 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c62e8d0> has no local changes
2025-08-29 00:48:58,315 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:58,321 [ scc.git] DEBUG [detached HEAD d9a6f93] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:58,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:58,321 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:58,468 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:58,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-29 00:48:58,691 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:48:58,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-29 00:48:58,691 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,691 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,694 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:48:58,696 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:48:58,696 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:48:58,699 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:48:58,702 [ scc.git] DEBUG Already up to date.
2025-08-29 00:48:58,702 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:48:58,702 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,704 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:48:58,743 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:48:58,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:48:58,745 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:48:58,785 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:48:58,789 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c688690> has no local changes
2025-08-29 00:48:58,789 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:48:58,795 [ scc.git] DEBUG [detached HEAD a6c4c80] merge master -Dorg -Ssuccess-only
2025-08-29 00:48:58,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:48:58,796 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:48:58,943 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:59,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-29 00:48:59,543 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:48:59,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-29 00:49:00,080 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:00,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-29 00:49:00,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:00,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-29 00:49:01,164 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:01,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:49:02,016 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:02,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-29 00:49:02,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:03,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:49:03,185 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-29 00:49:03,185 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:49:03,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-29 00:49:03,185 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:03,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:03,188 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-29 00:49:03,190 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:49:03,190 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-29 00:49:03,193 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-29 00:49:03,196 [ scc.git] DEBUG Already up to date.
2025-08-29 00:49:03,197 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-29 00:49:03,477 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-29 00:49:03,477 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-29 00:49:03,481 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:49:03,481 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:03,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:03,484 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-29 00:49:03,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:03,489 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-29 00:49:03,498 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-29 00:49:03,498 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-29 00:49:03,498 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:49:03,499 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:49:03,502 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-29 00:49:03,507 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-29 00:49:03,509 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:03,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:03,702 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-29 00:49:03,705 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-29 00:49:03,708 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-29 00:49:03,710 [ scc.config] DEBUG Found github.token
2025-08-29 00:49:03,710 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-29 00:49:03,710 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:49:03,751 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:03,751 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:03,754 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:49:03,796 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:49:03,800 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c6cec90> has no local changes
2025-08-29 00:49:03,800 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:49:03,807 [ scc.git] DEBUG [detached HEAD 0648c33] merge master -Dorg -Ssuccess-only
2025-08-29 00:49:03,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:03,807 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-29 00:49:03,807 [ scc.repo] DEBUG ## PRs found:
2025-08-29 00:49:03,954 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:04,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-29 00:49:04,509 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:04,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-29 00:49:05,080 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:05,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-29 00:49:05,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:05,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-29 00:49:06,115 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:06,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:49:06,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:06,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-29 00:49:07,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:07,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-29 00:49:07,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:07,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:49:07,920 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-29 00:49:08,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:08,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-29 00:49:08,660 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:08,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-29 00:49:09,166 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:09,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-29 00:49:09,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:09,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-29 00:49:10,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:10,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-29 00:49:10,716 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:10,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-29 00:49:10,921 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-29 00:49:11,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:11,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-29 00:49:11,742 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:12,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-29 00:49:12,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:12,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-29 00:49:12,794 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:13,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-29 00:49:13,067 [ scc.repo] DEBUG ## Branches found:
2025-08-29 00:49:13,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-29 00:49:13,067 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:13,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:13,070 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-29 00:49:13,072 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-29 00:49:13,073 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-29 00:49:13,076 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-29 00:49:13,087 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-29 00:49:13,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:13,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-29 00:49:14,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:14,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-29 00:49:14,650 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-29 00:49:14,954 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-29 00:49:14,954 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-29 00:49:14,958 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-29 00:49:15,252 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-29 00:49:15,252 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-29 00:49:15,257 [ scc.git] DEBUG ## Unique users: []
2025-08-29 00:49:15,257 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:15,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:15,259 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-29 00:49:15,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:15,268 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-29 00:49:15,279 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-29 00:49:15,280 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-29 00:49:15,280 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-29 00:49:15,282 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-29 00:49:15,287 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-29 00:49:15,289 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:15,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:15,484 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-29 00:49:15,490 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-29 00:49:15,494 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#519](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-29 00:49:15,496 [ scc.config] DEBUG Found github.token
2025-08-29 00:49:15,496 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-29 00:49:15,496 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-29 00:49:15,501 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:15,504 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-29 00:49:15,514 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-29 00:49:15,518 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-29 00:49:15,518 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-29 00:49:15,736 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:15,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:15,946 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-29 00:49:15,988 [ scc.git] DEBUG Get sha1 of %s
2025-08-29 00:49:15,988 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-29 00:49:15,990 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:49:16,032 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:49:16,036 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda0c6b8e50> has no local changes
2025-08-29 00:49:16,036 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:49:16,043 [ scc.git] DEBUG [detached HEAD 4184c4c] merge master -Dorg -Ssuccess-only
