16:25:28Started by upstream project "Trigger" build number 13916:25:28originally caused by:
16:25:28 Started by user devspace16:25:28Running as SYSTEM
16:25:29Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
16:25:29The recommended git tool is: NONE
16:25:29No credentials specified
16:25:29 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
16:25:29Fetching changes from the remote Git repository
16:25:29 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
16:25:29Fetching upstream changes from https://github.com/ome/openmicroscopy.git16:25:29 > git --version # timeout=10
16:25:29 > git --version # 'git version 2.52.0'
16:25:29 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:25:35 > git rev-parse origin/develop^{commit} # timeout=10
16:25:35Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
16:25:35 > git config core.sparsecheckout # timeout=10
16:25:35 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
16:25:38Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
16:25:38 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
16:25:38Cleaning workspace
16:25:38 > git rev-parse --verify HEAD # timeout=10
16:25:38Resetting working tree
16:25:38 > git reset --hard # timeout=10
16:25:39 > git clean -fdx # timeout=10
16:25:39Copied 1 artifact from "OMERO-python-superbuild-build" build number 10816:25:39[OMERO-push] $ /bin/bash -xe /tmp/jenkins9185804369548795784.sh
16:25:39+ rm -rf /home/omero/workspace/OMERO-push/venv
16:26:01+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
16:26:21+ source /home/omero/workspace/OMERO-push/venv/bin/activate
16:26:21++ deactivate nondestructive
16:26:21++ '[' -n '' ']'
16:26:21++ '[' -n '' ']'
16:26:21++ hash -r
16:26:21++ '[' -n '' ']'
16:26:21++ unset VIRTUAL_ENV
16:26:21++ unset VIRTUAL_ENV_PROMPT
16:26:21++ '[' '!' nondestructive = nondestructive ']'
16:26:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
16:26:21++ export VIRTUAL_ENV
16:26:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:21++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:21++ export PATH
16:26:21++ '[' -n '' ']'
16:26:21++ '[' -z '' ']'
16:26:21++ _OLD_VIRTUAL_PS1=
16:26:21++ PS1='(venv) '
16:26:21++ export PS1
16:26:21++ VIRTUAL_ENV_PROMPT='(venv) '
16:26:21++ export VIRTUAL_ENV_PROMPT
16:26:21++ hash -r
16:26:21+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
16:26:22Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7016:26:22 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
16:26:22Installing collected packages: pip
16:26:22 Attempting uninstall: pip
16:26:22 Found existing installation: pip 24.0
16:26:23 Uninstalling pip-24.0:
16:26:23 Successfully uninstalled pip-24.0
16:26:34Successfully installed pip-26.2.2
16:26:3416:26:34[notice] A new release of pip is available: 26.2.2 -> 26.3
16:26:34[notice] To update, run: pip install --upgrade pip
16:26:34+ python -m pip install --upgrade certifi
16:26:35Collecting certifi
16:26:35 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
16:26:35Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
16:26:35Installing collected packages: certifi
16:26:36Successfully installed certifi-2026.10.23
16:26:3616:26:36[notice] A new release of pip is available: 26.2.2 -> 26.3
16:26:36[notice] To update, run: pip install --upgrade pip
16:26:36+ pip install -U scc
16:26:36Collecting scc
16:26:36 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
16:26:36Collecting PyGithub>=1.54 (from scc)
16:26:36 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
16:26:36Collecting PyYAML>=5.1 (from scc)
16:26:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
16:26:37Collecting future (from scc)
16:26:37 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
16:26:37Collecting ruamel.yaml (from scc)
16:26:37 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
16:26:37Collecting ruamel.yaml.jinja2 (from scc)
16:26:37 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
16:26:37Collecting six (from scc)
16:26:37 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
16:26:37Collecting urllib3<2 (from scc)
16:26:37 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
16:26:37Collecting yaclifw<0.3,>=0.2.0 (from scc)
16:26:37 Using cached yaclifw-0.2.0-py3-none-any.whl
16:26:37Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
16:26:37 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
16:26:37Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
16:26:37 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
16:26:37Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:26:37 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
16:26:37Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
16:26:37 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
16:26:37Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:26:37 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
16:26:38Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:26:38 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
16:26:38Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:26:38 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
16:26:38Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:26:38 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
16:26:38Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:26:38 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
16:26:38Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
