13:32:40Started by upstream project "Trigger" build number 2913:32:40originally caused by:
13:32:40 Started by user devspace13:32:40Running as SYSTEM
13:32:40Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
13:32:40The recommended git tool is: NONE
13:32:40No credentials specified
13:32:40 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
13:32:40Fetching changes from the remote Git repository
13:32:40 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
13:32:40Fetching upstream changes from https://github.com/ome/openmicroscopy.git13:32:40 > git --version # timeout=10
13:32:40 > git --version # 'git version 2.47.3'
13:32:40 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:32:41 > git rev-parse origin/develop^{commit} # timeout=10
13:32:41Checking out Revision 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 (origin/develop)
13:32:41 > git config core.sparsecheckout # timeout=10
13:32:41 > git checkout -f 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=30
13:32:42Commit message: "Merge pull request #6441 from sbesson/tmpdir_var_tmp"
13:32:42 > git rev-list --no-walk 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=10
13:32:42Cleaning workspace
13:32:42 > git rev-parse --verify HEAD # timeout=10
13:32:42Resetting working tree
13:32:42 > git reset --hard # timeout=10
13:32:42 > git clean -fdx # timeout=10
13:32:42Copied 1 artifact from "OMERO-python-superbuild-build" build number 1013:32:42[OMERO-push] $ /bin/bash -xe /tmp/jenkins9150016073474711050.sh
13:32:42+ python3.11 -mvenv venv
13:32:44+ source /home/omero/workspace/OMERO-push/venv/bin/activate
13:32:44++ deactivate nondestructive
13:32:44++ '[' -n '' ']'
13:32:44++ '[' -n '' ']'
13:32:44++ hash -r
13:32:44++ '[' -n '' ']'
13:32:44++ unset VIRTUAL_ENV
13:32:44++ unset VIRTUAL_ENV_PROMPT
13:32:44++ '[' '!' nondestructive = nondestructive ']'
13:32:44++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
13:32:44++ export VIRTUAL_ENV
13:32:44++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:32:44++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:32:44++ export PATH
13:32:44++ '[' -n '' ']'
13:32:44++ '[' -z '' ']'
13:32:44++ _OLD_VIRTUAL_PS1=
13:32:44++ PS1='(venv) '
13:32:44++ export PS1
13:32:44++ VIRTUAL_ENV_PROMPT='(venv) '
13:32:44++ export VIRTUAL_ENV_PROMPT
13:32:44++ hash -r
13:32:44+ pip install -U pip
13:32:46Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.3)
13:32:46+ pip install -U scc
13:32:46Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
13:32:46Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.8.1)
13:32:46Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
13:32:46Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
13:32:46Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.17)
13:32:46Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
13:32:46Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
13:32:46Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
13:32:46Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
13:32:46Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.1)
13:32:46Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.5)
13:32:46Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
13:32:46Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.15.0)
13:32:46Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (46.0.3)
13:32:46Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.0.0)
13:32:46Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.23)
13:32:46Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.4)
13:32:46Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.11)
13:32:46Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.11.12)
13:32:46Requirement already satisfied: ruamel.yaml.clib>=0.2.15 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.15)
13:32:46+ test -e src
13:32:46+ cd src
13:32:46++ git config github.user
13:32:46+ user=snoopycrimecop
13:32:46+ scc merge develop --no-ask --reset --shallow -S success-only
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Merging Pull Request(s) based on develop
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
13:32:532026-01-07 13:32:53,304 [ scc.merge] INFO Excluding Pull Request(s) without successful status
13:33:072026-01-07 13:33:07,925 [ scc.merge] INFO Repository: ome/openmicroscopy
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO Excluded PRs:
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO Already up to date.
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO Merged PRs:
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO - PR 6442 snoopycrimecop 'update dependencies'
13:33:072026-01-07 13:33:07,926 [ scc.merge] INFO
13:33:07+ cp etc/omero.properties etc/omero.properties.bak
13:33:07+ rm etc/omero.properties
13:33:07+ touch etc/omero.properties
13:33:07++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
13:33:07+ ne=249
13:33:07++ sed -n 1,249p etc/omero.properties.bak
13:33:07+ line='##
13:33:07## omero.properties
13:33:07## ----------------
13:33:07##
13:33:07## DO NOT EDIT!
