11:39:44Started by upstream project "Trigger" build number 1811:39:44originally caused by:
11:39:44 Started by user devspace11:39:44Running as SYSTEM
11:39:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
11:39:44The recommended git tool is: NONE
11:39:44No credentials specified
11:39:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
11:39:44Fetching changes from the remote Git repository
11:39:44 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
11:39:44Fetching upstream changes from https://github.com/ome/openmicroscopy.git11:39:44 > git --version # timeout=10
11:39:44 > git --version # 'git version 2.52.0'
11:39:44 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:39:49 > git rev-parse origin/develop^{commit} # timeout=10
11:39:49Checking out Revision 459295bae8a1813dc9fb30a674107a799113dc49 (origin/develop)
11:39:49 > git config core.sparsecheckout # timeout=10
11:39:49 > git checkout -f 459295bae8a1813dc9fb30a674107a799113dc49 # timeout=30
11:40:05Commit message: "Merge pull request #6456 from knabar/update-tree-tag-child-count"
11:40:05 > git rev-list --no-walk 459295bae8a1813dc9fb30a674107a799113dc49 # timeout=10
11:40:05Cleaning workspace
11:40:05 > git rev-parse --verify HEAD # timeout=10
11:40:06Resetting working tree
11:40:06 > git reset --hard # timeout=10
11:40:06 > git clean -fdx # timeout=10
11:40:07Copied 1 artifact from "OMERO-python-superbuild-build" build number 1011:40:07[OMERO-push] $ /bin/bash -xe /tmp/jenkins17214066672881387944.sh
11:40:07+ python3.11 -mvenv venv
11:40:09+ source /home/omero/workspace/OMERO-push/venv/bin/activate
11:40:09++ deactivate nondestructive
11:40:09++ '[' -n '' ']'
11:40:09++ '[' -n '' ']'
11:40:09++ hash -r
11:40:09++ '[' -n '' ']'
11:40:09++ unset VIRTUAL_ENV
11:40:09++ unset VIRTUAL_ENV_PROMPT
11:40:09++ '[' '!' nondestructive = nondestructive ']'
11:40:09++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
11:40:09++ export VIRTUAL_ENV
11:40:09++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:40:09++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:40:09++ export PATH
11:40:09++ '[' -n '' ']'
11:40:09++ '[' -z '' ']'
11:40:09++ _OLD_VIRTUAL_PS1=
11:40:09++ PS1='(venv) '
11:40:09++ export PS1
11:40:09++ VIRTUAL_ENV_PROMPT='(venv) '
11:40:09++ export VIRTUAL_ENV_PROMPT
11:40:09++ hash -r
11:40:09+ pip install -U pip
11:40:13Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
11:40:14+ pip install -U scc
11:40:15Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
11:40:15Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
11:40:15Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
11:40:15Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
11:40:15Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
11:40:15Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
11:40:15Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
11:40:15Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
11:40:15Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
11:40:15Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
11:40:15Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
11:40:15Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
11:40:15Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
11:40:15Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
11:40:15Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
11:40:15Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
11:40:15Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
11:40:15Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
11:40:15Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
11:40:15+ test -e src
11:40:15+ cd src
11:40:15++ git config github.user
11:40:15+ user=snoopycrimecop
11:40:15+ scc merge develop --no-ask --reset --shallow -S success-only
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Merging Pull Request(s) based on develop
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
11:40:242026-07-16 11:40:24,966 [ scc.merge] INFO Excluding Pull Request(s) without successful status
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO Repository: ome/openmicroscopy
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO Excluded PRs:
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO Already up to date.
