16:49:00Started by user devspace16:49:00Running as SYSTEM
16:49:00Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
16:49:00The recommended git tool is: NONE
16:49:00No credentials specified
16:49:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
16:49:00Fetching changes from the remote Git repository
16:49:00 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
16:49:00Fetching upstream changes from https://github.com/ome/openmicroscopy.git16:49:00 > git --version # timeout=10
16:49:00 > git --version # 'git version 2.52.0'
16:49:00 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:49:01 > git rev-parse origin/develop^{commit} # timeout=10
16:49:01Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
16:49:01 > git config core.sparsecheckout # timeout=10
16:49:01 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
16:49:03Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
16:49:03 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
16:49:03Cleaning workspace
16:49:03 > git rev-parse --verify HEAD # timeout=10
16:49:04Resetting working tree
16:49:04 > git reset --hard # timeout=10
16:49:04 > git clean -fdx # timeout=10
16:49:04Copied 1 artifact from "OMERO-python-superbuild-build" build number 10816:49:04[OMERO-push] $ /bin/bash -xe /tmp/jenkins2428224805432365569.sh
16:49:04+ rm -rf /home/omero/workspace/OMERO-push/venv
16:49:15+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
16:49:36+ source /home/omero/workspace/OMERO-push/venv/bin/activate
16:49:36++ deactivate nondestructive
16:49:36++ '[' -n '' ']'
16:49:36++ '[' -n '' ']'
16:49:36++ hash -r
16:49:36++ '[' -n '' ']'
16:49:36++ unset VIRTUAL_ENV
16:49:36++ unset VIRTUAL_ENV_PROMPT
16:49:36++ '[' '!' nondestructive = nondestructive ']'
16:49:36++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
16:49:36++ export VIRTUAL_ENV
16:49:36++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:49:36++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:49:36++ export PATH
16:49:36++ '[' -n '' ']'
16:49:36++ '[' -z '' ']'
16:49:36++ _OLD_VIRTUAL_PS1=
16:49:36++ PS1='(venv) '
16:49:36++ export PS1
16:49:36++ VIRTUAL_ENV_PROMPT='(venv) '
16:49:36++ export VIRTUAL_ENV_PROMPT
16:49:36++ hash -r
16:49:36+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
16:49:38Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7016:49:38 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
16:49:38Installing collected packages: pip
16:49:38 Attempting uninstall: pip
16:49:38 Found existing installation: pip 24.0
16:49:38 Uninstalling pip-24.0:
16:49:38 Successfully uninstalled pip-24.0
16:49:49Successfully installed pip-26.2.2
16:49:4916:49:49[notice] A new release of pip is available: 26.2.2 -> 26.3
16:49:49[notice] To update, run: pip install --upgrade pip
16:49:49+ python -m pip install --upgrade certifi
16:49:50Collecting certifi
16:49:50 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
16:49:50Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
16:49:50Installing collected packages: certifi
16:49:51Successfully installed certifi-2026.10.23
16:49:5116:49:51[notice] A new release of pip is available: 26.2.2 -> 26.3
16:49:51[notice] To update, run: pip install --upgrade pip
16:49:51+ pip install -U scc
16:49:52Collecting scc
16:49:52 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
16:49:52Collecting PyGithub>=1.54 (from scc)
16:49:52 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
16:49:52Collecting PyYAML>=5.1 (from scc)
16:49:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
16:49:52Collecting future (from scc)
16:49:52 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
16:49:52Collecting ruamel.yaml (from scc)
16:49:52 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
16:49:52Collecting ruamel.yaml.jinja2 (from scc)
16:49:52 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
16:49:52Collecting six (from scc)
16:49:52 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
16:49:52Collecting urllib3<2 (from scc)
16:49:52 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
16:49:52Collecting yaclifw<0.3,>=0.2.0 (from scc)
16:49:52 Using cached yaclifw-0.2.0-py3-none-any.whl
16:49:53Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
16:49:53 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
16:49:53Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
16:49:53 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
16:49:53Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:49:53 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
16:49:53Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
16:49:53 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
16:49:53Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:49:53 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
16:49:53Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:49:53 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
16:49:53Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:49:53 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
16:49:53Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:49:53 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
16:49:54Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:49:54 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
16:49:54Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
16:49:54Using cached scc-0.20.0-py3-none-any.whl (48 kB)
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16:49:54Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
16:49:54Using cached requests-2.34.2-py3-none-any.whl (73 kB)
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16:49:54Using cached idna-3.20-py3-none-any.whl (69 kB)
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16:49:54Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
16:49:54Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
16:50:1016:50:10Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
16:50:1016:50:10[notice] A new release of pip is available: 26.2.2 -> 26.3
16:50:10[notice] To update, run: pip install --upgrade pip
16:50:10+ test -e src
16:50:10+ cd src
16:50:10++ git config github.user
16:50:10+ user=snoopycrimecop
16:50:10+ scc merge develop --no-ask --reset --shallow -S success-only
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Merging Pull Request(s) based on develop
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
16:50:162026-11-09 16:50:16,627 [ scc.merge] INFO Excluding Pull Request(s) without successful status
16:50:292026-11-09 16:50:29,573 [ scc.merge] INFO Repository: ome/openmicroscopy
16:50:292026-11-09 16:50:29,573 [ scc.merge] INFO Excluded PRs:
16:50:292026-11-09 16:50:29,573 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
16:50:292026-11-09 16:50:29,573 [ scc.merge] INFO Already up to date.