13:33:07##
13:33:07##
13:33:07## Any of these properties can be altered by using `omero config`. MODIFYING
13:33:07## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:33:07## at compile time!
13:33:07##
13:33:07## For an overview of these properties, see
13:33:07## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:33:07##
13:33:07## Properties marked with "DEVELOPMENT" should not be used in production.
13:33:0713:33:07# Comma separated list of Ice transports available to clients. The default
13:33:07# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:33:07# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:33:07# will prevent all non-encrypted connections to the OMERO server.
13:33:07#
13:33:07# Additionally, there are two experimental values for using websockets:
13:33:07# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:33:07# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:33:07# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:33:07#
13:33:07# Note: When using websockets behind a web server like nginx, additional
13:33:07# configuration may be needed.
13:33:07omero.client.icetransports=ssl,tcp
13:33:0713:33:07# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:33:07# server
13:33:07omero.ports.prefix=
13:33:0713:33:07# The Glacier2 SSL port number to use
13:33:07omero.ports.ssl=4064
13:33:0713:33:07# The Glacier2 TCP port number to use (unencrypted)
13:33:07omero.ports.tcp=4063
13:33:0713:33:07# The Glacier2 WSS port number to use
13:33:07omero.ports.wss=4066
13:33:0713:33:07# The Glacier2 WS port number to use (unencrypted)
13:33:07omero.ports.ws=4065
13:33:0713:33:07# The IceGrid registry port number to use
13:33:07omero.ports.registry=4061
13:33:0713:33:07#############################################
13:33:07## JVM configuration
13:33:07##
13:33:07## Note: changes to the omero.jvmcfg properties
13:33:07## will *not* be reflected in OMERO.server
13:33:07## since they are defined in OMERO.py.
13:33:07#############################################
13:33:07## (For documentation only)
13:33:07# Memory strategy which will be used by default.
13:33:07# Options include: percent, manual
13:33:07omero.jvmcfg.strategy=percent
13:33:0713:33:07## (For documentation only)
13:33:07# Explicit value for the `-Xmx` argument, e.g.
13:33:07# "1g"
13:33:07omero.jvmcfg.heap_size=
13:33:0713:33:07## (For documentation only)
13:33:07# Explicit value for the MaxPermSize argument
13:33:07# to the JVM, e.g. "500M". Ignored for Java8+
13:33:07omero.jvmcfg.perm_gen=
13:33:0713:33:07## (For documentation only)
13:33:07# Toggles on or off heap dumps on OOMs. Default is "off".
13:33:07# The special value "tmp" will create the heap dumps in
13:33:07# your temp directory.
13:33:07omero.jvmcfg.heap_dump=
13:33:0713:33:07## (For documentation only)
13:33:07# Used only by the percent strategy. An integer between 0
13:33:07# and 100 which is the percent of active memory that will
13:33:07# be used by the service.
13:33:07omero.jvmcfg.percent=
13:33:0713:33:07## (For documentation only)
13:33:07# Contains other parameters which should be passed to the
13:33:07# JVM. The value of "append" is treated as if it were on
13:33:07# the command line so will be separated on whitespace.
13:33:07# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:33:07# results in two new arguments.
13:33:07# Note that when using `config set` from the command line
13:33:07# one may need to give a prior `--` option to prevent a value
13:33:07# starting with `-` from already being parsed as an option,
13:33:07# and values may need quoting to prevent whitespace or other
13:33:07# significant characters from being interpreted prematurely.
13:33:0713:33:07omero.jvmcfg.append=
13:33:0713:33:07## (For documentation only)
13:33:07# Manual override of the total system memory that
13:33:07# OMERO will *think* is present on the local OS (MB).
