01:18:54Started by upstream project "Trigger" build number 2001:18:54originally caused by:
01:18:54 Started by timer
01:18:54Running as SYSTEM
01:18:54Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
01:18:54The recommended git tool is: NONE
01:18:54No credentials specified
01:18:54 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
01:18:54Fetching changes from the remote Git repository
01:18:54 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
01:18:54Fetching upstream changes from https://github.com/ome/openmicroscopy.git01:18:54 > git --version # timeout=10
01:18:54 > git --version # 'git version 2.52.0'
01:18:54 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:19:00 > git rev-parse origin/develop^{commit} # timeout=10
01:19:00Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
01:19:00 > git config core.sparsecheckout # timeout=10
01:19:00 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
01:19:04Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
01:19:04 > git rev-list --no-walk 459295bae8a1813dc9fb30a674107a799113dc49 # timeout=10
01:19:04Cleaning workspace
01:19:04 > git rev-parse --verify HEAD # timeout=10
01:19:04Resetting working tree
01:19:04 > git reset --hard # timeout=10
01:19:04 > git clean -fdx # timeout=10
01:19:04Copied 1 artifact from "OMERO-python-superbuild-build" build number 1101:19:04[OMERO-push] $ /bin/bash -xe /tmp/jenkins417009317041202451.sh
01:19:04+ python3.11 -mvenv venv
01:19:07+ source /home/omero/workspace/OMERO-push/venv/bin/activate
01:19:07++ deactivate nondestructive
01:19:07++ '[' -n '' ']'
01:19:07++ '[' -n '' ']'
01:19:07++ hash -r
01:19:07++ '[' -n '' ']'
01:19:07++ unset VIRTUAL_ENV
01:19:07++ unset VIRTUAL_ENV_PROMPT
01:19:07++ '[' '!' nondestructive = nondestructive ']'
01:19:07++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
01:19:07++ export VIRTUAL_ENV
01:19:07++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:07++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:07++ export PATH
01:19:07++ '[' -n '' ']'
01:19:07++ '[' -z '' ']'
01:19:07++ _OLD_VIRTUAL_PS1=
01:19:07++ PS1='(venv) '
01:19:07++ export PS1
01:19:07++ VIRTUAL_ENV_PROMPT='(venv) '
01:19:07++ export VIRTUAL_ENV_PROMPT
01:19:07++ hash -r
01:19:07+ pip install -U pip
01:19:10Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
01:19:11+ pip install -U scc
01:19:12Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
01:19:12Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
01:19:12Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
01:19:12Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
01:19:12Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
01:19:12Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
01:19:12Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
01:19:12Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
01:19:12Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
01:19:12Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
01:19:12Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
01:19:12Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
01:19:12Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
01:19:12Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
01:19:12Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
01:19:12Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
01:19:12Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
01:19:12Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
01:19:12Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
01:19:12+ test -e src
01:19:12+ cd src
01:19:12++ git config github.user
01:19:12+ user=snoopycrimecop
01:19:12+ scc merge develop --no-ask --reset --shallow -S success-only
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Merging Pull Request(s) based on develop
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
01:19:202026-07-18 01:19:20,349 [ scc.merge] INFO Excluding Pull Request(s) without successful status
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO Repository: ome/openmicroscopy
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO Excluded PRs:
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (label: exclude)
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
01:19:572026-07-18 01:19:57,386 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO Already up to date.
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO Merged PRs:
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6465 pwalczysko 'Fix also the test_remove__pre_fs_pyramids'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6466 pwalczysko 'Fix test_remove_pyramids_check_thumbs NFS'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO - PR 6467 pwalczysko 'Test thumbs'
01:19:572026-07-18 01:19:57,387 [ scc.merge] INFO
01:19:57+ cp etc/omero.properties etc/omero.properties.bak
01:19:57+ rm etc/omero.properties
01:19:57+ touch etc/omero.properties
01:19:57++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
01:19:57+ ne=249
01:19:57++ sed -n 1,249p etc/omero.properties.bak
01:19:57+ line='##
01:19:57## omero.properties
01:19:57## ----------------
01:19:57##
01:19:57## DO NOT EDIT!