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO Merged PRs:
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
11:41:002026-07-16 11:41:00,909 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
11:41:002026-07-16 11:41:00,910 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
11:41:002026-07-16 11:41:00,910 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
11:41:002026-07-16 11:41:00,910 [ scc.merge] INFO - PR 6464 pwalczysko 'Fix test_pyramids.py little and big_endian'
11:41:002026-07-16 11:41:00,910 [ scc.merge] INFO - PR 6465 pwalczysko 'Fix also the test_remove__pre_fs_pyramids'
11:41:002026-07-16 11:41:00,910 [ scc.merge] INFO
11:41:00+ cp etc/omero.properties etc/omero.properties.bak
11:41:00+ rm etc/omero.properties
11:41:00+ touch etc/omero.properties
11:41:00++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
11:41:01+ ne=249
11:41:01++ sed -n 1,249p etc/omero.properties.bak
11:41:01+ line='##
11:41:01## omero.properties
11:41:01## ----------------
11:41:01##
11:41:01## DO NOT EDIT!
11:41:01##
11:41:01##
11:41:01## Any of these properties can be altered by using `omero config`. MODIFYING
11:41:01## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:41:01## at compile time!
11:41:01##
11:41:01## For an overview of these properties, see
11:41:01## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:41:01##
11:41:01## Properties marked with "DEVELOPMENT" should not be used in production.
11:41:0111:41:01# Comma separated list of Ice transports available to clients. The default
11:41:01# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:41:01# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:41:01# will prevent all non-encrypted connections to the OMERO server.
11:41:01#
11:41:01# Additionally, there are two experimental values for using websockets:
11:41:01# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:41:01# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:41:01# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:41:01#
11:41:01# Note: When using websockets behind a web server like nginx, additional
11:41:01# configuration may be needed.
11:41:01omero.client.icetransports=ssl,tcp
11:41:0111:41:01# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:41:01# server
11:41:01omero.ports.prefix=
11:41:0111:41:01# The Glacier2 SSL port number to use
11:41:01omero.ports.ssl=4064
11:41:0111:41:01# The Glacier2 TCP port number to use (unencrypted)
11:41:01omero.ports.tcp=4063
11:41:0111:41:01# The Glacier2 WSS port number to use
11:41:01omero.ports.wss=4066
11:41:0111:41:01# The Glacier2 WS port number to use (unencrypted)
11:41:01omero.ports.ws=4065
11:41:0111:41:01# The IceGrid registry port number to use
11:41:01omero.ports.registry=4061
11:41:0111:41:01#############################################
11:41:01## JVM configuration
11:41:01##
11:41:01## Note: changes to the omero.jvmcfg properties
11:41:01## will *not* be reflected in OMERO.server
11:41:01## since they are defined in OMERO.py.
11:41:01#############################################
11:41:01## (For documentation only)
11:41:01# Memory strategy which will be used by default.
11:41:01# Options include: percent, manual
11:41:01omero.jvmcfg.strategy=percent
11:41:0111:41:01## (For documentation only)
11:41:01# Explicit value for the `-Xmx` argument, e.g.
11:41:01# "1g"
11:41:01omero.jvmcfg.heap_size=
11:41:0111:41:01## (For documentation only)
11:41:01# Explicit value for the MaxPermSize argument
11:41:01# to the JVM, e.g. "500M". Ignored for Java8+
11:41:01omero.jvmcfg.perm_gen=
11:41:0111:41:01## (For documentation only)
11:41:01# Toggles on or off heap dumps on OOMs. Default is "off".
11:41:01# The special value "tmp" will create the heap dumps in
11:41:01# your temp directory.
11:41:01omero.jvmcfg.heap_dump=
11:41:0111:41:01## (For documentation only)
11:41:01# Used only by the percent strategy. An integer between 0
11:41:01# and 100 which is the percent of active memory that will
11:41:01# be used by the service.
11:41:01omero.jvmcfg.percent=
11:41:0111:41:01## (For documentation only)
11:41:01# Contains other parameters which should be passed to the
11:41:01# JVM. The value of "append" is treated as if it were on
11:41:01# the command line so will be separated on whitespace.
11:41:01# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:41:01# results in two new arguments.
11:41:01# Note that when using `config set` from the command line
11:41:01# one may need to give a prior `--` option to prevent a value
11:41:01# starting with `-` from already being parsed as an option,
11:41:01# and values may need quoting to prevent whitespace or other
11:41:01# significant characters from being interpreted prematurely.