16:26:38Using cached scc-0.20.0-py3-none-any.whl (48 kB)
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16:26:38Using cached pygithub-2.10.0-py3-none-any.whl (455 kB)
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16:26:38Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB)
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16:26:38Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
16:26:38Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
16:26:38Using cached requests-2.34.2-py3-none-any.whl (73 kB)
16:26:38Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
16:26:38Using cached idna-3.20-py3-none-any.whl (69 kB)
16:26:38Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
16:26:38Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:26:38Using cached pycparser-3.12-py3-none-any.whl (62 kB)
16:26:38Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
16:26:38Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
16:26:38Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
16:26:38Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
16:26:5316:26:53Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
16:26:5316:26:53[notice] A new release of pip is available: 26.2.2 -> 26.3
16:26:53[notice] To update, run: pip install --upgrade pip
16:26:53+ test -e src
16:26:53+ cd src
16:26:53++ git config github.user
16:26:53+ user=snoopycrimecop
16:26:53+ scc merge develop --no-ask --reset --shallow -S success-only
16:26:592026-11-09 16:26:59,583 [ scc.merge] INFO Merging Pull Request(s) based on develop
16:26:592026-11-09 16:26:59,584 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
16:26:592026-11-09 16:26:59,584 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
16:26:592026-11-09 16:26:59,584 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
16:26:592026-11-09 16:26:59,584 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
16:26:592026-11-09 16:26:59,584 [ scc.merge] INFO Excluding Pull Request(s) without successful status
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO Repository: ome/openmicroscopy
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO Excluded PRs:
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO Already up to date.
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO Merged PRs:
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
16:27:132026-11-09 16:27:13,772 [ scc.merge] INFO
16:27:13+ cp etc/omero.properties etc/omero.properties.bak
16:27:13+ rm etc/omero.properties
16:27:13+ touch etc/omero.properties
16:27:13++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
16:27:13+ ne=249
16:27:13++ sed -n 1,249p etc/omero.properties.bak
16:27:13+ line='##
16:27:13## omero.properties
16:27:13## ----------------
16:27:13##
16:27:13## DO NOT EDIT!
16:27:13##
16:27:13##
16:27:13## Any of these properties can be altered by using `omero config`. MODIFYING
16:27:13## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:27:13## at compile time!
16:27:13##
16:27:13## For an overview of these properties, see
16:27:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:27:13##
16:27:13## Properties marked with "DEVELOPMENT" should not be used in production.
16:27:1316:27:13# Comma separated list of Ice transports available to clients. The default
16:27:13# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:27:13# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:27:13# will prevent all non-encrypted connections to the OMERO server.
16:27:13#
16:27:13# Additionally, there are two experimental values for using websockets:
16:27:13# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:27:13# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:27:13# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:27:13#
16:27:13# Note: When using websockets behind a web server like nginx, additional
16:27:13# configuration may be needed.
16:27:13omero.client.icetransports=ssl,tcp
16:27:1316:27:13# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:27:13# server
16:27:13omero.ports.prefix=
16:27:1316:27:13# The Glacier2 SSL port number to use
16:27:13omero.ports.ssl=4064
16:27:1316:27:13# The Glacier2 TCP port number to use (unencrypted)
16:27:13omero.ports.tcp=4063
16:27:1316:27:13# The Glacier2 WSS port number to use
16:27:13omero.ports.wss=4066
16:27:1316:27:13# The Glacier2 WS port number to use (unencrypted)
16:27:13omero.ports.ws=4065
16:27:1316:27:13# The IceGrid registry port number to use
16:27:13omero.ports.registry=4061
16:27:1316:27:13#############################################
16:27:13## JVM configuration
16:27:13##
16:27:13## Note: changes to the omero.jvmcfg properties
16:27:13## will *not* be reflected in OMERO.server
16:27:13## since they are defined in OMERO.py.
16:27:13#############################################
16:27:13## (For documentation only)
16:27:13# Memory strategy which will be used by default.
16:27:13# Options include: percent, manual
16:27:13omero.jvmcfg.strategy=percent
16:27:1316:27:13## (For documentation only)
16:27:13# Explicit value for the `-Xmx` argument, e.g.
16:27:13# "1g"
16:27:13omero.jvmcfg.heap_size=
16:27:1316:27:13## (For documentation only)
16:27:13# Explicit value for the MaxPermSize argument
16:27:13# to the JVM, e.g. "500M". Ignored for Java8+
16:27:13omero.jvmcfg.perm_gen=
16:27:1316:27:13## (For documentation only)
16:27:13# Toggles on or off heap dumps on OOMs. Default is "off".