01:19:57##
01:19:57##
01:19:57## Any of these properties can be altered by using `omero config`. MODIFYING
01:19:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:19:57## at compile time!
01:19:57##
01:19:57## For an overview of these properties, see
01:19:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:19:57##
01:19:57## Properties marked with "DEVELOPMENT" should not be used in production.
01:19:5701:19:57# Comma separated list of Ice transports available to clients. The default
01:19:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:19:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:19:57# will prevent all non-encrypted connections to the OMERO server.
01:19:57#
01:19:57# Additionally, there are two experimental values for using websockets:
01:19:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:19:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:19:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:19:57#
01:19:57# Note: When using websockets behind a web server like nginx, additional
01:19:57# configuration may be needed.
01:19:57omero.client.icetransports=ssl,tcp
01:19:5701:19:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:19:57# server
01:19:57omero.ports.prefix=
01:19:5701:19:57# The Glacier2 SSL port number to use
01:19:57omero.ports.ssl=4064
01:19:5701:19:57# The Glacier2 TCP port number to use (unencrypted)
01:19:57omero.ports.tcp=4063
01:19:5701:19:57# The Glacier2 WSS port number to use
01:19:57omero.ports.wss=4066
01:19:5701:19:57# The Glacier2 WS port number to use (unencrypted)
01:19:57omero.ports.ws=4065
01:19:5701:19:57# The IceGrid registry port number to use
01:19:57omero.ports.registry=4061
01:19:5701:19:57#############################################
01:19:57## JVM configuration
01:19:57##
01:19:57## Note: changes to the omero.jvmcfg properties
01:19:57## will *not* be reflected in OMERO.server
01:19:57## since they are defined in OMERO.py.
01:19:57#############################################
01:19:57## (For documentation only)
01:19:57# Memory strategy which will be used by default.
01:19:57# Options include: percent, manual
01:19:57omero.jvmcfg.strategy=percent
01:19:5701:19:57## (For documentation only)
01:19:57# Explicit value for the `-Xmx` argument, e.g.
01:19:57# "1g"
01:19:57omero.jvmcfg.heap_size=
01:19:5701:19:57## (For documentation only)
01:19:57# Explicit value for the MaxPermSize argument
01:19:57# to the JVM, e.g. "500M". Ignored for Java8+
01:19:57omero.jvmcfg.perm_gen=
01:19:5701:19:57## (For documentation only)
01:19:57# Toggles on or off heap dumps on OOMs. Default is "off".
01:19:57# The special value "tmp" will create the heap dumps in
01:19:57# your temp directory.
01:19:57omero.jvmcfg.heap_dump=
01:19:5701:19:57## (For documentation only)
01:19:57# Used only by the percent strategy. An integer between 0
01:19:57# and 100 which is the percent of active memory that will
01:19:57# be used by the service.
01:19:57omero.jvmcfg.percent=
01:19:5701:19:57## (For documentation only)
01:19:57# Contains other parameters which should be passed to the
01:19:57# JVM. The value of "append" is treated as if it were on
01:19:57# the command line so will be separated on whitespace.
01:19:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:19:57# results in two new arguments.
01:19:57# Note that when using `config set` from the command line
01:19:57# one may need to give a prior `--` option to prevent a value
01:19:57# starting with `-` from already being parsed as an option,
01:19:57# and values may need quoting to prevent whitespace or other
01:19:57# significant characters from being interpreted prematurely.
01:19:5701:19:57omero.jvmcfg.append=
01:19:5701:19:57## (For documentation only)
01:19:57# Manual override of the total system memory that
01:19:57# OMERO will *think* is present on the local OS (MB).
01:19:57# If unset, an attempt will be made to detect the actual
01:19:57# amount: first by using the Python library `psutil` and
01:19:57# if that is not installed, by running a Java tool. If
01:19:57# neither works, 4.0GB is assumed.