13:33:07# If unset, an attempt will be made to detect the actual
13:33:07# amount: first by using the Python library `psutil` and
13:33:07# if that is not installed, by running a Java tool. If
13:33:07# neither works, 4.0GB is assumed.
13:33:07omero.jvmcfg.system_memory=
13:33:0713:33:07## (For documentation only)
13:33:07# Suggestion for strategies as to the minimum memory
13:33:07# that they will use for calculating JVM settings (MB).
13:33:07omero.jvmcfg.min_system_memory=3414
13:33:0713:33:07## (For documentation only)
13:33:07# Suggestion for strategies as to the maximum memory
13:33:07# that they will use for calculating JVM settings (MB).
13:33:07omero.jvmcfg.max_system_memory=48000
13:33:0713:33:0713:33:07#############################################
13:33:07## Logging properties
13:33:07##
13:33:07## Note: changes to the default omero.logging values in
13:33:07## this file will *not* be reflected in OMERO.server
13:33:07## since they are defined in OMERO.py
13:33:07#############################################
13:33:0713:33:07## (For documentation only)
13:33:07# Relative server directory where the log files should be stored.
13:33:07omero.logging.directory=var/log/
13:33:0713:33:07## (For documentation only)
13:33:07# Whether the server log files should be rotated at a certain time
13:33:07# interval. If true, log files will be rolled over at midnight.
13:33:07# Otherwise, log files will be rolled over at a predetermined size,
13:33:07# see omero.logging.logsize for more information.
13:33:07omero.logging.timedlog=false
13:33:0713:33:07## (For documentation only)
13:33:07# If omero.logging.timedlog is false or unset, specifies the
13:33:07# maximum size of the server log files in bytes above which a
13:33:07# new log file should be created.
13:33:07omero.logging.logsize=5000000
13:33:0713:33:07## (For documentation only)
13:33:07# If omero.logging.timedlog is false or unset, specifies the
13:33:07# number of old server log files that should be kept. Old log
13:33:07# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:33:07omero.logging.lognum=9
13:33:0713:33:07## (For documentation only)
13:33:07# Specifies the threshold for the Python servers log files. Logging messages
13:33:07# which are less severe than this value will be ignored. For a list of
13:33:07# available values, see https://docs.python.org/3/library/logging.html#levels.
13:33:07omero.logging.level=20
13:33:0713:33:07#############################################
13:33:07## Ice overrides
13:33:07##
13:33:07## Though not used directly by OMERO, a number
13:33:07## of properties prefixed with "Ice.*" will
13:33:07## alter the behavior of the OMERO runtime
13:33:07## by configuring the Ice communicators. For a
13:33:07## full listing see:
13:33:07##
13:33:07## http://doc.zeroc.com/display/Ice/Property+Reference13:33:07## For more information see
13:33:07## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:33:07#############################################
13:33:0713:33:07# Disable IPv6 by setting to 0. Only needed in
13:33:07# certain situations.
13:33:07Ice.IPv6=1
13:33:0713:33:07# Glacier2Template IceSSL defaults and overrides,
13:33:07# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
13:33:07# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:33:07# update the corresponding IceSSL. property.
13:33:07omero.glacier2.IceSSL=
13:33:0713:33:07# Glacier2Template SSL maximum allowed protocol (mac bug)
13:33:07omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:33:07# Glacier2Template SSL allowed cipher suites
13:33:07omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:33:07# Glacier2Template SSL verification requirements
13:33:07omero.glacier2.IceSSL.VerifyPeer=0
13:33:07# Glacier2Template SSL allowed protocols
13:33:07omero.glacier2.IceSSL.Protocols=tls1
13:33:0713:33:07# Override the default set of OMERO services.
13:33:07# For example, to run OMERO.server with Blitz and Tables only
13:33:07# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:33:07# set this to ``master:Blitz-0,Tables-0``.
13:33:07# Also use this to distribute OMERO services across multiple nodes,
13:33:07# for example:
13:33:07# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:33:07# See
13:33:07# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:33:07omero.server.nodedescriptors=
13:33:0713:33:07#############################################
13:33:07## Darwin (OS X) specific defaults for templated configuration files only.