16:27:13# The special value "tmp" will create the heap dumps in
16:27:13# your temp directory.
16:27:13omero.jvmcfg.heap_dump=
16:27:1316:27:13## (For documentation only)
16:27:13# Used only by the percent strategy. An integer between 0
16:27:13# and 100 which is the percent of active memory that will
16:27:13# be used by the service.
16:27:13omero.jvmcfg.percent=
16:27:1316:27:13## (For documentation only)
16:27:13# Contains other parameters which should be passed to the
16:27:13# JVM. The value of "append" is treated as if it were on
16:27:13# the command line so will be separated on whitespace.
16:27:13# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:27:13# results in two new arguments.
16:27:13# Note that when using `config set` from the command line
16:27:13# one may need to give a prior `--` option to prevent a value
16:27:13# starting with `-` from already being parsed as an option,
16:27:13# and values may need quoting to prevent whitespace or other
16:27:13# significant characters from being interpreted prematurely.
16:27:1316:27:13omero.jvmcfg.append=
16:27:1316:27:13## (For documentation only)
16:27:13# Manual override of the total system memory that
16:27:13# OMERO will *think* is present on the local OS (MB).
16:27:13# If unset, an attempt will be made to detect the actual
16:27:13# amount: first by using the Python library `psutil` and
16:27:13# if that is not installed, by running a Java tool. If
16:27:13# neither works, 4.0GB is assumed.
16:27:13omero.jvmcfg.system_memory=
16:27:1316:27:13## (For documentation only)
16:27:13# Suggestion for strategies as to the minimum memory
16:27:13# that they will use for calculating JVM settings (MB).
16:27:13omero.jvmcfg.min_system_memory=3414
16:27:1316:27:13## (For documentation only)
16:27:13# Suggestion for strategies as to the maximum memory
16:27:13# that they will use for calculating JVM settings (MB).
16:27:13omero.jvmcfg.max_system_memory=48000
16:27:1316:27:1316:27:13#############################################
16:27:13## Logging properties
16:27:13##
16:27:13## Note: changes to the default omero.logging values in
16:27:13## this file will *not* be reflected in OMERO.server
16:27:13## since they are defined in OMERO.py
16:27:13#############################################
16:27:1316:27:13## (For documentation only)
16:27:13# Relative server directory where the log files should be stored.
16:27:13omero.logging.directory=var/log/
16:27:1316:27:13## (For documentation only)
16:27:13# Whether the server log files should be rotated at a certain time
16:27:13# interval. If true, log files will be rolled over at midnight.
16:27:13# Otherwise, log files will be rolled over at a predetermined size,
16:27:13# see omero.logging.logsize for more information.
16:27:13omero.logging.timedlog=false
16:27:1316:27:13## (For documentation only)
16:27:13# If omero.logging.timedlog is false or unset, specifies the
16:27:13# maximum size of the server log files in bytes above which a
16:27:13# new log file should be created.
16:27:13omero.logging.logsize=5000000
16:27:1316:27:13## (For documentation only)
16:27:13# If omero.logging.timedlog is false or unset, specifies the
16:27:13# number of old server log files that should be kept. Old log
16:27:13# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:27:13omero.logging.lognum=9
16:27:1316:27:13## (For documentation only)
16:27:13# Specifies the threshold for the Python servers log files. Logging messages
16:27:13# which are less severe than this value will be ignored. For a list of
16:27:13# available values, see https://docs.python.org/3/library/logging.html#levels.
16:27:13omero.logging.level=20
16:27:1316:27:13#############################################
16:27:13## Ice overrides
16:27:13##
16:27:13## Though not used directly by OMERO, a number
16:27:13## of properties prefixed with "Ice.*" will
16:27:13## alter the behavior of the OMERO runtime
16:27:13## by configuring the Ice communicators. For a
16:27:13## full listing see:
16:27:13##
16:27:13## http://doc.zeroc.com/display/Ice/Property+Reference16:27:13## For more information see
16:27:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:27:13#############################################
16:27:1316:27:13# Disable IPv6 by setting to 0. Only needed in
16:27:13# certain situations.
16:27:13Ice.IPv6=1
16:27:1316:27:13# Glacier2Template IceSSL defaults and overrides,
16:27:13# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
16:27:13# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:27:13# update the corresponding IceSSL. property.
