17:58:24Started by upstream project "Trigger" build number 14017:58:24originally caused by:
17:58:24 Started by user devspace17:58:24Running as SYSTEM
17:58:24Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
17:58:24The recommended git tool is: NONE
17:58:24No credentials specified
17:58:24 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
17:58:24Fetching changes from the remote Git repository
17:58:24 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
17:58:24Fetching upstream changes from https://github.com/ome/openmicroscopy.git17:58:24 > git --version # timeout=10
17:58:24 > git --version # 'git version 2.52.0'
17:58:24 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
17:58:25 > git rev-parse origin/develop^{commit} # timeout=10
17:58:25Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
17:58:25 > git config core.sparsecheckout # timeout=10
17:58:25 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
17:58:28Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
17:58:28 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
17:58:28Cleaning workspace
17:58:28 > git rev-parse --verify HEAD # timeout=10
17:58:28Resetting working tree
17:58:28 > git reset --hard # timeout=10
17:58:28 > git clean -fdx # timeout=10
17:58:28Copied 1 artifact from "OMERO-python-superbuild-build" build number 10917:58:28[OMERO-push] $ /bin/bash -xe /tmp/jenkins10141997851117486176.sh
17:58:28+ rm -rf /home/omero/workspace/OMERO-push/venv
17:58:39+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
17:58:58+ source /home/omero/workspace/OMERO-push/venv/bin/activate
17:58:58++ deactivate nondestructive
17:58:58++ '[' -n '' ']'
17:58:58++ '[' -n '' ']'
17:58:58++ hash -r
17:58:58++ '[' -n '' ']'
17:58:58++ unset VIRTUAL_ENV
17:58:58++ unset VIRTUAL_ENV_PROMPT
17:58:58++ '[' '!' nondestructive = nondestructive ']'
17:58:58++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
17:58:58++ export VIRTUAL_ENV
17:58:58++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:58:58++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:58:58++ export PATH
17:58:58++ '[' -n '' ']'
17:58:58++ '[' -z '' ']'
17:58:58++ _OLD_VIRTUAL_PS1=
17:58:58++ PS1='(venv) '
17:58:58++ export PS1
17:58:58++ VIRTUAL_ENV_PROMPT='(venv) '
17:58:58++ export VIRTUAL_ENV_PROMPT
17:58:58++ hash -r
17:58:58+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
17:58:59Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7017:58:59 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
17:58:59Installing collected packages: pip
17:58:59 Attempting uninstall: pip
17:58:59 Found existing installation: pip 24.0
17:58:59 Uninstalling pip-24.0:
17:58:59 Successfully uninstalled pip-24.0
17:59:10Successfully installed pip-26.2.2
17:59:1017:59:10[notice] A new release of pip is available: 26.2.2 -> 26.3
17:59:10[notice] To update, run: pip install --upgrade pip
17:59:10+ python -m pip install --upgrade certifi
17:59:10Collecting certifi
17:59:10 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
17:59:10Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
17:59:10Installing collected packages: certifi
17:59:11Successfully installed certifi-2026.10.23
17:59:1117:59:11[notice] A new release of pip is available: 26.2.2 -> 26.3
17:59:11[notice] To update, run: pip install --upgrade pip
17:59:11+ pip install -U scc
17:59:11Collecting scc
17:59:11 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
17:59:11Collecting PyGithub>=1.54 (from scc)
17:59:11 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
17:59:11Collecting PyYAML>=5.1 (from scc)
17:59:11 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
17:59:11Collecting future (from scc)
17:59:11 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
17:59:12Collecting ruamel.yaml (from scc)
17:59:12 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
17:59:12Collecting ruamel.yaml.jinja2 (from scc)
17:59:12 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
17:59:12Collecting six (from scc)
17:59:12 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
17:59:12Collecting urllib3<2 (from scc)
17:59:12 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
17:59:12Collecting yaclifw<0.3,>=0.2.0 (from scc)
17:59:12 Using cached yaclifw-0.2.0-py3-none-any.whl
17:59:12Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
17:59:12 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
17:59:12Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
17:59:12 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
17:59:12Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:59:12 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
17:59:12Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
17:59:12 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
17:59:12Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:59:12 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
17:59:12Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:59:12 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
17:59:12Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:59:12 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
17:59:12Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
17:59:12 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
17:59:12Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
17:59:12 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
17:59:12Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
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17:59:12Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
17:59:12Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
17:59:2617:59:26Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
17:59:2617:59:26[notice] A new release of pip is available: 26.2.2 -> 26.3
17:59:26[notice] To update, run: pip install --upgrade pip
17:59:26+ test -e src
17:59:26+ cd src
17:59:26++ git config github.user
17:59:26+ user=snoopycrimecop
17:59:26+ scc merge develop --no-ask --reset --shallow -S success-only
17:59:312026-11-09 17:59:31,988 [ scc.merge] INFO Merging Pull Request(s) based on develop
17:59:312026-11-09 17:59:31,989 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
17:59:312026-11-09 17:59:31,989 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
17:59:312026-11-09 17:59:31,989 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
17:59:312026-11-09 17:59:31,989 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
17:59:312026-11-09 17:59:31,989 [ scc.merge] INFO Excluding Pull Request(s) without successful status
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO Repository: ome/openmicroscopy
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO Excluded PRs:
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO Already up to date.