13:33:07## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:33:07## file.
13:33:07## Do not set these properties in ``omero config``, instead set the original
13:33:07## ``xxx.yyy`` property
13:33:07#############################################
13:33:07_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:33:0713:33:07## (For documentation only)
13:33:07# Name of the Python module to use when starting the Tables service
13:33:07omero.tables.module=runTables
13:33:0713:33:07#############################################
13:33:07## Server product name for release artifacts
13:33:07#############################################
13:33:07product.name=OMERO.server
13:33:0713:33:07#############################################
13:33:07### Properties below this marker are ignored by
13:33:07### omero.install.config_parser.PropertyParser
13:33:07### END
13:33:0713:33:07#############################################
13:33:07## Library versions
13:33:07#############################################
13:33:07##
13:33:07versions.findbugs=1.2.1
13:33:07versions.ice36=3.6.5
13:33:07versions.ice36_lib=36
13:33:07## internal
13:33:07versions.omeroshares36=3.6.3
13:33:07versions.omeromock36=3.6.3
13:33:07versions.icedb36=3.6.3
13:33:07versions.ipython=1.2.1
13:33:0713:33:07versions.janino=2.5.10
13:33:0713:33:07versions.reportng=1.1.1
13:33:0713:33:07versions.testng=7.5
13:33:07versions.velocity=1.4
13:33:0713:33:07versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:33:07versions.omero-scripts-url=${versions.omero-pypi}
13:33:0713:33:07###
13:33:07### Appended Values
13:33:07###
13:33:0713:33:07## Internal dependencies'
13:33:07+ echo '##
13:33:07## omero.properties
13:33:07## ----------------
13:33:07##
13:33:07## DO NOT EDIT!
13:33:07##
13:33:07##
13:33:07## Any of these properties can be altered by using `omero config`. MODIFYING
13:33:07## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:33:07## at compile time!
13:33:07##
13:33:07## For an overview of these properties, see
13:33:07## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:33:07##
13:33:07## Properties marked with "DEVELOPMENT" should not be used in production.
13:33:0713:33:07# Comma separated list of Ice transports available to clients. The default
13:33:07# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:33:07# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:33:07# will prevent all non-encrypted connections to the OMERO server.
13:33:07#
13:33:07# Additionally, there are two experimental values for using websockets:
13:33:07# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:33:07# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:33:07# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:33:07#
13:33:07# Note: When using websockets behind a web server like nginx, additional
13:33:07# configuration may be needed.
13:33:07omero.client.icetransports=ssl,tcp
13:33:0713:33:07# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:33:07# server
13:33:07omero.ports.prefix=
13:33:0713:33:07# The Glacier2 SSL port number to use
13:33:07omero.ports.ssl=4064
13:33:0713:33:07# The Glacier2 TCP port number to use (unencrypted)
13:33:07omero.ports.tcp=4063
13:33:0713:33:07# The Glacier2 WSS port number to use
13:33:07omero.ports.wss=4066
13:33:0713:33:07# The Glacier2 WS port number to use (unencrypted)
13:33:07omero.ports.ws=4065
13:33:0713:33:07# The IceGrid registry port number to use
13:33:07omero.ports.registry=4061
13:33:0713:33:07#############################################
13:33:07## JVM configuration
13:33:07##
13:33:07## Note: changes to the omero.jvmcfg properties
13:33:07## will *not* be reflected in OMERO.server
13:33:07## since they are defined in OMERO.py.
13:33:07#############################################
13:33:07## (For documentation only)
13:33:07# Memory strategy which will be used by default.
13:33:07# Options include: percent, manual
13:33:07omero.jvmcfg.strategy=percent
13:33:0713:33:07## (For documentation only)
13:33:07# Explicit value for the `-Xmx` argument, e.g.