16:27:13omero.glacier2.IceSSL=
16:27:1316:27:13# Glacier2Template SSL maximum allowed protocol (mac bug)
16:27:13omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:27:13# Glacier2Template SSL allowed cipher suites
16:27:13omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:27:13# Glacier2Template SSL verification requirements
16:27:13omero.glacier2.IceSSL.VerifyPeer=0
16:27:13# Glacier2Template SSL allowed protocols
16:27:13omero.glacier2.IceSSL.Protocols=tls1
16:27:1316:27:13# Override the default set of OMERO services.
16:27:13# For example, to run OMERO.server with Blitz and Tables only
16:27:13# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:27:13# set this to ``master:Blitz-0,Tables-0``.
16:27:13# Also use this to distribute OMERO services across multiple nodes,
16:27:13# for example:
16:27:13# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:27:13# See
16:27:13# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:27:13omero.server.nodedescriptors=
16:27:1316:27:13#############################################
16:27:13## Darwin (OS X) specific defaults for templated configuration files only.
16:27:13## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:27:13## file.
16:27:13## Do not set these properties in ``omero config``, instead set the original
16:27:13## ``xxx.yyy`` property
16:27:13#############################################
16:27:13_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:27:1316:27:13## (For documentation only)
16:27:13# Name of the Python module to use when starting the Tables service
16:27:13omero.tables.module=runTables
16:27:1316:27:13#############################################
16:27:13## Server product name for release artifacts
16:27:13#############################################
16:27:13product.name=OMERO.server
16:27:1316:27:13#############################################
16:27:13### Properties below this marker are ignored by
16:27:13### omero.install.config_parser.PropertyParser
16:27:13### END
16:27:1316:27:13#############################################
16:27:13## Library versions
16:27:13#############################################
16:27:13##
16:27:13versions.findbugs=1.2.1
16:27:13versions.ice36=3.6.5
16:27:13versions.ice36_lib=36
16:27:13## internal
16:27:13versions.omeroshares36=3.6.3
16:27:13versions.omeromock36=3.6.3
16:27:13versions.icedb36=3.6.3
16:27:13versions.ipython=1.2.1
16:27:1316:27:13versions.janino=2.5.10
16:27:1316:27:13versions.reportng=1.1.1
16:27:1316:27:13versions.testng=7.5
16:27:13versions.velocity=1.4
16:27:1316:27:13versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:27:13versions.omero-scripts-url=${versions.omero-pypi}
16:27:1316:27:13###
16:27:13### Appended Values
16:27:13###
16:27:1316:27:13## Internal dependencies'
16:27:13+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/16:27:13JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/16:27:13+ JENKINS_URL=http://172.18.0.6:8080/jenkins/16:27:13+ echo '##
16:27:13## omero.properties
16:27:13## ----------------
16:27:13##
16:27:13## DO NOT EDIT!
16:27:13##
16:27:13##
16:27:13## Any of these properties can be altered by using `omero config`. MODIFYING
16:27:13## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:27:13## at compile time!
16:27:13##
16:27:13## For an overview of these properties, see
16:27:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:27:13##
16:27:13## Properties marked with "DEVELOPMENT" should not be used in production.
16:27:1316:27:13# Comma separated list of Ice transports available to clients. The default
16:27:13# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:27:13# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:27:13# will prevent all non-encrypted connections to the OMERO server.
16:27:13#
16:27:13# Additionally, there are two experimental values for using websockets:
16:27:13# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:27:13# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:27:13# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:27:13#
16:27:13# Note: When using websockets behind a web server like nginx, additional
16:27:13# configuration may be needed.
16:27:13omero.client.icetransports=ssl,tcp
16:27:1316:27:13# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:27:13# server
16:27:13omero.ports.prefix=
16:27:1316:27:13# The Glacier2 SSL port number to use
16:27:13omero.ports.ssl=4064
16:27:1316:27:13# The Glacier2 TCP port number to use (unencrypted)
16:27:13omero.ports.tcp=4063
16:27:1316:27:13# The Glacier2 WSS port number to use
16:27:13omero.ports.wss=4066
16:27:1316:27:13# The Glacier2 WS port number to use (unencrypted)
16:27:13omero.ports.ws=4065
16:27:1316:27:13# The IceGrid registry port number to use
16:27:13omero.ports.registry=4061
16:27:1316:27:13#############################################
16:27:13## JVM configuration
16:27:13##
16:27:13## Note: changes to the omero.jvmcfg properties
16:27:13## will *not* be reflected in OMERO.server
16:27:13## since they are defined in OMERO.py.