01:19:57omero.jvmcfg.system_memory=
01:19:5701:19:57## (For documentation only)
01:19:57# Suggestion for strategies as to the minimum memory
01:19:57# that they will use for calculating JVM settings (MB).
01:19:57omero.jvmcfg.min_system_memory=3414
01:19:5701:19:57## (For documentation only)
01:19:57# Suggestion for strategies as to the maximum memory
01:19:57# that they will use for calculating JVM settings (MB).
01:19:57omero.jvmcfg.max_system_memory=48000
01:19:5701:19:5701:19:57#############################################
01:19:57## Logging properties
01:19:57##
01:19:57## Note: changes to the default omero.logging values in
01:19:57## this file will *not* be reflected in OMERO.server
01:19:57## since they are defined in OMERO.py
01:19:57#############################################
01:19:5701:19:57## (For documentation only)
01:19:57# Relative server directory where the log files should be stored.
01:19:57omero.logging.directory=var/log/
01:19:5701:19:57## (For documentation only)
01:19:57# Whether the server log files should be rotated at a certain time
01:19:57# interval. If true, log files will be rolled over at midnight.
01:19:57# Otherwise, log files will be rolled over at a predetermined size,
01:19:57# see omero.logging.logsize for more information.
01:19:57omero.logging.timedlog=false
01:19:5701:19:57## (For documentation only)
01:19:57# If omero.logging.timedlog is false or unset, specifies the
01:19:57# maximum size of the server log files in bytes above which a
01:19:57# new log file should be created.
01:19:57omero.logging.logsize=5000000
01:19:5701:19:57## (For documentation only)
01:19:57# If omero.logging.timedlog is false or unset, specifies the
01:19:57# number of old server log files that should be kept. Old log
01:19:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:19:57omero.logging.lognum=9
01:19:5701:19:57## (For documentation only)
01:19:57# Specifies the threshold for the Python servers log files. Logging messages
01:19:57# which are less severe than this value will be ignored. For a list of
01:19:57# available values, see https://docs.python.org/3/library/logging.html#levels.
01:19:57omero.logging.level=20
01:19:5701:19:57#############################################
01:19:57## Ice overrides
01:19:57##
01:19:57## Though not used directly by OMERO, a number
01:19:57## of properties prefixed with "Ice.*" will
01:19:57## alter the behavior of the OMERO runtime
01:19:57## by configuring the Ice communicators. For a
01:19:57## full listing see:
01:19:57##
01:19:57## http://doc.zeroc.com/display/Ice/Property+Reference01:19:57## For more information see
01:19:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:19:57#############################################
01:19:5701:19:57# Disable IPv6 by setting to 0. Only needed in
01:19:57# certain situations.
01:19:57Ice.IPv6=1
01:19:5701:19:57# Glacier2Template IceSSL defaults and overrides,
01:19:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:19:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:19:57# update the corresponding IceSSL. property.
01:19:57omero.glacier2.IceSSL=
01:19:5701:19:57# Glacier2Template SSL maximum allowed protocol (mac bug)
01:19:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:19:57# Glacier2Template SSL allowed cipher suites
01:19:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:19:57# Glacier2Template SSL verification requirements
01:19:57omero.glacier2.IceSSL.VerifyPeer=0
01:19:57# Glacier2Template SSL allowed protocols
01:19:57omero.glacier2.IceSSL.Protocols=tls1
01:19:5701:19:57# Override the default set of OMERO services.
01:19:57# For example, to run OMERO.server with Blitz and Tables only
01:19:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:19:57# set this to ``master:Blitz-0,Tables-0``.
01:19:57# Also use this to distribute OMERO services across multiple nodes,
01:19:57# for example:
01:19:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:19:57# See
01:19:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:19:57omero.server.nodedescriptors=
01:19:5701:19:57#############################################
01:19:57## Darwin (OS X) specific defaults for templated configuration files only.