13:33:07# "1g"
13:33:07omero.jvmcfg.heap_size=
13:33:0713:33:07## (For documentation only)
13:33:07# Explicit value for the MaxPermSize argument
13:33:07# to the JVM, e.g. "500M". Ignored for Java8+
13:33:07omero.jvmcfg.perm_gen=
13:33:0713:33:07## (For documentation only)
13:33:07# Toggles on or off heap dumps on OOMs. Default is "off".
13:33:07# The special value "tmp" will create the heap dumps in
13:33:07# your temp directory.
13:33:07omero.jvmcfg.heap_dump=
13:33:0713:33:07## (For documentation only)
13:33:07# Used only by the percent strategy. An integer between 0
13:33:07# and 100 which is the percent of active memory that will
13:33:07# be used by the service.
13:33:07omero.jvmcfg.percent=
13:33:0713:33:07## (For documentation only)
13:33:07# Contains other parameters which should be passed to the
13:33:07# JVM. The value of "append" is treated as if it were on
13:33:07# the command line so will be separated on whitespace.
13:33:07# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:33:07# results in two new arguments.
13:33:07# Note that when using `config set` from the command line
13:33:07# one may need to give a prior `--` option to prevent a value
13:33:07# starting with `-` from already being parsed as an option,
13:33:07# and values may need quoting to prevent whitespace or other
13:33:07# significant characters from being interpreted prematurely.
13:33:0713:33:07omero.jvmcfg.append=
13:33:0713:33:07## (For documentation only)
13:33:07# Manual override of the total system memory that
13:33:07# OMERO will *think* is present on the local OS (MB).
13:33:07# If unset, an attempt will be made to detect the actual
13:33:07# amount: first by using the Python library `psutil` and
13:33:07# if that is not installed, by running a Java tool. If
13:33:07# neither works, 4.0GB is assumed.
13:33:07omero.jvmcfg.system_memory=
13:33:0713:33:07## (For documentation only)
13:33:07# Suggestion for strategies as to the minimum memory
13:33:07# that they will use for calculating JVM settings (MB).
13:33:07omero.jvmcfg.min_system_memory=3414
13:33:0713:33:07## (For documentation only)
13:33:07# Suggestion for strategies as to the maximum memory
13:33:07# that they will use for calculating JVM settings (MB).
13:33:07omero.jvmcfg.max_system_memory=48000
13:33:0713:33:0713:33:07#############################################
13:33:07## Logging properties
13:33:07##
13:33:07## Note: changes to the default omero.logging values in
13:33:07## this file will *not* be reflected in OMERO.server
13:33:07## since they are defined in OMERO.py
13:33:07#############################################
13:33:0713:33:07## (For documentation only)
13:33:07# Relative server directory where the log files should be stored.
13:33:07omero.logging.directory=var/log/
13:33:0713:33:07## (For documentation only)
13:33:07# Whether the server log files should be rotated at a certain time
13:33:07# interval. If true, log files will be rolled over at midnight.
13:33:07# Otherwise, log files will be rolled over at a predetermined size,
13:33:07# see omero.logging.logsize for more information.
13:33:07omero.logging.timedlog=false
13:33:0713:33:07## (For documentation only)
13:33:07# If omero.logging.timedlog is false or unset, specifies the
13:33:07# maximum size of the server log files in bytes above which a
13:33:07# new log file should be created.
13:33:07omero.logging.logsize=5000000
13:33:0713:33:07## (For documentation only)
13:33:07# If omero.logging.timedlog is false or unset, specifies the
13:33:07# number of old server log files that should be kept. Old log
13:33:07# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:33:07omero.logging.lognum=9
13:33:0713:33:07## (For documentation only)
13:33:07# Specifies the threshold for the Python servers log files. Logging messages
13:33:07# which are less severe than this value will be ignored. For a list of
13:33:07# available values, see https://docs.python.org/3/library/logging.html#levels.
