00:00:11Started by upstream project "Trigger" build number 14500:00:11originally caused by:
00:00:11 Started by timer
00:00:11Running as SYSTEM
00:00:11Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
00:00:11The recommended git tool is: NONE
00:00:11No credentials specified
00:00:11 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
00:00:11Fetching changes from the remote Git repository
00:00:11 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
00:00:11Fetching upstream changes from https://github.com/ome/openmicroscopy.git00:00:11 > git --version # timeout=10
00:00:11 > git --version # 'git version 2.52.0'
00:00:11 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:00:14 > git rev-parse origin/develop^{commit} # timeout=10
00:00:14Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
00:00:14 > git config core.sparsecheckout # timeout=10
00:00:14 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
00:00:18Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
00:00:18 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
00:00:18Cleaning workspace
00:00:18 > git rev-parse --verify HEAD # timeout=10
00:00:18Resetting working tree
00:00:18 > git reset --hard # timeout=10
00:00:18 > git clean -fdx # timeout=10
00:00:18Copied 1 artifact from "OMERO-python-superbuild-build" build number 11200:00:18[OMERO-push] $ /bin/bash -xe /tmp/jenkins15157098520601703200.sh
00:00:19+ rm -rf /home/omero/workspace/OMERO-push/venv
00:00:32+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
00:00:55+ source /home/omero/workspace/OMERO-push/venv/bin/activate
00:00:55++ deactivate nondestructive
00:00:55++ '[' -n '' ']'
00:00:55++ '[' -n '' ']'
00:00:55++ hash -r
00:00:55++ '[' -n '' ']'
00:00:55++ unset VIRTUAL_ENV
00:00:55++ unset VIRTUAL_ENV_PROMPT
00:00:55++ '[' '!' nondestructive = nondestructive ']'
00:00:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
00:00:55++ export VIRTUAL_ENV
00:00:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:00:55++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:00:55++ export PATH
00:00:55++ '[' -n '' ']'
00:00:55++ '[' -z '' ']'
00:00:55++ _OLD_VIRTUAL_PS1=
00:00:55++ PS1='(venv) '
00:00:55++ export PS1
00:00:55++ VIRTUAL_ENV_PROMPT='(venv) '
00:00:55++ export VIRTUAL_ENV_PROMPT
00:00:55++ hash -r
00:00:55+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
00:00:56Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7000:00:56 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
00:00:56Installing collected packages: pip
00:00:56 Attempting uninstall: pip
00:00:56 Found existing installation: pip 24.0
00:00:56 Uninstalling pip-24.0:
00:00:56 Successfully uninstalled pip-24.0
00:01:08Successfully installed pip-26.2.2
00:01:0800:01:08[notice] A new release of pip is available: 26.2.2 -> 26.3
00:01:08[notice] To update, run: pip install --upgrade pip
00:01:08+ python -m pip install --upgrade certifi
00:01:09Collecting certifi
00:01:09 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
00:01:09Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
00:01:09Installing collected packages: certifi
00:01:09Successfully installed certifi-2026.10.23
00:01:0900:01:09[notice] A new release of pip is available: 26.2.2 -> 26.3
00:01:09[notice] To update, run: pip install --upgrade pip
00:01:09+ pip install -U scc
00:01:10Collecting scc
00:01:10 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
00:01:10Collecting PyGithub>=1.54 (from scc)
00:01:10 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
00:01:10Collecting PyYAML>=5.1 (from scc)
00:01:10 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:01:10Collecting future (from scc)
00:01:10 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
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00:01:10 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
00:01:10Collecting six (from scc)
00:01:10 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:01:10Collecting urllib3<2 (from scc)
00:01:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:01:10Collecting yaclifw<0.3,>=0.2.0 (from scc)
00:01:10 Using cached yaclifw-0.2.0-py3-none-any.whl
00:01:10Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
00:01:11 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
00:01:11Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
00:01:11 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:01:11Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:01:11 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
00:01:11Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
00:01:11 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:01:11Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:01:11 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
00:01:11Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:01:11 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
00:01:11Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:01:11 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
00:01:11Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:01:11 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
00:01:11Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:01:11 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
00:01:11Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
00:01:11Using cached scc-0.20.0-py3-none-any.whl (48 kB)
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00:01:11Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:01:11Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
00:01:2700:01:27Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
00:01:2700:01:27[notice] A new release of pip is available: 26.2.2 -> 26.3
00:01:27[notice] To update, run: pip install --upgrade pip
00:01:27+ test -e src
00:01:27+ cd src
00:01:27++ git config github.user
00:01:27+ user=snoopycrimecop
00:01:27+ scc merge develop --no-ask --reset --shallow -S success-only
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:01:332026-11-11 00:01:33,169 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO Repository: ome/openmicroscopy
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO Excluded PRs:
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO Already up to date.