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO Merged PRs:
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
17:59:452026-11-09 17:59:45,070 [ scc.merge] INFO
17:59:45+ cp etc/omero.properties etc/omero.properties.bak
17:59:45+ rm etc/omero.properties
17:59:45+ touch etc/omero.properties
17:59:45++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
17:59:45+ ne=249
17:59:45++ sed -n 1,249p etc/omero.properties.bak
17:59:45+ line='##
17:59:45## omero.properties
17:59:45## ----------------
17:59:45##
17:59:45## DO NOT EDIT!
17:59:45##
17:59:45##
17:59:45## Any of these properties can be altered by using `omero config`. MODIFYING
17:59:45## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:59:45## at compile time!
17:59:45##
17:59:45## For an overview of these properties, see
17:59:45## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:59:45##
17:59:45## Properties marked with "DEVELOPMENT" should not be used in production.
17:59:4517:59:45# Comma separated list of Ice transports available to clients. The default
17:59:45# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:59:45# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:59:45# will prevent all non-encrypted connections to the OMERO server.
17:59:45#
17:59:45# Additionally, there are two experimental values for using websockets:
17:59:45# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:59:45# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:59:45# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:59:45#
17:59:45# Note: When using websockets behind a web server like nginx, additional
17:59:45# configuration may be needed.
17:59:45omero.client.icetransports=ssl,tcp
17:59:4517:59:45# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:59:45# server
17:59:45omero.ports.prefix=
17:59:4517:59:45# The Glacier2 SSL port number to use
17:59:45omero.ports.ssl=4064
17:59:4517:59:45# The Glacier2 TCP port number to use (unencrypted)
17:59:45omero.ports.tcp=4063
17:59:4517:59:45# The Glacier2 WSS port number to use
17:59:45omero.ports.wss=4066
17:59:4517:59:45# The Glacier2 WS port number to use (unencrypted)
17:59:45omero.ports.ws=4065
17:59:4517:59:45# The IceGrid registry port number to use
17:59:45omero.ports.registry=4061
17:59:4517:59:45#############################################
17:59:45## JVM configuration
17:59:45##
17:59:45## Note: changes to the omero.jvmcfg properties
17:59:45## will *not* be reflected in OMERO.server
17:59:45## since they are defined in OMERO.py.
17:59:45#############################################
17:59:45## (For documentation only)
17:59:45# Memory strategy which will be used by default.
17:59:45# Options include: percent, manual
17:59:45omero.jvmcfg.strategy=percent
17:59:4517:59:45## (For documentation only)
17:59:45# Explicit value for the `-Xmx` argument, e.g.
17:59:45# "1g"
17:59:45omero.jvmcfg.heap_size=
17:59:4517:59:45## (For documentation only)
17:59:45# Explicit value for the MaxPermSize argument
17:59:45# to the JVM, e.g. "500M". Ignored for Java8+
17:59:45omero.jvmcfg.perm_gen=
17:59:4517:59:45## (For documentation only)
17:59:45# Toggles on or off heap dumps on OOMs. Default is "off".
17:59:45# The special value "tmp" will create the heap dumps in
17:59:45# your temp directory.
17:59:45omero.jvmcfg.heap_dump=
17:59:4517:59:45## (For documentation only)
17:59:45# Used only by the percent strategy. An integer between 0
17:59:45# and 100 which is the percent of active memory that will
17:59:45# be used by the service.