16:27:13#############################################
16:27:13## (For documentation only)
16:27:13# Memory strategy which will be used by default.
16:27:13# Options include: percent, manual
16:27:13omero.jvmcfg.strategy=percent
16:27:1316:27:13## (For documentation only)
16:27:13# Explicit value for the `-Xmx` argument, e.g.
16:27:13# "1g"
16:27:13omero.jvmcfg.heap_size=
16:27:1316:27:13## (For documentation only)
16:27:13# Explicit value for the MaxPermSize argument
16:27:13# to the JVM, e.g. "500M". Ignored for Java8+
16:27:13omero.jvmcfg.perm_gen=
16:27:1316:27:13## (For documentation only)
16:27:13# Toggles on or off heap dumps on OOMs. Default is "off".
16:27:13# The special value "tmp" will create the heap dumps in
16:27:13# your temp directory.
16:27:13omero.jvmcfg.heap_dump=
16:27:1316:27:13## (For documentation only)
16:27:13# Used only by the percent strategy. An integer between 0
16:27:13# and 100 which is the percent of active memory that will
16:27:13# be used by the service.
16:27:13omero.jvmcfg.percent=
16:27:1316:27:13## (For documentation only)
16:27:13# Contains other parameters which should be passed to the
16:27:13# JVM. The value of "append" is treated as if it were on
16:27:13# the command line so will be separated on whitespace.
16:27:13# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:27:13# results in two new arguments.
16:27:13# Note that when using `config set` from the command line
16:27:13# one may need to give a prior `--` option to prevent a value
16:27:13# starting with `-` from already being parsed as an option,
16:27:13# and values may need quoting to prevent whitespace or other
16:27:13# significant characters from being interpreted prematurely.
16:27:1316:27:13omero.jvmcfg.append=
16:27:1316:27:13## (For documentation only)
16:27:13# Manual override of the total system memory that
16:27:13# OMERO will *think* is present on the local OS (MB).
16:27:13# If unset, an attempt will be made to detect the actual
16:27:13# amount: first by using the Python library `psutil` and
16:27:13# if that is not installed, by running a Java tool. If
16:27:13# neither works, 4.0GB is assumed.
16:27:13omero.jvmcfg.system_memory=
16:27:1316:27:13## (For documentation only)
16:27:13# Suggestion for strategies as to the minimum memory
16:27:13# that they will use for calculating JVM settings (MB).
16:27:13omero.jvmcfg.min_system_memory=3414
16:27:1316:27:13## (For documentation only)
16:27:13# Suggestion for strategies as to the maximum memory
16:27:13# that they will use for calculating JVM settings (MB).
16:27:13omero.jvmcfg.max_system_memory=48000
16:27:1316:27:1316:27:13#############################################
16:27:13## Logging properties
16:27:13##
16:27:13## Note: changes to the default omero.logging values in
16:27:13## this file will *not* be reflected in OMERO.server
16:27:13## since they are defined in OMERO.py
16:27:13#############################################
16:27:1316:27:13## (For documentation only)
16:27:13# Relative server directory where the log files should be stored.
16:27:13omero.logging.directory=var/log/
16:27:1316:27:13## (For documentation only)
16:27:13# Whether the server log files should be rotated at a certain time
16:27:13# interval. If true, log files will be rolled over at midnight.
16:27:13# Otherwise, log files will be rolled over at a predetermined size,
16:27:13# see omero.logging.logsize for more information.
16:27:13omero.logging.timedlog=false
16:27:1316:27:13## (For documentation only)
16:27:13# If omero.logging.timedlog is false or unset, specifies the
16:27:13# maximum size of the server log files in bytes above which a
16:27:13# new log file should be created.
16:27:13omero.logging.logsize=5000000
16:27:1316:27:13## (For documentation only)
16:27:13# If omero.logging.timedlog is false or unset, specifies the
16:27:13# number of old server log files that should be kept. Old log
16:27:13# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:27:13omero.logging.lognum=9
16:27:1316:27:13## (For documentation only)
16:27:13# Specifies the threshold for the Python servers log files. Logging messages
16:27:13# which are less severe than this value will be ignored. For a list of
16:27:13# available values, see https://docs.python.org/3/library/logging.html#levels.