13:33:07omero.logging.level=20
13:33:0713:33:07#############################################
13:33:07## Ice overrides
13:33:07##
13:33:07## Though not used directly by OMERO, a number
13:33:07## of properties prefixed with "Ice.*" will
13:33:07## alter the behavior of the OMERO runtime
13:33:07## by configuring the Ice communicators. For a
13:33:07## full listing see:
13:33:07##
13:33:07## http://doc.zeroc.com/display/Ice/Property+Reference13:33:07## For more information see
13:33:07## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:33:07#############################################
13:33:0713:33:07# Disable IPv6 by setting to 0. Only needed in
13:33:07# certain situations.
13:33:07Ice.IPv6=1
13:33:0713:33:07# Glacier2Template IceSSL defaults and overrides,
13:33:07# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
13:33:07# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:33:07# update the corresponding IceSSL. property.
13:33:07omero.glacier2.IceSSL=
13:33:0713:33:07# Glacier2Template SSL maximum allowed protocol (mac bug)
13:33:07omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:33:07# Glacier2Template SSL allowed cipher suites
13:33:07omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:33:07# Glacier2Template SSL verification requirements
13:33:07omero.glacier2.IceSSL.VerifyPeer=0
13:33:07# Glacier2Template SSL allowed protocols
13:33:07omero.glacier2.IceSSL.Protocols=tls1
13:33:0713:33:07# Override the default set of OMERO services.
13:33:07# For example, to run OMERO.server with Blitz and Tables only
13:33:07# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:33:07# set this to ``master:Blitz-0,Tables-0``.
13:33:07# Also use this to distribute OMERO services across multiple nodes,
13:33:07# for example:
13:33:07# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:33:07# See
13:33:07# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:33:07omero.server.nodedescriptors=
13:33:0713:33:07#############################################
13:33:07## Darwin (OS X) specific defaults for templated configuration files only.
13:33:07## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:33:07## file.
13:33:07## Do not set these properties in ``omero config``, instead set the original
13:33:07## ``xxx.yyy`` property
13:33:07#############################################
13:33:07_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:33:0713:33:07## (For documentation only)
13:33:07# Name of the Python module to use when starting the Tables service
13:33:07omero.tables.module=runTables
13:33:0713:33:07#############################################
13:33:07## Server product name for release artifacts
13:33:07#############################################
13:33:07product.name=OMERO.server
13:33:0713:33:07#############################################
13:33:07### Properties below this marker are ignored by
13:33:07### omero.install.config_parser.PropertyParser
13:33:07### END
13:33:0713:33:07#############################################
13:33:07## Library versions
13:33:07#############################################
13:33:07##
13:33:07versions.findbugs=1.2.1
13:33:07versions.ice36=3.6.5
13:33:07versions.ice36_lib=36
13:33:07## internal
13:33:07versions.omeroshares36=3.6.3
13:33:07versions.omeromock36=3.6.3
13:33:07versions.icedb36=3.6.3
13:33:07versions.ipython=1.2.1
13:33:0713:33:07versions.janino=2.5.10
13:33:0713:33:07versions.reportng=1.1.1
13:33:0713:33:07versions.testng=7.5
13:33:07versions.velocity=1.4
13:33:0713:33:07versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:33:07versions.omero-scripts-url=${versions.omero-pypi}
13:33:0713:33:07###
13:33:07### Appended Values
13:33:07###
13:33:0713:33:07## Internal dependencies'
13:33:07+ echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/13:33:07+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive13:33:07+ echo versions.scripts-prefix=
13:33:07+ echo versions.scripts=merge_ci
13:33:07+ cat /home/omero/workspace/OMERO-push/version.properties
13:33:07+ git commit -a -m 'Add version.properties to etc/omero.properties'
13:33:08[detached HEAD 43bbcc5d9d] Add version.properties to etc/omero.properties
13:33:08 1 file changed, 46 insertions(+), 7 deletions(-)
13:33:08+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
13:33:09To github.com:snoopycrimecop/openmicroscopy.git
13:33:09 + 8eaf18f124...43bbcc5d9d HEAD -> merge_ci (forced update)
13:33:09Finished: SUCCESS