11:41:0111:41:01omero.jvmcfg.append=
11:41:0111:41:01## (For documentation only)
11:41:01# Manual override of the total system memory that
11:41:01# OMERO will *think* is present on the local OS (MB).
11:41:01# If unset, an attempt will be made to detect the actual
11:41:01# amount: first by using the Python library `psutil` and
11:41:01# if that is not installed, by running a Java tool. If
11:41:01# neither works, 4.0GB is assumed.
11:41:01omero.jvmcfg.system_memory=
11:41:0111:41:01## (For documentation only)
11:41:01# Suggestion for strategies as to the minimum memory
11:41:01# that they will use for calculating JVM settings (MB).
11:41:01omero.jvmcfg.min_system_memory=3414
11:41:0111:41:01## (For documentation only)
11:41:01# Suggestion for strategies as to the maximum memory
11:41:01# that they will use for calculating JVM settings (MB).
11:41:01omero.jvmcfg.max_system_memory=48000
11:41:0111:41:0111:41:01#############################################
11:41:01## Logging properties
11:41:01##
11:41:01## Note: changes to the default omero.logging values in
11:41:01## this file will *not* be reflected in OMERO.server
11:41:01## since they are defined in OMERO.py
11:41:01#############################################
11:41:0111:41:01## (For documentation only)
11:41:01# Relative server directory where the log files should be stored.
11:41:01omero.logging.directory=var/log/
11:41:0111:41:01## (For documentation only)
11:41:01# Whether the server log files should be rotated at a certain time
11:41:01# interval. If true, log files will be rolled over at midnight.
11:41:01# Otherwise, log files will be rolled over at a predetermined size,
11:41:01# see omero.logging.logsize for more information.
11:41:01omero.logging.timedlog=false
11:41:0111:41:01## (For documentation only)
11:41:01# If omero.logging.timedlog is false or unset, specifies the
11:41:01# maximum size of the server log files in bytes above which a
11:41:01# new log file should be created.
11:41:01omero.logging.logsize=5000000
11:41:0111:41:01## (For documentation only)
11:41:01# If omero.logging.timedlog is false or unset, specifies the
11:41:01# number of old server log files that should be kept. Old log
11:41:01# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:41:01omero.logging.lognum=9
11:41:0111:41:01## (For documentation only)
11:41:01# Specifies the threshold for the Python servers log files. Logging messages
11:41:01# which are less severe than this value will be ignored. For a list of
11:41:01# available values, see https://docs.python.org/3/library/logging.html#levels.
11:41:01omero.logging.level=20
11:41:0111:41:01#############################################
11:41:01## Ice overrides
11:41:01##
11:41:01## Though not used directly by OMERO, a number
11:41:01## of properties prefixed with "Ice.*" will
11:41:01## alter the behavior of the OMERO runtime
11:41:01## by configuring the Ice communicators. For a
11:41:01## full listing see:
11:41:01##
11:41:01## http://doc.zeroc.com/display/Ice/Property+Reference11:41:01## For more information see
11:41:01## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:41:01#############################################
11:41:0111:41:01# Disable IPv6 by setting to 0. Only needed in
11:41:01# certain situations.
11:41:01Ice.IPv6=1
11:41:0111:41:01# Glacier2Template IceSSL defaults and overrides,
11:41:01# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:41:01# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:41:01# update the corresponding IceSSL. property.
11:41:01omero.glacier2.IceSSL=
11:41:0111:41:01# Glacier2Template SSL maximum allowed protocol (mac bug)
11:41:01omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:41:01# Glacier2Template SSL allowed cipher suites
11:41:01omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:41:01# Glacier2Template SSL verification requirements
11:41:01omero.glacier2.IceSSL.VerifyPeer=0
11:41:01# Glacier2Template SSL allowed protocols
11:41:01omero.glacier2.IceSSL.Protocols=tls1
11:41:0111:41:01# Override the default set of OMERO services.
11:41:01# For example, to run OMERO.server with Blitz and Tables only
11:41:01# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:41:01# set this to ``master:Blitz-0,Tables-0``.