16:50:292026-11-09 16:50:29,574 [ scc.merge] INFO
16:50:292026-11-09 16:50:29,574 [ scc.merge] INFO Merged PRs:
16:50:292026-11-09 16:50:29,574 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
16:50:292026-11-09 16:50:29,574 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
16:50:292026-11-09 16:50:29,574 [ scc.merge] INFO
16:50:29+ cp etc/omero.properties etc/omero.properties.bak
16:50:29+ rm etc/omero.properties
16:50:29+ touch etc/omero.properties
16:50:29++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
16:50:29+ ne=249
16:50:29++ sed -n 1,249p etc/omero.properties.bak
16:50:29+ line='##
16:50:29## omero.properties
16:50:29## ----------------
16:50:29##
16:50:29## DO NOT EDIT!
16:50:29##
16:50:29##
16:50:29## Any of these properties can be altered by using `omero config`. MODIFYING
16:50:29## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:50:29## at compile time!
16:50:29##
16:50:29## For an overview of these properties, see
16:50:29## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:50:29##
16:50:29## Properties marked with "DEVELOPMENT" should not be used in production.
16:50:2916:50:29# Comma separated list of Ice transports available to clients. The default
16:50:29# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:50:29# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:50:29# will prevent all non-encrypted connections to the OMERO server.
16:50:29#
16:50:29# Additionally, there are two experimental values for using websockets:
16:50:29# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:50:29# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:50:29# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:50:29#
16:50:29# Note: When using websockets behind a web server like nginx, additional
16:50:29# configuration may be needed.
16:50:29omero.client.icetransports=ssl,tcp
16:50:2916:50:29# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:50:29# server
16:50:29omero.ports.prefix=
16:50:2916:50:29# The Glacier2 SSL port number to use
16:50:29omero.ports.ssl=4064
16:50:2916:50:29# The Glacier2 TCP port number to use (unencrypted)
16:50:29omero.ports.tcp=4063
16:50:2916:50:29# The Glacier2 WSS port number to use
16:50:29omero.ports.wss=4066
16:50:2916:50:29# The Glacier2 WS port number to use (unencrypted)
16:50:29omero.ports.ws=4065
16:50:2916:50:29# The IceGrid registry port number to use
16:50:29omero.ports.registry=4061
16:50:2916:50:29#############################################
16:50:29## JVM configuration
16:50:29##
16:50:29## Note: changes to the omero.jvmcfg properties
16:50:29## will *not* be reflected in OMERO.server
16:50:29## since they are defined in OMERO.py.
16:50:29#############################################
16:50:29## (For documentation only)
16:50:29# Memory strategy which will be used by default.
16:50:29# Options include: percent, manual
16:50:29omero.jvmcfg.strategy=percent
16:50:2916:50:29## (For documentation only)
16:50:29# Explicit value for the `-Xmx` argument, e.g.
16:50:29# "1g"
16:50:29omero.jvmcfg.heap_size=
16:50:2916:50:29## (For documentation only)
16:50:29# Explicit value for the MaxPermSize argument
16:50:29# to the JVM, e.g. "500M". Ignored for Java8+
16:50:29omero.jvmcfg.perm_gen=
16:50:2916:50:29## (For documentation only)
16:50:29# Toggles on or off heap dumps on OOMs. Default is "off".