2025-08-29 00:49:16,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:16,043 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-29 00:49:16,122 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-29 00:49:16,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:16,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:16,389 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-29 00:49:16,391 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-29 00:49:16,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:16,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:16,851 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-29 00:49:16,853 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-29 00:49:17,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:17,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:17,390 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-29 00:49:17,392 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-29 00:49:17,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:17,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:17,970 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-29 00:49:18,215 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:18,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:18,428 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-29 00:49:18,429 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-29 00:49:18,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:18,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:18,865 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-29 00:49:18,867 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-29 00:49:19,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:19,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:19,312 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-29 00:49:19,314 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-29 00:49:19,560 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:19,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:19,752 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-29 00:49:19,754 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-29 00:49:19,999 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:20,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:20,194 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-29 00:49:20,196 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-29 00:49:20,441 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:20,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:20,651 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-29 00:49:20,654 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-29 00:49:20,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:21,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:21,115 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-29 00:49:21,117 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-29 00:49:21,362 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:21,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:21,567 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-29 00:49:21,569 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-29 00:49:21,814 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:22,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:22,018 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-29 00:49:22,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:22,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:22,473 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-29 00:49:22,719 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:22,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:22,913 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-29 00:49:22,915 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-29 00:49:23,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:23,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:23,364 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-29 00:49:23,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:23,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:23,809 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-29 00:49:24,055 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:24,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:24,269 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-29 00:49:24,271 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-29 00:49:24,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:24,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:24,720 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-29 00:49:24,722 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-29 00:49:24,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:25,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:25,191 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-29 00:49:25,193 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-29 00:49:25,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:25,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:25,629 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-29 00:49:25,631 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-29 00:49:25,877 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-29 00:49:26,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-29 00:49:26,096 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-29 00:49:26,096 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-29 00:49:26,186 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fda11ff8490> has local changes
2025-08-29 00:49:26,186 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#519 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/519/)'
2025-08-29 00:49:26,199 [ scc.git] DEBUG [detached HEAD 38c851e] merge master -Dorg -Ssuccess-only
2025-08-29 00:49:26,199 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-29 00:49:26,200 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-29 00:49:26,200 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-29 00:49:26,200 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-29 00:49:26,200 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-29 00:49:26,200 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-29 00:49:26,200 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-29 00:49:26,200 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-29 00:49:26,200 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-29 00:49:26,200 [ scc.merge] INFO
2025-08-29 00:49:26,200 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-29 00:49:26,200 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-29 00:49:26,201 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-29 00:49:26,201 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,201 [ scc.merge] INFO
2025-08-29 00:49:26,201 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-29 00:49:26,201 [ scc.merge] INFO
2025-08-29 00:49:26,201 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-29 00:49:26,201 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-29 00:49:26,201 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-29 00:49:26,201 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,201 [ scc.merge] INFO
2025-08-29 00:49:26,201 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-29 00:49:26,201 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-29 00:49:26,202 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-29 00:49:26,202 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-29 00:49:26,202 [ scc.merge] INFO
2025-08-29 00:49:26,202 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-29 00:49:26,202 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-29 00:49:26,202 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-29 00:49:26,202 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,202 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-29 00:49:26,203 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-29 00:49:26,203 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-29 00:49:26,203 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-29 00:49:26,203 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-29 00:49:26,203 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-29 00:49:26,203 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,203 [ scc.merge] INFO
2025-08-29 00:49:26,203 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-29 00:49:26,203 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-29 00:49:26,204 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-29 00:49:26,204 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-29 00:49:26,204 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-29 00:49:26,204 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-29 00:49:26,204 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-29 00:49:26,204 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-29 00:49:26,204 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-29 00:49:26,204 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO
2025-08-29 00:49:26,204 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-29 00:49:26,204 [ scc.merge] INFO Updating deab817..160d894
2025-08-29 00:49:26,205 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-29 00:49:26,205 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-29 00:49:26,205 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-29 00:49:26,205 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-29 00:49:26,205 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-29 00:49:26,205 [ scc.merge] INFO Already up to date.
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-29 00:49:26,205 [ scc.merge] INFO
2025-08-29 00:49:26,205 [ scc.merge] INFO Repository: ome/scripts
2025-08-29 00:49:26,205 [ scc.merge] INFO Excluded PRs:
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-29 00:49:26,205 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-29 00:49:26,205 [ scc.merge] INFO Previously merged:
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-29 00:49:26,205 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-29 00:49:26,206 [ scc.merge] INFO
2025-08-29 00:49:26,206 [ scc.merge] INFO Merged PRs:
2025-08-29 00:49:26,206 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-29 00:49:26,206 [ scc.merge] INFO
2025-08-29 00:49:26,206 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-29 00:49:26,206 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-29 00:49:26,206 [ scc.merge] INFO
2025-08-29 00:49:26,206 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-29 00:49:26,206 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-29 00:49:26,208 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-29 00:49:26,210 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-29 00:49:26,213 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-29 00:49:26,215 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-29 00:49:26,217 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-29 00:49:26,220 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,222 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,222 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-29 00:49:26,222 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-29 00:49:26,224 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-29 00:49:26,226 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-29 00:49:26,229 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-29 00:49:26,231 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-29 00:49:26,233 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-29 00:49:26,236 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-29 00:49:26,238 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,240 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,240 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-29 00:49:26,240 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-29 00:49:26,242 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-29 00:49:26,245 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-29 00:49:26,247 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-29 00:49:26,249 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,252 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,252 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-29 00:49:26,252 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-29 00:49:26,254 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,256 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-29 00:49:26,256 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-29 00:49:26,256 [ scc.git] DEBUG Calling 'git remote'
2025-08-29 00:49:26,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 999d02e] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 04ba79a] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-29 00:50:16,347 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-29 00:50:26,482 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-29 00:50:29,213 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-29 00:50:34,370 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-29 00:51:14,527 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