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO Merged PRs:
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
00:01:472026-11-11 00:01:47,129 [ scc.merge] INFO
00:01:47+ cp etc/omero.properties etc/omero.properties.bak
00:01:47+ rm etc/omero.properties
00:01:47+ touch etc/omero.properties
00:01:47++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
00:01:47+ ne=249
00:01:47++ sed -n 1,249p etc/omero.properties.bak
00:01:47+ line='##
00:01:47## omero.properties
00:01:47## ----------------
00:01:47##
00:01:47## DO NOT EDIT!
00:01:47##
00:01:47##
00:01:47## Any of these properties can be altered by using `omero config`. MODIFYING
00:01:47## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:01:47## at compile time!
00:01:47##
00:01:47## For an overview of these properties, see
00:01:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:01:47##
00:01:47## Properties marked with "DEVELOPMENT" should not be used in production.
00:01:4700:01:47# Comma separated list of Ice transports available to clients. The default
00:01:47# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:01:47# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:01:47# will prevent all non-encrypted connections to the OMERO server.
00:01:47#
00:01:47# Additionally, there are two experimental values for using websockets:
00:01:47# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:01:47# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:01:47# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:01:47#
00:01:47# Note: When using websockets behind a web server like nginx, additional
00:01:47# configuration may be needed.
00:01:47omero.client.icetransports=ssl,tcp
00:01:4700:01:47# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:01:47# server
00:01:47omero.ports.prefix=
00:01:4700:01:47# The Glacier2 SSL port number to use
00:01:47omero.ports.ssl=4064
00:01:4700:01:47# The Glacier2 TCP port number to use (unencrypted)
00:01:47omero.ports.tcp=4063
00:01:4700:01:47# The Glacier2 WSS port number to use
00:01:47omero.ports.wss=4066
00:01:4700:01:47# The Glacier2 WS port number to use (unencrypted)
00:01:47omero.ports.ws=4065
00:01:4700:01:47# The IceGrid registry port number to use
00:01:47omero.ports.registry=4061
00:01:4700:01:47#############################################
00:01:47## JVM configuration
00:01:47##
00:01:47## Note: changes to the omero.jvmcfg properties
00:01:47## will *not* be reflected in OMERO.server
00:01:47## since they are defined in OMERO.py.
00:01:47#############################################
00:01:47## (For documentation only)
00:01:47# Memory strategy which will be used by default.
00:01:47# Options include: percent, manual
00:01:47omero.jvmcfg.strategy=percent
00:01:4700:01:47## (For documentation only)
00:01:47# Explicit value for the `-Xmx` argument, e.g.
00:01:47# "1g"
00:01:47omero.jvmcfg.heap_size=
00:01:4700:01:47## (For documentation only)
00:01:47# Explicit value for the MaxPermSize argument
00:01:47# to the JVM, e.g. "500M". Ignored for Java8+
00:01:47omero.jvmcfg.perm_gen=
00:01:4700:01:47## (For documentation only)
00:01:47# Toggles on or off heap dumps on OOMs. Default is "off".
00:01:47# The special value "tmp" will create the heap dumps in
00:01:47# your temp directory.
00:01:47omero.jvmcfg.heap_dump=
00:01:4700:01:47## (For documentation only)
00:01:47# Used only by the percent strategy. An integer between 0
00:01:47# and 100 which is the percent of active memory that will
00:01:47# be used by the service.
00:01:47omero.jvmcfg.percent=
00:01:4700:01:47## (For documentation only)
00:01:47# Contains other parameters which should be passed to the
00:01:47# JVM. The value of "append" is treated as if it were on
00:01:47# the command line so will be separated on whitespace.
00:01:47# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:01:47# results in two new arguments.
00:01:47# Note that when using `config set` from the command line
00:01:47# one may need to give a prior `--` option to prevent a value
00:01:47# starting with `-` from already being parsed as an option,
00:01:47# and values may need quoting to prevent whitespace or other
00:01:47# significant characters from being interpreted prematurely.
00:01:4700:01:47omero.jvmcfg.append=
00:01:4700:01:47## (For documentation only)
00:01:47# Manual override of the total system memory that
00:01:47# OMERO will *think* is present on the local OS (MB).
00:01:47# If unset, an attempt will be made to detect the actual
00:01:47# amount: first by using the Python library `psutil` and
00:01:47# if that is not installed, by running a Java tool. If
00:01:47# neither works, 4.0GB is assumed.
00:01:47omero.jvmcfg.system_memory=
00:01:4700:01:47## (For documentation only)
00:01:47# Suggestion for strategies as to the minimum memory
00:01:47# that they will use for calculating JVM settings (MB).