16:50:29# The special value "tmp" will create the heap dumps in
16:50:29# your temp directory.
16:50:29omero.jvmcfg.heap_dump=
16:50:2916:50:29## (For documentation only)
16:50:29# Used only by the percent strategy. An integer between 0
16:50:29# and 100 which is the percent of active memory that will
16:50:29# be used by the service.
16:50:29omero.jvmcfg.percent=
16:50:2916:50:29## (For documentation only)
16:50:29# Contains other parameters which should be passed to the
16:50:29# JVM. The value of "append" is treated as if it were on
16:50:29# the command line so will be separated on whitespace.
16:50:29# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:50:29# results in two new arguments.
16:50:29# Note that when using `config set` from the command line
16:50:29# one may need to give a prior `--` option to prevent a value
16:50:29# starting with `-` from already being parsed as an option,
16:50:29# and values may need quoting to prevent whitespace or other
16:50:29# significant characters from being interpreted prematurely.
16:50:2916:50:29omero.jvmcfg.append=
16:50:2916:50:29## (For documentation only)
16:50:29# Manual override of the total system memory that
16:50:29# OMERO will *think* is present on the local OS (MB).
16:50:29# If unset, an attempt will be made to detect the actual
16:50:29# amount: first by using the Python library `psutil` and
16:50:29# if that is not installed, by running a Java tool. If
16:50:29# neither works, 4.0GB is assumed.
16:50:29omero.jvmcfg.system_memory=
16:50:2916:50:29## (For documentation only)
16:50:29# Suggestion for strategies as to the minimum memory
16:50:29# that they will use for calculating JVM settings (MB).
16:50:29omero.jvmcfg.min_system_memory=3414
16:50:2916:50:29## (For documentation only)
16:50:29# Suggestion for strategies as to the maximum memory
16:50:29# that they will use for calculating JVM settings (MB).
16:50:29omero.jvmcfg.max_system_memory=48000
16:50:2916:50:2916:50:29#############################################
16:50:29## Logging properties
16:50:29##
16:50:29## Note: changes to the default omero.logging values in
16:50:29## this file will *not* be reflected in OMERO.server
16:50:29## since they are defined in OMERO.py
16:50:29#############################################
16:50:2916:50:29## (For documentation only)
16:50:29# Relative server directory where the log files should be stored.
16:50:29omero.logging.directory=var/log/
16:50:2916:50:29## (For documentation only)
16:50:29# Whether the server log files should be rotated at a certain time
16:50:29# interval. If true, log files will be rolled over at midnight.
16:50:29# Otherwise, log files will be rolled over at a predetermined size,
16:50:29# see omero.logging.logsize for more information.
16:50:29omero.logging.timedlog=false
16:50:2916:50:29## (For documentation only)
16:50:29# If omero.logging.timedlog is false or unset, specifies the
16:50:29# maximum size of the server log files in bytes above which a
16:50:29# new log file should be created.
16:50:29omero.logging.logsize=5000000
16:50:2916:50:29## (For documentation only)
16:50:29# If omero.logging.timedlog is false or unset, specifies the
16:50:29# number of old server log files that should be kept. Old log
16:50:29# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:50:29omero.logging.lognum=9
16:50:2916:50:29## (For documentation only)
16:50:29# Specifies the threshold for the Python servers log files. Logging messages
16:50:29# which are less severe than this value will be ignored. For a list of
16:50:29# available values, see https://docs.python.org/3/library/logging.html#levels.
16:50:29omero.logging.level=20
16:50:2916:50:29#############################################
16:50:29## Ice overrides
16:50:29##
16:50:29## Though not used directly by OMERO, a number
16:50:29## of properties prefixed with "Ice.*" will
16:50:29## alter the behavior of the OMERO runtime
16:50:29## by configuring the Ice communicators. For a
16:50:29## full listing see:
16:50:29##
16:50:29## http://doc.zeroc.com/display/Ice/Property+Reference16:50:29## For more information see
16:50:29## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:50:29#############################################
16:50:2916:50:29# Disable IPv6 by setting to 0. Only needed in
16:50:29# certain situations.
16:50:29Ice.IPv6=1
16:50:2916:50:29# Glacier2Template IceSSL defaults and overrides,
16:50:29# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
16:50:29# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:50:29# update the corresponding IceSSL. property.