17:59:45omero.jvmcfg.percent=
17:59:4517:59:45## (For documentation only)
17:59:45# Contains other parameters which should be passed to the
17:59:45# JVM. The value of "append" is treated as if it were on
17:59:45# the command line so will be separated on whitespace.
17:59:45# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:59:45# results in two new arguments.
17:59:45# Note that when using `config set` from the command line
17:59:45# one may need to give a prior `--` option to prevent a value
17:59:45# starting with `-` from already being parsed as an option,
17:59:45# and values may need quoting to prevent whitespace or other
17:59:45# significant characters from being interpreted prematurely.
17:59:4517:59:45omero.jvmcfg.append=
17:59:4517:59:45## (For documentation only)
17:59:45# Manual override of the total system memory that
17:59:45# OMERO will *think* is present on the local OS (MB).
17:59:45# If unset, an attempt will be made to detect the actual
17:59:45# amount: first by using the Python library `psutil` and
17:59:45# if that is not installed, by running a Java tool. If
17:59:45# neither works, 4.0GB is assumed.
17:59:45omero.jvmcfg.system_memory=
17:59:4517:59:45## (For documentation only)
17:59:45# Suggestion for strategies as to the minimum memory
17:59:45# that they will use for calculating JVM settings (MB).
17:59:45omero.jvmcfg.min_system_memory=3414
17:59:4517:59:45## (For documentation only)
17:59:45# Suggestion for strategies as to the maximum memory
17:59:45# that they will use for calculating JVM settings (MB).
17:59:45omero.jvmcfg.max_system_memory=48000
17:59:4517:59:4517:59:45#############################################
17:59:45## Logging properties
17:59:45##
17:59:45## Note: changes to the default omero.logging values in
17:59:45## this file will *not* be reflected in OMERO.server
17:59:45## since they are defined in OMERO.py
17:59:45#############################################
17:59:4517:59:45## (For documentation only)
17:59:45# Relative server directory where the log files should be stored.
17:59:45omero.logging.directory=var/log/
17:59:4517:59:45## (For documentation only)
17:59:45# Whether the server log files should be rotated at a certain time
17:59:45# interval. If true, log files will be rolled over at midnight.
17:59:45# Otherwise, log files will be rolled over at a predetermined size,
17:59:45# see omero.logging.logsize for more information.
17:59:45omero.logging.timedlog=false
17:59:4517:59:45## (For documentation only)
17:59:45# If omero.logging.timedlog is false or unset, specifies the
17:59:45# maximum size of the server log files in bytes above which a
17:59:45# new log file should be created.
17:59:45omero.logging.logsize=5000000
17:59:4517:59:45## (For documentation only)
17:59:45# If omero.logging.timedlog is false or unset, specifies the
17:59:45# number of old server log files that should be kept. Old log
17:59:45# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:59:45omero.logging.lognum=9
17:59:4517:59:45## (For documentation only)
17:59:45# Specifies the threshold for the Python servers log files. Logging messages
17:59:45# which are less severe than this value will be ignored. For a list of
17:59:45# available values, see https://docs.python.org/3/library/logging.html#levels.
17:59:45omero.logging.level=20
17:59:4517:59:45#############################################
17:59:45## Ice overrides
17:59:45##
17:59:45## Though not used directly by OMERO, a number
17:59:45## of properties prefixed with "Ice.*" will
17:59:45## alter the behavior of the OMERO runtime
17:59:45## by configuring the Ice communicators. For a
17:59:45## full listing see:
17:59:45##
17:59:45## http://doc.zeroc.com/display/Ice/Property+Reference17:59:45## For more information see
17:59:45## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:59:45#############################################
17:59:4517:59:45# Disable IPv6 by setting to 0. Only needed in
17:59:45# certain situations.
17:59:45Ice.IPv6=1
17:59:4517:59:45# Glacier2Template IceSSL defaults and overrides,
17:59:45# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
17:59:45# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:59:45# update the corresponding IceSSL. property.
17:59:45omero.glacier2.IceSSL=
17:59:4517:59:45# Glacier2Template SSL maximum allowed protocol (mac bug)
17:59:45omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:59:45# Glacier2Template SSL allowed cipher suites
17:59:45omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:59:45# Glacier2Template SSL verification requirements
17:59:45omero.glacier2.IceSSL.VerifyPeer=0
17:59:45# Glacier2Template SSL allowed protocols
17:59:45omero.glacier2.IceSSL.Protocols=tls1
17:59:4517:59:45# Override the default set of OMERO services.