11:41:01# Also use this to distribute OMERO services across multiple nodes,
11:41:01# for example:
11:41:01# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:41:01# See
11:41:01# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:41:01omero.server.nodedescriptors=
11:41:0111:41:01#############################################
11:41:01## Darwin (OS X) specific defaults for templated configuration files only.
11:41:01## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:41:01## file.
11:41:01## Do not set these properties in ``omero config``, instead set the original
11:41:01## ``xxx.yyy`` property
11:41:01#############################################
11:41:01_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:41:0111:41:01## (For documentation only)
11:41:01# Name of the Python module to use when starting the Tables service
11:41:01omero.tables.module=runTables
11:41:0111:41:01#############################################
11:41:01## Server product name for release artifacts
11:41:01#############################################
11:41:01product.name=OMERO.server
11:41:0111:41:01#############################################
11:41:01### Properties below this marker are ignored by
11:41:01### omero.install.config_parser.PropertyParser
11:41:01### END
11:41:0111:41:01#############################################
11:41:01## Library versions
11:41:01#############################################
11:41:01##
11:41:01versions.findbugs=1.2.1
11:41:01versions.ice36=3.6.5
11:41:01versions.ice36_lib=36
11:41:01## internal
11:41:01versions.omeroshares36=3.6.3
11:41:01versions.omeromock36=3.6.3
11:41:01versions.icedb36=3.6.3
11:41:01versions.ipython=1.2.1
11:41:0111:41:01versions.janino=2.5.10
11:41:0111:41:01versions.reportng=1.1.1
11:41:0111:41:01versions.testng=7.5
11:41:01versions.velocity=1.4
11:41:0111:41:01versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:41:01versions.omero-scripts-url=${versions.omero-pypi}
11:41:0111:41:01###
11:41:01### Appended Values
11:41:01###
11:41:0111:41:01## Internal dependencies'
11:41:01+ echo '##
11:41:01## omero.properties
11:41:01## ----------------
11:41:01##
11:41:01## DO NOT EDIT!
11:41:01##
11:41:01##
11:41:01## Any of these properties can be altered by using `omero config`. MODIFYING
11:41:01## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:41:01## at compile time!
11:41:01##
11:41:01## For an overview of these properties, see
11:41:01## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:41:01##
11:41:01## Properties marked with "DEVELOPMENT" should not be used in production.
11:41:0111:41:01# Comma separated list of Ice transports available to clients. The default
11:41:01# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:41:01# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:41:01# will prevent all non-encrypted connections to the OMERO server.
11:41:01#
11:41:01# Additionally, there are two experimental values for using websockets:
11:41:01# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:41:01# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:41:01# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:41:01#
11:41:01# Note: When using websockets behind a web server like nginx, additional
11:41:01# configuration may be needed.
11:41:01omero.client.icetransports=ssl,tcp
11:41:0111:41:01# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:41:01# server
11:41:01omero.ports.prefix=
11:41:0111:41:01# The Glacier2 SSL port number to use
11:41:01omero.ports.ssl=4064
11:41:0111:41:01# The Glacier2 TCP port number to use (unencrypted)
11:41:01omero.ports.tcp=4063
11:41:0111:41:01# The Glacier2 WSS port number to use
11:41:01omero.ports.wss=4066
11:41:0111:41:01# The Glacier2 WS port number to use (unencrypted)
11:41:01omero.ports.ws=4065
11:41:0111:41:01# The IceGrid registry port number to use
11:41:01omero.ports.registry=4061
11:41:0111:41:01#############################################
11:41:01## JVM configuration
11:41:01##
11:41:01## Note: changes to the omero.jvmcfg properties
11:41:01## will *not* be reflected in OMERO.server
11:41:01## since they are defined in OMERO.py.
11:41:01#############################################
11:41:01## (For documentation only)
11:41:01# Memory strategy which will be used by default.
11:41:01# Options include: percent, manual
11:41:01omero.jvmcfg.strategy=percent
11:41:0111:41:01## (For documentation only)
11:41:01# Explicit value for the `-Xmx` argument, e.g.