01:19:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:19:57## file.
01:19:57## Do not set these properties in ``omero config``, instead set the original
01:19:57## ``xxx.yyy`` property
01:19:57#############################################
01:19:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:19:5701:19:57## (For documentation only)
01:19:57# Name of the Python module to use when starting the Tables service
01:19:57omero.tables.module=runTables
01:19:5701:19:57#############################################
01:19:57## Server product name for release artifacts
01:19:57#############################################
01:19:57product.name=OMERO.server
01:19:5701:19:57#############################################
01:19:57### Properties below this marker are ignored by
01:19:57### omero.install.config_parser.PropertyParser
01:19:57### END
01:19:5701:19:57#############################################
01:19:57## Library versions
01:19:57#############################################
01:19:57##
01:19:57versions.findbugs=1.2.1
01:19:57versions.ice36=3.6.5
01:19:57versions.ice36_lib=36
01:19:57## internal
01:19:57versions.omeroshares36=3.6.3
01:19:57versions.omeromock36=3.6.3
01:19:57versions.icedb36=3.6.3
01:19:57versions.ipython=1.2.1
01:19:5701:19:57versions.janino=2.5.10
01:19:5701:19:57versions.reportng=1.1.1
01:19:5701:19:57versions.testng=7.5
01:19:57versions.velocity=1.4
01:19:5701:19:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:19:57versions.omero-scripts-url=${versions.omero-pypi}
01:19:5701:19:57###
01:19:57### Appended Values
01:19:57###
01:19:5701:19:57## Internal dependencies'
01:19:57+ echo '##
01:19:57## omero.properties
01:19:57## ----------------
01:19:57##
01:19:57## DO NOT EDIT!
01:19:57##
01:19:57##
01:19:57## Any of these properties can be altered by using `omero config`. MODIFYING
01:19:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:19:57## at compile time!
01:19:57##
01:19:57## For an overview of these properties, see
01:19:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:19:57##
01:19:57## Properties marked with "DEVELOPMENT" should not be used in production.
01:19:5701:19:57# Comma separated list of Ice transports available to clients. The default
01:19:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:19:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:19:57# will prevent all non-encrypted connections to the OMERO server.
01:19:57#
01:19:57# Additionally, there are two experimental values for using websockets:
01:19:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:19:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:19:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:19:57#
01:19:57# Note: When using websockets behind a web server like nginx, additional
01:19:57# configuration may be needed.
01:19:57omero.client.icetransports=ssl,tcp
01:19:5701:19:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:19:57# server
01:19:57omero.ports.prefix=
01:19:5701:19:57# The Glacier2 SSL port number to use
01:19:57omero.ports.ssl=4064
01:19:5701:19:57# The Glacier2 TCP port number to use (unencrypted)
01:19:57omero.ports.tcp=4063
01:19:5701:19:57# The Glacier2 WSS port number to use
01:19:57omero.ports.wss=4066
01:19:5701:19:57# The Glacier2 WS port number to use (unencrypted)
01:19:57omero.ports.ws=4065
01:19:5701:19:57# The IceGrid registry port number to use
01:19:57omero.ports.registry=4061
01:19:5701:19:57#############################################
01:19:57## JVM configuration
01:19:57##
01:19:57## Note: changes to the omero.jvmcfg properties
01:19:57## will *not* be reflected in OMERO.server
01:19:57## since they are defined in OMERO.py.
01:19:57#############################################
01:19:57## (For documentation only)
01:19:57# Memory strategy which will be used by default.
01:19:57# Options include: percent, manual
01:19:57omero.jvmcfg.strategy=percent
01:19:5701:19:57## (For documentation only)
01:19:57# Explicit value for the `-Xmx` argument, e.g.