17:59:45# For example, to run OMERO.server with Blitz and Tables only
17:59:45# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:59:45# set this to ``master:Blitz-0,Tables-0``.
17:59:45# Also use this to distribute OMERO services across multiple nodes,
17:59:45# for example:
17:59:45# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:59:45# See
17:59:45# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:59:45omero.server.nodedescriptors=
17:59:4517:59:45#############################################
17:59:45## Darwin (OS X) specific defaults for templated configuration files only.
17:59:45## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:59:45## file.
17:59:45## Do not set these properties in ``omero config``, instead set the original
17:59:45## ``xxx.yyy`` property
17:59:45#############################################
17:59:45_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:59:4517:59:45## (For documentation only)
17:59:45# Name of the Python module to use when starting the Tables service
17:59:45omero.tables.module=runTables
17:59:4517:59:45#############################################
17:59:45## Server product name for release artifacts
17:59:45#############################################
17:59:45product.name=OMERO.server
17:59:4517:59:45#############################################
17:59:45### Properties below this marker are ignored by
17:59:45### omero.install.config_parser.PropertyParser
17:59:45### END
17:59:4517:59:45#############################################
17:59:45## Library versions
17:59:45#############################################
17:59:45##
17:59:45versions.findbugs=1.2.1
17:59:45versions.ice36=3.6.5
17:59:45versions.ice36_lib=36
17:59:45## internal
17:59:45versions.omeroshares36=3.6.3
17:59:45versions.omeromock36=3.6.3
17:59:45versions.icedb36=3.6.3
17:59:45versions.ipython=1.2.1
17:59:4517:59:45versions.janino=2.5.10
17:59:4517:59:45versions.reportng=1.1.1
17:59:4517:59:45versions.testng=7.5
17:59:45versions.velocity=1.4
17:59:4517:59:45versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:59:45versions.omero-scripts-url=${versions.omero-pypi}
17:59:4517:59:45###
17:59:45### Appended Values
17:59:45###
17:59:4517:59:45## Internal dependencies'
17:59:45+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/17:59:45JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/17:59:45+ JENKINS_URL=http://172.18.0.8:8080/jenkins/17:59:45+ echo '##
17:59:45## omero.properties
17:59:45## ----------------
17:59:45##
17:59:45## DO NOT EDIT!
17:59:45##
17:59:45##
17:59:45## Any of these properties can be altered by using `omero config`. MODIFYING
17:59:45## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:59:45## at compile time!
17:59:45##
17:59:45## For an overview of these properties, see
17:59:45## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:59:45##
17:59:45## Properties marked with "DEVELOPMENT" should not be used in production.
17:59:4517:59:45# Comma separated list of Ice transports available to clients. The default
17:59:45# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:59:45# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:59:45# will prevent all non-encrypted connections to the OMERO server.
17:59:45#
17:59:45# Additionally, there are two experimental values for using websockets:
17:59:45# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:59:45# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:59:45# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:59:45#
17:59:45# Note: When using websockets behind a web server like nginx, additional
17:59:45# configuration may be needed.
17:59:45omero.client.icetransports=ssl,tcp
17:59:4517:59:45# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:59:45# server
17:59:45omero.ports.prefix=
17:59:4517:59:45# The Glacier2 SSL port number to use
17:59:45omero.ports.ssl=4064
17:59:4517:59:45# The Glacier2 TCP port number to use (unencrypted)
17:59:45omero.ports.tcp=4063
17:59:4517:59:45# The Glacier2 WSS port number to use
17:59:45omero.ports.wss=4066
17:59:4517:59:45# The Glacier2 WS port number to use (unencrypted)
17:59:45omero.ports.ws=4065
17:59:4517:59:45# The IceGrid registry port number to use
17:59:45omero.ports.registry=4061
17:59:4517:59:45#############################################
17:59:45## JVM configuration
17:59:45##
17:59:45## Note: changes to the omero.jvmcfg properties
17:59:45## will *not* be reflected in OMERO.server
17:59:45## since they are defined in OMERO.py.
17:59:45#############################################
17:59:45## (For documentation only)
17:59:45# Memory strategy which will be used by default.