11:41:01# "1g"
11:41:01omero.jvmcfg.heap_size=
11:41:0111:41:01## (For documentation only)
11:41:01# Explicit value for the MaxPermSize argument
11:41:01# to the JVM, e.g. "500M". Ignored for Java8+
11:41:01omero.jvmcfg.perm_gen=
11:41:0111:41:01## (For documentation only)
11:41:01# Toggles on or off heap dumps on OOMs. Default is "off".
11:41:01# The special value "tmp" will create the heap dumps in
11:41:01# your temp directory.
11:41:01omero.jvmcfg.heap_dump=
11:41:0111:41:01## (For documentation only)
11:41:01# Used only by the percent strategy. An integer between 0
11:41:01# and 100 which is the percent of active memory that will
11:41:01# be used by the service.
11:41:01omero.jvmcfg.percent=
11:41:0111:41:01## (For documentation only)
11:41:01# Contains other parameters which should be passed to the
11:41:01# JVM. The value of "append" is treated as if it were on
11:41:01# the command line so will be separated on whitespace.
11:41:01# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:41:01# results in two new arguments.
11:41:01# Note that when using `config set` from the command line
11:41:01# one may need to give a prior `--` option to prevent a value
11:41:01# starting with `-` from already being parsed as an option,
11:41:01# and values may need quoting to prevent whitespace or other
11:41:01# significant characters from being interpreted prematurely.
11:41:0111:41:01omero.jvmcfg.append=
11:41:0111:41:01## (For documentation only)
11:41:01# Manual override of the total system memory that
11:41:01# OMERO will *think* is present on the local OS (MB).
11:41:01# If unset, an attempt will be made to detect the actual
11:41:01# amount: first by using the Python library `psutil` and
11:41:01# if that is not installed, by running a Java tool. If
11:41:01# neither works, 4.0GB is assumed.
11:41:01omero.jvmcfg.system_memory=
11:41:0111:41:01## (For documentation only)
11:41:01# Suggestion for strategies as to the minimum memory
11:41:01# that they will use for calculating JVM settings (MB).
11:41:01omero.jvmcfg.min_system_memory=3414
11:41:0111:41:01## (For documentation only)
11:41:01# Suggestion for strategies as to the maximum memory
11:41:01# that they will use for calculating JVM settings (MB).
11:41:01omero.jvmcfg.max_system_memory=48000
11:41:0111:41:0111:41:01#############################################
11:41:01## Logging properties
11:41:01##
11:41:01## Note: changes to the default omero.logging values in
11:41:01## this file will *not* be reflected in OMERO.server
11:41:01## since they are defined in OMERO.py
11:41:01#############################################
11:41:0111:41:01## (For documentation only)
11:41:01# Relative server directory where the log files should be stored.
11:41:01omero.logging.directory=var/log/
11:41:0111:41:01## (For documentation only)
11:41:01# Whether the server log files should be rotated at a certain time
11:41:01# interval. If true, log files will be rolled over at midnight.
11:41:01# Otherwise, log files will be rolled over at a predetermined size,
11:41:01# see omero.logging.logsize for more information.
11:41:01omero.logging.timedlog=false
11:41:0111:41:01## (For documentation only)
11:41:01# If omero.logging.timedlog is false or unset, specifies the
11:41:01# maximum size of the server log files in bytes above which a
11:41:01# new log file should be created.
11:41:01omero.logging.logsize=5000000
11:41:0111:41:01## (For documentation only)
11:41:01# If omero.logging.timedlog is false or unset, specifies the
11:41:01# number of old server log files that should be kept. Old log
11:41:01# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:41:01omero.logging.lognum=9
11:41:0111:41:01## (For documentation only)
11:41:01# Specifies the threshold for the Python servers log files. Logging messages
11:41:01# which are less severe than this value will be ignored. For a list of
11:41:01# available values, see https://docs.python.org/3/library/logging.html#levels.