16:27:13omero.logging.level=20
16:27:1316:27:13#############################################
16:27:13## Ice overrides
16:27:13##
16:27:13## Though not used directly by OMERO, a number
16:27:13## of properties prefixed with "Ice.*" will
16:27:13## alter the behavior of the OMERO runtime
16:27:13## by configuring the Ice communicators. For a
16:27:13## full listing see:
16:27:13##
16:27:13## http://doc.zeroc.com/display/Ice/Property+Reference16:27:13## For more information see
16:27:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:27:13#############################################
16:27:1316:27:13# Disable IPv6 by setting to 0. Only needed in
16:27:13# certain situations.
16:27:13Ice.IPv6=1
16:27:1316:27:13# Glacier2Template IceSSL defaults and overrides,
16:27:13# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
16:27:13# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:27:13# update the corresponding IceSSL. property.
16:27:13omero.glacier2.IceSSL=
16:27:1316:27:13# Glacier2Template SSL maximum allowed protocol (mac bug)
16:27:13omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:27:13# Glacier2Template SSL allowed cipher suites
16:27:13omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:27:13# Glacier2Template SSL verification requirements
16:27:13omero.glacier2.IceSSL.VerifyPeer=0
16:27:13# Glacier2Template SSL allowed protocols
16:27:13omero.glacier2.IceSSL.Protocols=tls1
16:27:1316:27:13# Override the default set of OMERO services.
16:27:13# For example, to run OMERO.server with Blitz and Tables only
16:27:13# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:27:13# set this to ``master:Blitz-0,Tables-0``.
16:27:13# Also use this to distribute OMERO services across multiple nodes,
16:27:13# for example:
16:27:13# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:27:13# See
16:27:13# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:27:13omero.server.nodedescriptors=
16:27:1316:27:13#############################################
16:27:13## Darwin (OS X) specific defaults for templated configuration files only.
16:27:13## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:27:13## file.
16:27:13## Do not set these properties in ``omero config``, instead set the original
16:27:13## ``xxx.yyy`` property
16:27:13#############################################
16:27:13_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:27:1316:27:13## (For documentation only)
16:27:13# Name of the Python module to use when starting the Tables service
16:27:13omero.tables.module=runTables
16:27:1316:27:13#############################################
16:27:13## Server product name for release artifacts
16:27:13#############################################
16:27:13product.name=OMERO.server
16:27:1316:27:13#############################################
16:27:13### Properties below this marker are ignored by
16:27:13### omero.install.config_parser.PropertyParser
16:27:13### END
16:27:1316:27:13#############################################
16:27:13## Library versions
16:27:13#############################################
16:27:13##
16:27:13versions.findbugs=1.2.1
16:27:13versions.ice36=3.6.5
16:27:13versions.ice36_lib=36
16:27:13## internal
16:27:13versions.omeroshares36=3.6.3
16:27:13versions.omeromock36=3.6.3
16:27:13versions.icedb36=3.6.3
16:27:13versions.ipython=1.2.1
16:27:1316:27:13versions.janino=2.5.10
16:27:1316:27:13versions.reportng=1.1.1
16:27:1316:27:13versions.testng=7.5
16:27:13versions.velocity=1.4
16:27:1316:27:13versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:27:13versions.omero-scripts-url=${versions.omero-pypi}
16:27:1316:27:13###
16:27:13### Appended Values
16:27:13###
16:27:1316:27:13## Internal dependencies'
16:27:13+ echo versions.omero-pypi=http://172.18.0.6:8080/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/16:27:13+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive16:27:13+ echo versions.scripts-prefix=
16:27:13+ echo versions.scripts=merge_ci
16:27:13++ curl -fsSL http://172.18.0.6:8080/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv16:27:13++ cut -f3
16:27:13curl: (7) Failed to connect to 172.18.0.6 port 8080: Connection refused
16:27:13+ OZPB_VERSION=
16:27:13+ echo versions.omero-zarr-pixel-buffer=
16:27:13+ cat /home/omero/workspace/OMERO-push/version.properties
16:27:13+ git commit -a -m 'Add version.properties to etc/omero.properties'
16:27:14[detached HEAD fbcd2244fb] Add version.properties to etc/omero.properties
16:27:14 1 file changed, 46 insertions(+), 6 deletions(-)
16:27:14+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
16:27:18To github.com:snoopycrimecop/openmicroscopy.git
16:27:18 + ff6a317efb...fbcd2244fb HEAD -> merge_ci (forced update)
16:27:18Finished: SUCCESS