17:59:45# Options include: percent, manual
17:59:45omero.jvmcfg.strategy=percent
17:59:4517:59:45## (For documentation only)
17:59:45# Explicit value for the `-Xmx` argument, e.g.
17:59:45# "1g"
17:59:45omero.jvmcfg.heap_size=
17:59:4517:59:45## (For documentation only)
17:59:45# Explicit value for the MaxPermSize argument
17:59:45# to the JVM, e.g. "500M". Ignored for Java8+
17:59:45omero.jvmcfg.perm_gen=
17:59:4517:59:45## (For documentation only)
17:59:45# Toggles on or off heap dumps on OOMs. Default is "off".
17:59:45# The special value "tmp" will create the heap dumps in
17:59:45# your temp directory.
17:59:45omero.jvmcfg.heap_dump=
17:59:4517:59:45## (For documentation only)
17:59:45# Used only by the percent strategy. An integer between 0
17:59:45# and 100 which is the percent of active memory that will
17:59:45# be used by the service.
17:59:45omero.jvmcfg.percent=
17:59:4517:59:45## (For documentation only)
17:59:45# Contains other parameters which should be passed to the
17:59:45# JVM. The value of "append" is treated as if it were on
17:59:45# the command line so will be separated on whitespace.
17:59:45# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:59:45# results in two new arguments.
17:59:45# Note that when using `config set` from the command line
17:59:45# one may need to give a prior `--` option to prevent a value
17:59:45# starting with `-` from already being parsed as an option,
17:59:45# and values may need quoting to prevent whitespace or other
17:59:45# significant characters from being interpreted prematurely.
17:59:4517:59:45omero.jvmcfg.append=
17:59:4517:59:45## (For documentation only)
17:59:45# Manual override of the total system memory that
17:59:45# OMERO will *think* is present on the local OS (MB).
17:59:45# If unset, an attempt will be made to detect the actual
17:59:45# amount: first by using the Python library `psutil` and
17:59:45# if that is not installed, by running a Java tool. If
17:59:45# neither works, 4.0GB is assumed.
17:59:45omero.jvmcfg.system_memory=
17:59:4517:59:45## (For documentation only)
17:59:45# Suggestion for strategies as to the minimum memory
17:59:45# that they will use for calculating JVM settings (MB).
17:59:45omero.jvmcfg.min_system_memory=3414
17:59:4517:59:45## (For documentation only)
17:59:45# Suggestion for strategies as to the maximum memory
17:59:45# that they will use for calculating JVM settings (MB).
17:59:45omero.jvmcfg.max_system_memory=48000
17:59:4517:59:4517:59:45#############################################
17:59:45## Logging properties
17:59:45##
17:59:45## Note: changes to the default omero.logging values in
17:59:45## this file will *not* be reflected in OMERO.server
17:59:45## since they are defined in OMERO.py
17:59:45#############################################
17:59:4517:59:45## (For documentation only)
17:59:45# Relative server directory where the log files should be stored.
17:59:45omero.logging.directory=var/log/
17:59:4517:59:45## (For documentation only)
17:59:45# Whether the server log files should be rotated at a certain time
17:59:45# interval. If true, log files will be rolled over at midnight.
17:59:45# Otherwise, log files will be rolled over at a predetermined size,
17:59:45# see omero.logging.logsize for more information.
17:59:45omero.logging.timedlog=false
17:59:4517:59:45## (For documentation only)
17:59:45# If omero.logging.timedlog is false or unset, specifies the
17:59:45# maximum size of the server log files in bytes above which a
17:59:45# new log file should be created.
17:59:45omero.logging.logsize=5000000
17:59:4517:59:45## (For documentation only)
17:59:45# If omero.logging.timedlog is false or unset, specifies the
17:59:45# number of old server log files that should be kept. Old log
17:59:45# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:59:45omero.logging.lognum=9
17:59:4517:59:45## (For documentation only)
17:59:45# Specifies the threshold for the Python servers log files. Logging messages
17:59:45# which are less severe than this value will be ignored. For a list of
17:59:45# available values, see https://docs.python.org/3/library/logging.html#levels.