16:50:29omero.glacier2.IceSSL=
16:50:2916:50:29# Glacier2Template SSL maximum allowed protocol (mac bug)
16:50:29omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:50:29# Glacier2Template SSL allowed cipher suites
16:50:29omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:50:29# Glacier2Template SSL verification requirements
16:50:29omero.glacier2.IceSSL.VerifyPeer=0
16:50:29# Glacier2Template SSL allowed protocols
16:50:29omero.glacier2.IceSSL.Protocols=tls1
16:50:2916:50:29# Override the default set of OMERO services.
16:50:29# For example, to run OMERO.server with Blitz and Tables only
16:50:29# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:50:29# set this to ``master:Blitz-0,Tables-0``.
16:50:29# Also use this to distribute OMERO services across multiple nodes,
16:50:29# for example:
16:50:29# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:50:29# See
16:50:29# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:50:29omero.server.nodedescriptors=
16:50:2916:50:29#############################################
16:50:29## Darwin (OS X) specific defaults for templated configuration files only.
16:50:29## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:50:29## file.
16:50:29## Do not set these properties in ``omero config``, instead set the original
16:50:29## ``xxx.yyy`` property
16:50:29#############################################
16:50:29_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:50:2916:50:29## (For documentation only)
16:50:29# Name of the Python module to use when starting the Tables service
16:50:29omero.tables.module=runTables
16:50:2916:50:29#############################################
16:50:29## Server product name for release artifacts
16:50:29#############################################
16:50:29product.name=OMERO.server
16:50:2916:50:29#############################################
16:50:29### Properties below this marker are ignored by
16:50:29### omero.install.config_parser.PropertyParser
16:50:29### END
16:50:2916:50:29#############################################
16:50:29## Library versions
16:50:29#############################################
16:50:29##
16:50:29versions.findbugs=1.2.1
16:50:29versions.ice36=3.6.5
16:50:29versions.ice36_lib=36
16:50:29## internal
16:50:29versions.omeroshares36=3.6.3
16:50:29versions.omeromock36=3.6.3
16:50:29versions.icedb36=3.6.3
16:50:29versions.ipython=1.2.1
16:50:2916:50:29versions.janino=2.5.10
16:50:2916:50:29versions.reportng=1.1.1
16:50:2916:50:29versions.testng=7.5
16:50:29versions.velocity=1.4
16:50:2916:50:29versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:50:29versions.omero-scripts-url=${versions.omero-pypi}
16:50:2916:50:29###
16:50:29### Appended Values
16:50:29###
16:50:2916:50:29## Internal dependencies'
16:50:29+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/16:50:29JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/16:50:29+ JENKINS_URL=http://172.18.0.8:8080/jenkins/16:50:29+ echo '##
16:50:29## omero.properties
16:50:29## ----------------
16:50:29##
16:50:29## DO NOT EDIT!
16:50:29##
16:50:29##
16:50:29## Any of these properties can be altered by using `omero config`. MODIFYING
16:50:29## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:50:29## at compile time!
16:50:29##
16:50:29## For an overview of these properties, see
16:50:29## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:50:29##
16:50:29## Properties marked with "DEVELOPMENT" should not be used in production.
16:50:2916:50:29# Comma separated list of Ice transports available to clients. The default
16:50:29# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:50:29# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:50:29# will prevent all non-encrypted connections to the OMERO server.
16:50:29#
16:50:29# Additionally, there are two experimental values for using websockets:
16:50:29# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:50:29# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:50:29# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:50:29#
16:50:29# Note: When using websockets behind a web server like nginx, additional
16:50:29# configuration may be needed.
16:50:29omero.client.icetransports=ssl,tcp
16:50:2916:50:29# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:50:29# server
16:50:29omero.ports.prefix=
16:50:2916:50:29# The Glacier2 SSL port number to use
16:50:29omero.ports.ssl=4064
16:50:2916:50:29# The Glacier2 TCP port number to use (unencrypted)
16:50:29omero.ports.tcp=4063
16:50:2916:50:29# The Glacier2 WSS port number to use
16:50:29omero.ports.wss=4066
16:50:2916:50:29# The Glacier2 WS port number to use (unencrypted)
16:50:29omero.ports.ws=4065
16:50:2916:50:29# The IceGrid registry port number to use
16:50:29omero.ports.registry=4061
16:50:2916:50:29#############################################
16:50:29## JVM configuration
16:50:29##
16:50:29## Note: changes to the omero.jvmcfg properties
16:50:29## will *not* be reflected in OMERO.server
16:50:29## since they are defined in OMERO.py.