00:01:47omero.jvmcfg.min_system_memory=3414
00:01:4700:01:47## (For documentation only)
00:01:47# Suggestion for strategies as to the maximum memory
00:01:47# that they will use for calculating JVM settings (MB).
00:01:47omero.jvmcfg.max_system_memory=48000
00:01:4700:01:4700:01:47#############################################
00:01:47## Logging properties
00:01:47##
00:01:47## Note: changes to the default omero.logging values in
00:01:47## this file will *not* be reflected in OMERO.server
00:01:47## since they are defined in OMERO.py
00:01:47#############################################
00:01:4700:01:47## (For documentation only)
00:01:47# Relative server directory where the log files should be stored.
00:01:47omero.logging.directory=var/log/
00:01:4700:01:47## (For documentation only)
00:01:47# Whether the server log files should be rotated at a certain time
00:01:47# interval. If true, log files will be rolled over at midnight.
00:01:47# Otherwise, log files will be rolled over at a predetermined size,
00:01:47# see omero.logging.logsize for more information.
00:01:47omero.logging.timedlog=false
00:01:4700:01:47## (For documentation only)
00:01:47# If omero.logging.timedlog is false or unset, specifies the
00:01:47# maximum size of the server log files in bytes above which a
00:01:47# new log file should be created.
00:01:47omero.logging.logsize=5000000
00:01:4700:01:47## (For documentation only)
00:01:47# If omero.logging.timedlog is false or unset, specifies the
00:01:47# number of old server log files that should be kept. Old log
00:01:47# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:01:47omero.logging.lognum=9
00:01:4700:01:47## (For documentation only)
00:01:47# Specifies the threshold for the Python servers log files. Logging messages
00:01:47# which are less severe than this value will be ignored. For a list of
00:01:47# available values, see https://docs.python.org/3/library/logging.html#levels.
00:01:47omero.logging.level=20
00:01:4700:01:47#############################################
00:01:47## Ice overrides
00:01:47##
00:01:47## Though not used directly by OMERO, a number
00:01:47## of properties prefixed with "Ice.*" will
00:01:47## alter the behavior of the OMERO runtime
00:01:47## by configuring the Ice communicators. For a
00:01:47## full listing see:
00:01:47##
00:01:47## http://doc.zeroc.com/display/Ice/Property+Reference00:01:47## For more information see
00:01:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:01:47#############################################
00:01:4700:01:47# Disable IPv6 by setting to 0. Only needed in
00:01:47# certain situations.
00:01:47Ice.IPv6=1
00:01:4700:01:47# Glacier2Template IceSSL defaults and overrides,
00:01:47# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
00:01:47# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:01:47# update the corresponding IceSSL. property.
00:01:47omero.glacier2.IceSSL=
00:01:4700:01:47# Glacier2Template SSL maximum allowed protocol (mac bug)
00:01:47omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:01:47# Glacier2Template SSL allowed cipher suites
00:01:47omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:01:47# Glacier2Template SSL verification requirements
00:01:47omero.glacier2.IceSSL.VerifyPeer=0
00:01:47# Glacier2Template SSL allowed protocols
00:01:47omero.glacier2.IceSSL.Protocols=tls1
00:01:4700:01:47# Override the default set of OMERO services.
00:01:47# For example, to run OMERO.server with Blitz and Tables only
00:01:47# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:01:47# set this to ``master:Blitz-0,Tables-0``.
00:01:47# Also use this to distribute OMERO services across multiple nodes,
00:01:47# for example:
00:01:47# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:01:47# See
00:01:47# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:01:47omero.server.nodedescriptors=
00:01:4700:01:47#############################################
00:01:47## Darwin (OS X) specific defaults for templated configuration files only.
00:01:47## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:01:47## file.