17:59:45omero.logging.level=20
17:59:4517:59:45#############################################
17:59:45## Ice overrides
17:59:45##
17:59:45## Though not used directly by OMERO, a number
17:59:45## of properties prefixed with "Ice.*" will
17:59:45## alter the behavior of the OMERO runtime
17:59:45## by configuring the Ice communicators. For a
17:59:45## full listing see:
17:59:45##
17:59:45## http://doc.zeroc.com/display/Ice/Property+Reference17:59:45## For more information see
17:59:45## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:59:45#############################################
17:59:4517:59:45# Disable IPv6 by setting to 0. Only needed in
17:59:45# certain situations.
17:59:45Ice.IPv6=1
17:59:4517:59:45# Glacier2Template IceSSL defaults and overrides,
17:59:45# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
17:59:45# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:59:45# update the corresponding IceSSL. property.
17:59:45omero.glacier2.IceSSL=
17:59:4517:59:45# Glacier2Template SSL maximum allowed protocol (mac bug)
17:59:45omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:59:45# Glacier2Template SSL allowed cipher suites
17:59:45omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:59:45# Glacier2Template SSL verification requirements
17:59:45omero.glacier2.IceSSL.VerifyPeer=0
17:59:45# Glacier2Template SSL allowed protocols
17:59:45omero.glacier2.IceSSL.Protocols=tls1
17:59:4517:59:45# Override the default set of OMERO services.
17:59:45# For example, to run OMERO.server with Blitz and Tables only
17:59:45# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:59:45# set this to ``master:Blitz-0,Tables-0``.
17:59:45# Also use this to distribute OMERO services across multiple nodes,
17:59:45# for example:
17:59:45# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:59:45# See
17:59:45# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:59:45omero.server.nodedescriptors=
17:59:4517:59:45#############################################
17:59:45## Darwin (OS X) specific defaults for templated configuration files only.
17:59:45## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:59:45## file.
17:59:45## Do not set these properties in ``omero config``, instead set the original
17:59:45## ``xxx.yyy`` property
17:59:45#############################################
17:59:45_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:59:4517:59:45## (For documentation only)
17:59:45# Name of the Python module to use when starting the Tables service
17:59:45omero.tables.module=runTables
17:59:4517:59:45#############################################
17:59:45## Server product name for release artifacts
17:59:45#############################################
17:59:45product.name=OMERO.server
17:59:4517:59:45#############################################
17:59:45### Properties below this marker are ignored by
17:59:45### omero.install.config_parser.PropertyParser
17:59:45### END
17:59:4517:59:45#############################################
17:59:45## Library versions
17:59:45#############################################
17:59:45##
17:59:45versions.findbugs=1.2.1
17:59:45versions.ice36=3.6.5
17:59:45versions.ice36_lib=36
17:59:45## internal
17:59:45versions.omeroshares36=3.6.3
17:59:45versions.omeromock36=3.6.3
17:59:45versions.icedb36=3.6.3
17:59:45versions.ipython=1.2.1
17:59:4517:59:45versions.janino=2.5.10
17:59:4517:59:45versions.reportng=1.1.1
17:59:4517:59:45versions.testng=7.5
17:59:45versions.velocity=1.4
17:59:4517:59:45versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:59:45versions.omero-scripts-url=${versions.omero-pypi}
17:59:4517:59:45###
17:59:45### Appended Values
17:59:45###
17:59:4517:59:45## Internal dependencies'
17:59:45+ echo versions.omero-pypi=http://172.18.0.8:8080/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/17:59:45+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive17:59:45+ echo versions.scripts-prefix=
17:59:45+ echo versions.scripts=merge_ci
17:59:45++ cut -f3
17:59:45++ curl -fsSL http://172.18.0.8:8080/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv17:59:45+ OZPB_VERSION=0.7.2-SNAPSHOT
17:59:45+ echo versions.omero-zarr-pixel-buffer=0.7.2-SNAPSHOT
17:59:45+ cat /home/omero/workspace/OMERO-push/version.properties
17:59:45+ git commit -a -m 'Add version.properties to etc/omero.properties'
17:59:45[detached HEAD e3c0f59347] Add version.properties to etc/omero.properties
17:59:45 1 file changed, 46 insertions(+), 6 deletions(-)
17:59:45+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
17:59:48To github.com:snoopycrimecop/openmicroscopy.git
17:59:48 + 2de208a43f...e3c0f59347 HEAD -> merge_ci (forced update)
17:59:48Finished: SUCCESS