11:41:01omero.logging.level=20
11:41:0111:41:01#############################################
11:41:01## Ice overrides
11:41:01##
11:41:01## Though not used directly by OMERO, a number
11:41:01## of properties prefixed with "Ice.*" will
11:41:01## alter the behavior of the OMERO runtime
11:41:01## by configuring the Ice communicators. For a
11:41:01## full listing see:
11:41:01##
11:41:01## http://doc.zeroc.com/display/Ice/Property+Reference11:41:01## For more information see
11:41:01## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:41:01#############################################
11:41:0111:41:01# Disable IPv6 by setting to 0. Only needed in
11:41:01# certain situations.
11:41:01Ice.IPv6=1
11:41:0111:41:01# Glacier2Template IceSSL defaults and overrides,
11:41:01# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:41:01# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:41:01# update the corresponding IceSSL. property.
11:41:01omero.glacier2.IceSSL=
11:41:0111:41:01# Glacier2Template SSL maximum allowed protocol (mac bug)
11:41:01omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:41:01# Glacier2Template SSL allowed cipher suites
11:41:01omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:41:01# Glacier2Template SSL verification requirements
11:41:01omero.glacier2.IceSSL.VerifyPeer=0
11:41:01# Glacier2Template SSL allowed protocols
11:41:01omero.glacier2.IceSSL.Protocols=tls1
11:41:0111:41:01# Override the default set of OMERO services.
11:41:01# For example, to run OMERO.server with Blitz and Tables only
11:41:01# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:41:01# set this to ``master:Blitz-0,Tables-0``.
11:41:01# Also use this to distribute OMERO services across multiple nodes,
11:41:01# for example:
11:41:01# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:41:01# See
11:41:01# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:41:01omero.server.nodedescriptors=
11:41:0111:41:01#############################################
11:41:01## Darwin (OS X) specific defaults for templated configuration files only.
11:41:01## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:41:01## file.
11:41:01## Do not set these properties in ``omero config``, instead set the original
11:41:01## ``xxx.yyy`` property
11:41:01#############################################
11:41:01_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:41:0111:41:01## (For documentation only)
11:41:01# Name of the Python module to use when starting the Tables service
11:41:01omero.tables.module=runTables
11:41:0111:41:01#############################################
11:41:01## Server product name for release artifacts
11:41:01#############################################
11:41:01product.name=OMERO.server
11:41:0111:41:01#############################################
11:41:01### Properties below this marker are ignored by
11:41:01### omero.install.config_parser.PropertyParser
11:41:01### END
11:41:0111:41:01#############################################
11:41:01## Library versions
11:41:01#############################################
11:41:01##
11:41:01versions.findbugs=1.2.1
11:41:01versions.ice36=3.6.5
11:41:01versions.ice36_lib=36
11:41:01## internal
11:41:01versions.omeroshares36=3.6.3
11:41:01versions.omeromock36=3.6.3
11:41:01versions.icedb36=3.6.3
11:41:01versions.ipython=1.2.1
11:41:0111:41:01versions.janino=2.5.10
11:41:0111:41:01versions.reportng=1.1.1
11:41:0111:41:01versions.testng=7.5
11:41:01versions.velocity=1.4
11:41:0111:41:01versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:41:01versions.omero-scripts-url=${versions.omero-pypi}
11:41:0111:41:01###
11:41:01### Appended Values
11:41:01###
11:41:0111:41:01## Internal dependencies'
11:41:01+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/11:41:01+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive11:41:01+ echo versions.scripts-prefix=
11:41:01+ echo versions.scripts=merge_ci
11:41:01+ cat /home/omero/workspace/OMERO-push/version.properties
11:41:01+ git commit -a -m 'Add version.properties to etc/omero.properties'
11:41:01[detached HEAD 8a224c870a] Add version.properties to etc/omero.properties
11:41:01 1 file changed, 46 insertions(+), 6 deletions(-)
11:41:01+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
11:41:04To github.com:snoopycrimecop/openmicroscopy.git
11:41:04 + 953535fe6b...8a224c870a HEAD -> merge_ci (forced update)
11:41:04Finished: SUCCESS