16:50:29#############################################
16:50:29## (For documentation only)
16:50:29# Memory strategy which will be used by default.
16:50:29# Options include: percent, manual
16:50:29omero.jvmcfg.strategy=percent
16:50:2916:50:29## (For documentation only)
16:50:29# Explicit value for the `-Xmx` argument, e.g.
16:50:29# "1g"
16:50:29omero.jvmcfg.heap_size=
16:50:2916:50:29## (For documentation only)
16:50:29# Explicit value for the MaxPermSize argument
16:50:29# to the JVM, e.g. "500M". Ignored for Java8+
16:50:29omero.jvmcfg.perm_gen=
16:50:2916:50:29## (For documentation only)
16:50:29# Toggles on or off heap dumps on OOMs. Default is "off".
16:50:29# The special value "tmp" will create the heap dumps in
16:50:29# your temp directory.
16:50:29omero.jvmcfg.heap_dump=
16:50:2916:50:29## (For documentation only)
16:50:29# Used only by the percent strategy. An integer between 0
16:50:29# and 100 which is the percent of active memory that will
16:50:29# be used by the service.
16:50:29omero.jvmcfg.percent=
16:50:2916:50:29## (For documentation only)
16:50:29# Contains other parameters which should be passed to the
16:50:29# JVM. The value of "append" is treated as if it were on
16:50:29# the command line so will be separated on whitespace.
16:50:29# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:50:29# results in two new arguments.
16:50:29# Note that when using `config set` from the command line
16:50:29# one may need to give a prior `--` option to prevent a value
16:50:29# starting with `-` from already being parsed as an option,
16:50:29# and values may need quoting to prevent whitespace or other
16:50:29# significant characters from being interpreted prematurely.
16:50:2916:50:29omero.jvmcfg.append=
16:50:2916:50:29## (For documentation only)
16:50:29# Manual override of the total system memory that
16:50:29# OMERO will *think* is present on the local OS (MB).
16:50:29# If unset, an attempt will be made to detect the actual
16:50:29# amount: first by using the Python library `psutil` and
16:50:29# if that is not installed, by running a Java tool. If
16:50:29# neither works, 4.0GB is assumed.
16:50:29omero.jvmcfg.system_memory=
16:50:2916:50:29## (For documentation only)
16:50:29# Suggestion for strategies as to the minimum memory
16:50:29# that they will use for calculating JVM settings (MB).
16:50:29omero.jvmcfg.min_system_memory=3414
16:50:2916:50:29## (For documentation only)
16:50:29# Suggestion for strategies as to the maximum memory
16:50:29# that they will use for calculating JVM settings (MB).
16:50:29omero.jvmcfg.max_system_memory=48000
16:50:2916:50:2916:50:29#############################################
16:50:29## Logging properties
16:50:29##
16:50:29## Note: changes to the default omero.logging values in
16:50:29## this file will *not* be reflected in OMERO.server
16:50:29## since they are defined in OMERO.py
16:50:29#############################################
16:50:2916:50:29## (For documentation only)
16:50:29# Relative server directory where the log files should be stored.
16:50:29omero.logging.directory=var/log/
16:50:2916:50:29## (For documentation only)
16:50:29# Whether the server log files should be rotated at a certain time
16:50:29# interval. If true, log files will be rolled over at midnight.
16:50:29# Otherwise, log files will be rolled over at a predetermined size,
16:50:29# see omero.logging.logsize for more information.
16:50:29omero.logging.timedlog=false
16:50:2916:50:29## (For documentation only)
16:50:29# If omero.logging.timedlog is false or unset, specifies the
16:50:29# maximum size of the server log files in bytes above which a
16:50:29# new log file should be created.
16:50:29omero.logging.logsize=5000000
16:50:2916:50:29## (For documentation only)
16:50:29# If omero.logging.timedlog is false or unset, specifies the
16:50:29# number of old server log files that should be kept. Old log
16:50:29# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:50:29omero.logging.lognum=9
16:50:2916:50:29## (For documentation only)
16:50:29# Specifies the threshold for the Python servers log files. Logging messages
16:50:29# which are less severe than this value will be ignored. For a list of
16:50:29# available values, see https://docs.python.org/3/library/logging.html#levels.