01:19:57# "1g"
01:19:57omero.jvmcfg.heap_size=
01:19:5701:19:57## (For documentation only)
01:19:57# Explicit value for the MaxPermSize argument
01:19:57# to the JVM, e.g. "500M". Ignored for Java8+
01:19:57omero.jvmcfg.perm_gen=
01:19:5701:19:57## (For documentation only)
01:19:57# Toggles on or off heap dumps on OOMs. Default is "off".
01:19:57# The special value "tmp" will create the heap dumps in
01:19:57# your temp directory.
01:19:57omero.jvmcfg.heap_dump=
01:19:5701:19:57## (For documentation only)
01:19:57# Used only by the percent strategy. An integer between 0
01:19:57# and 100 which is the percent of active memory that will
01:19:57# be used by the service.
01:19:57omero.jvmcfg.percent=
01:19:5701:19:57## (For documentation only)
01:19:57# Contains other parameters which should be passed to the
01:19:57# JVM. The value of "append" is treated as if it were on
01:19:57# the command line so will be separated on whitespace.
01:19:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:19:57# results in two new arguments.
01:19:57# Note that when using `config set` from the command line
01:19:57# one may need to give a prior `--` option to prevent a value
01:19:57# starting with `-` from already being parsed as an option,
01:19:57# and values may need quoting to prevent whitespace or other
01:19:57# significant characters from being interpreted prematurely.
01:19:5701:19:57omero.jvmcfg.append=
01:19:5701:19:57## (For documentation only)
01:19:57# Manual override of the total system memory that
01:19:57# OMERO will *think* is present on the local OS (MB).
01:19:57# If unset, an attempt will be made to detect the actual
01:19:57# amount: first by using the Python library `psutil` and
01:19:57# if that is not installed, by running a Java tool. If
01:19:57# neither works, 4.0GB is assumed.
01:19:57omero.jvmcfg.system_memory=
01:19:5701:19:57## (For documentation only)
01:19:57# Suggestion for strategies as to the minimum memory
01:19:57# that they will use for calculating JVM settings (MB).
01:19:57omero.jvmcfg.min_system_memory=3414
01:19:5701:19:57## (For documentation only)
01:19:57# Suggestion for strategies as to the maximum memory
01:19:57# that they will use for calculating JVM settings (MB).
01:19:57omero.jvmcfg.max_system_memory=48000
01:19:5701:19:5701:19:57#############################################
01:19:57## Logging properties
01:19:57##
01:19:57## Note: changes to the default omero.logging values in
01:19:57## this file will *not* be reflected in OMERO.server
01:19:57## since they are defined in OMERO.py
01:19:57#############################################
01:19:5701:19:57## (For documentation only)
01:19:57# Relative server directory where the log files should be stored.
01:19:57omero.logging.directory=var/log/
01:19:5701:19:57## (For documentation only)
01:19:57# Whether the server log files should be rotated at a certain time
01:19:57# interval. If true, log files will be rolled over at midnight.
01:19:57# Otherwise, log files will be rolled over at a predetermined size,
01:19:57# see omero.logging.logsize for more information.
01:19:57omero.logging.timedlog=false
01:19:5701:19:57## (For documentation only)
01:19:57# If omero.logging.timedlog is false or unset, specifies the
01:19:57# maximum size of the server log files in bytes above which a
01:19:57# new log file should be created.
01:19:57omero.logging.logsize=5000000
01:19:5701:19:57## (For documentation only)
01:19:57# If omero.logging.timedlog is false or unset, specifies the
01:19:57# number of old server log files that should be kept. Old log
01:19:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:19:57omero.logging.lognum=9
01:19:5701:19:57## (For documentation only)
01:19:57# Specifies the threshold for the Python servers log files. Logging messages
01:19:57# which are less severe than this value will be ignored. For a list of
01:19:57# available values, see https://docs.python.org/3/library/logging.html#levels.
01:19:57omero.logging.level=20
01:19:5701:19:57#############################################
01:19:57## Ice overrides
01:19:57##
01:19:57## Though not used directly by OMERO, a number
01:19:57## of properties prefixed with "Ice.*" will
01:19:57## alter the behavior of the OMERO runtime
01:19:57## by configuring the Ice communicators. For a
01:19:57## full listing see:
01:19:57##
01:19:57## http://doc.zeroc.com/display/Ice/Property+Reference01:19:57## For more information see
01:19:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:19:57#############################################
01:19:5701:19:57# Disable IPv6 by setting to 0. Only needed in
01:19:57# certain situations.
01:19:57Ice.IPv6=1
01:19:5701:19:57# Glacier2Template IceSSL defaults and overrides,
01:19:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:19:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:19:57# update the corresponding IceSSL. property.
01:19:57omero.glacier2.IceSSL=
01:19:5701:19:57# Glacier2Template SSL maximum allowed protocol (mac bug)
01:19:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:19:57# Glacier2Template SSL allowed cipher suites
01:19:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:19:57# Glacier2Template SSL verification requirements
01:19:57omero.glacier2.IceSSL.VerifyPeer=0
01:19:57# Glacier2Template SSL allowed protocols
01:19:57omero.glacier2.IceSSL.Protocols=tls1
01:19:5701:19:57# Override the default set of OMERO services.
01:19:57# For example, to run OMERO.server with Blitz and Tables only
01:19:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:19:57# set this to ``master:Blitz-0,Tables-0``.
01:19:57# Also use this to distribute OMERO services across multiple nodes,
01:19:57# for example:
01:19:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:19:57# See
01:19:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:19:57omero.server.nodedescriptors=
01:19:5701:19:57#############################################
01:19:57## Darwin (OS X) specific defaults for templated configuration files only.
01:19:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:19:57## file.
01:19:57## Do not set these properties in ``omero config``, instead set the original
01:19:57## ``xxx.yyy`` property
01:19:57#############################################
01:19:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:19:5701:19:57## (For documentation only)
01:19:57# Name of the Python module to use when starting the Tables service
01:19:57omero.tables.module=runTables
01:19:5701:19:57#############################################
01:19:57## Server product name for release artifacts
01:19:57#############################################
01:19:57product.name=OMERO.server
01:19:5701:19:57#############################################
01:19:57### Properties below this marker are ignored by
01:19:57### omero.install.config_parser.PropertyParser
01:19:57### END
01:19:5701:19:57#############################################
01:19:57## Library versions
01:19:57#############################################
01:19:57##
01:19:57versions.findbugs=1.2.1
01:19:57versions.ice36=3.6.5
01:19:57versions.ice36_lib=36
01:19:57## internal
01:19:57versions.omeroshares36=3.6.3
01:19:57versions.omeromock36=3.6.3
01:19:57versions.icedb36=3.6.3
01:19:57versions.ipython=1.2.1
01:19:5701:19:57versions.janino=2.5.10
01:19:5701:19:57versions.reportng=1.1.1
01:19:5701:19:57versions.testng=7.5
01:19:57versions.velocity=1.4
01:19:5701:19:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:19:57versions.omero-scripts-url=${versions.omero-pypi}
01:19:5701:19:57###
01:19:57### Appended Values
01:19:57###
01:19:5701:19:57## Internal dependencies'
01:19:57+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/01:19:57+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive01:19:57+ echo versions.scripts-prefix=
01:19:57+ echo versions.scripts=merge_ci
01:19:57+ cat /home/omero/workspace/OMERO-push/version.properties
01:19:57+ git commit -a -m 'Add version.properties to etc/omero.properties'
01:19:57[detached HEAD c9427e48f4] Add version.properties to etc/omero.properties
01:19:57 1 file changed, 46 insertions(+), 6 deletions(-)
01:19:57+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
01:20:00To github.com:snoopycrimecop/openmicroscopy.git
01:20:00 + 8a224c870a...c9427e48f4 HEAD -> merge_ci (forced update)
01:20:00Finished: SUCCESS