16:50:29omero.logging.level=20
16:50:2916:50:29#############################################
16:50:29## Ice overrides
16:50:29##
16:50:29## Though not used directly by OMERO, a number
16:50:29## of properties prefixed with "Ice.*" will
16:50:29## alter the behavior of the OMERO runtime
16:50:29## by configuring the Ice communicators. For a
16:50:29## full listing see:
16:50:29##
16:50:29## http://doc.zeroc.com/display/Ice/Property+Reference16:50:29## For more information see
16:50:29## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:50:29#############################################
16:50:2916:50:29# Disable IPv6 by setting to 0. Only needed in
16:50:29# certain situations.
16:50:29Ice.IPv6=1
16:50:2916:50:29# Glacier2Template IceSSL defaults and overrides,
16:50:29# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
16:50:29# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:50:29# update the corresponding IceSSL. property.
16:50:29omero.glacier2.IceSSL=
16:50:2916:50:29# Glacier2Template SSL maximum allowed protocol (mac bug)
16:50:29omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:50:29# Glacier2Template SSL allowed cipher suites
16:50:29omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:50:29# Glacier2Template SSL verification requirements
16:50:29omero.glacier2.IceSSL.VerifyPeer=0
16:50:29# Glacier2Template SSL allowed protocols
16:50:29omero.glacier2.IceSSL.Protocols=tls1
16:50:2916:50:29# Override the default set of OMERO services.
16:50:29# For example, to run OMERO.server with Blitz and Tables only
16:50:29# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:50:29# set this to ``master:Blitz-0,Tables-0``.
16:50:29# Also use this to distribute OMERO services across multiple nodes,
16:50:29# for example:
16:50:29# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:50:29# See
16:50:29# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:50:29omero.server.nodedescriptors=
16:50:2916:50:29#############################################
16:50:29## Darwin (OS X) specific defaults for templated configuration files only.
16:50:29## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:50:29## file.
16:50:29## Do not set these properties in ``omero config``, instead set the original
16:50:29## ``xxx.yyy`` property
16:50:29#############################################
16:50:29_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:50:2916:50:29## (For documentation only)
16:50:29# Name of the Python module to use when starting the Tables service
16:50:29omero.tables.module=runTables
16:50:2916:50:29#############################################
16:50:29## Server product name for release artifacts
16:50:29#############################################
16:50:29product.name=OMERO.server
16:50:2916:50:29#############################################
16:50:29### Properties below this marker are ignored by
16:50:29### omero.install.config_parser.PropertyParser
16:50:29### END
16:50:2916:50:29#############################################
16:50:29## Library versions
16:50:29#############################################
16:50:29##
16:50:29versions.findbugs=1.2.1
16:50:29versions.ice36=3.6.5
16:50:29versions.ice36_lib=36
16:50:29## internal
16:50:29versions.omeroshares36=3.6.3
16:50:29versions.omeromock36=3.6.3
16:50:29versions.icedb36=3.6.3
16:50:29versions.ipython=1.2.1
16:50:2916:50:29versions.janino=2.5.10
16:50:2916:50:29versions.reportng=1.1.1
16:50:2916:50:29versions.testng=7.5
16:50:29versions.velocity=1.4
16:50:2916:50:29versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:50:29versions.omero-scripts-url=${versions.omero-pypi}
16:50:2916:50:29###
16:50:29### Appended Values
16:50:29###
16:50:2916:50:29## Internal dependencies'
16:50:29+ echo versions.omero-pypi=http://172.18.0.8:8080/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/16:50:29+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive16:50:29+ echo versions.scripts-prefix=
16:50:29+ echo versions.scripts=merge_ci
16:50:29++ curl -fsSL http://172.18.0.8:8080/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv16:50:29++ cut -f3
16:50:29+ OZPB_VERSION=0.7.2-SNAPSHOT
16:50:29+ echo versions.omero-zarr-pixel-buffer=0.7.2-SNAPSHOT
16:50:29+ cat /home/omero/workspace/OMERO-push/version.properties
16:50:29+ git commit -a -m 'Add version.properties to etc/omero.properties'
16:50:29[detached HEAD 2de208a43f] Add version.properties to etc/omero.properties
16:50:29 1 file changed, 46 insertions(+), 6 deletions(-)
16:50:29+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
16:50:33To github.com:snoopycrimecop/openmicroscopy.git
16:50:33 + fbcd2244fb...2de208a43f HEAD -> merge_ci (forced update)
16:50:33Finished: SUCCESS