00:01:47## Do not set these properties in ``omero config``, instead set the original
00:01:47## ``xxx.yyy`` property
00:01:47#############################################
00:01:47_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:01:4700:01:47## (For documentation only)
00:01:47# Name of the Python module to use when starting the Tables service
00:01:47omero.tables.module=runTables
00:01:4700:01:47#############################################
00:01:47## Server product name for release artifacts
00:01:47#############################################
00:01:47product.name=OMERO.server
00:01:4700:01:47#############################################
00:01:47### Properties below this marker are ignored by
00:01:47### omero.install.config_parser.PropertyParser
00:01:47### END
00:01:4700:01:47#############################################
00:01:47## Library versions
00:01:47#############################################
00:01:47##
00:01:47versions.findbugs=1.2.1
00:01:47versions.ice36=3.6.5
00:01:47versions.ice36_lib=36
00:01:47## internal
00:01:47versions.omeroshares36=3.6.3
00:01:47versions.omeromock36=3.6.3
00:01:47versions.icedb36=3.6.3
00:01:47versions.ipython=1.2.1
00:01:4700:01:47versions.janino=2.5.10
00:01:4700:01:47versions.reportng=1.1.1
00:01:4700:01:47versions.testng=7.5
00:01:47versions.velocity=1.4
00:01:4700:01:47versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:01:47versions.omero-scripts-url=${versions.omero-pypi}
00:01:4700:01:47###
00:01:47### Appended Values
00:01:47###
00:01:4700:01:47## Internal dependencies'
00:01:47+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/00:01:47JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/00:01:47+ echo '##
00:01:47## omero.properties
00:01:47## ----------------
00:01:47##
00:01:47## DO NOT EDIT!
00:01:47##
00:01:47##
00:01:47## Any of these properties can be altered by using `omero config`. MODIFYING
00:01:47## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:01:47## at compile time!
00:01:47##
00:01:47## For an overview of these properties, see
00:01:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:01:47##
00:01:47## Properties marked with "DEVELOPMENT" should not be used in production.
00:01:4700:01:47# Comma separated list of Ice transports available to clients. The default
00:01:47# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:01:47# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:01:47# will prevent all non-encrypted connections to the OMERO server.
00:01:47#
00:01:47# Additionally, there are two experimental values for using websockets:
00:01:47# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:01:47# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:01:47# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:01:47#
00:01:47# Note: When using websockets behind a web server like nginx, additional
00:01:47# configuration may be needed.
00:01:47omero.client.icetransports=ssl,tcp
00:01:4700:01:47# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:01:47# server
00:01:47omero.ports.prefix=
00:01:4700:01:47# The Glacier2 SSL port number to use
00:01:47omero.ports.ssl=4064
00:01:4700:01:47# The Glacier2 TCP port number to use (unencrypted)
00:01:47omero.ports.tcp=4063
00:01:4700:01:47# The Glacier2 WSS port number to use
00:01:47omero.ports.wss=4066
00:01:4700:01:47# The Glacier2 WS port number to use (unencrypted)
00:01:47omero.ports.ws=4065
00:01:4700:01:47# The IceGrid registry port number to use
00:01:47omero.ports.registry=4061
00:01:4700:01:47#############################################
00:01:47## JVM configuration
00:01:47##
00:01:47## Note: changes to the omero.jvmcfg properties
00:01:47## will *not* be reflected in OMERO.server
00:01:47## since they are defined in OMERO.py.
00:01:47#############################################
00:01:47## (For documentation only)
00:01:47# Memory strategy which will be used by default.
00:01:47# Options include: percent, manual
00:01:47omero.jvmcfg.strategy=percent
00:01:4700:01:47## (For documentation only)
00:01:47# Explicit value for the `-Xmx` argument, e.g.
00:01:47# "1g"
00:01:47omero.jvmcfg.heap_size=
00:01:4700:01:47## (For documentation only)
00:01:47# Explicit value for the MaxPermSize argument
00:01:47# to the JVM, e.g. "500M". Ignored for Java8+
00:01:47omero.jvmcfg.perm_gen=
00:01:4700:01:47## (For documentation only)
00:01:47# Toggles on or off heap dumps on OOMs. Default is "off".
00:01:47# The special value "tmp" will create the heap dumps in
00:01:47# your temp directory.
00:01:47omero.jvmcfg.heap_dump=
00:01:4700:01:47## (For documentation only)
00:01:47# Used only by the percent strategy. An integer between 0
00:01:47# and 100 which is the percent of active memory that will
00:01:47# be used by the service.
00:01:47omero.jvmcfg.percent=
00:01:4700:01:47## (For documentation only)
00:01:47# Contains other parameters which should be passed to the
00:01:47# JVM. The value of "append" is treated as if it were on
00:01:47# the command line so will be separated on whitespace.
00:01:47# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:01:47# results in two new arguments.
00:01:47# Note that when using `config set` from the command line
00:01:47# one may need to give a prior `--` option to prevent a value
00:01:47# starting with `-` from already being parsed as an option,
00:01:47# and values may need quoting to prevent whitespace or other
00:01:47# significant characters from being interpreted prematurely.
00:01:4700:01:47omero.jvmcfg.append=
00:01:4700:01:47## (For documentation only)
00:01:47# Manual override of the total system memory that
00:01:47# OMERO will *think* is present on the local OS (MB).
00:01:47# If unset, an attempt will be made to detect the actual
00:01:47# amount: first by using the Python library `psutil` and
00:01:47# if that is not installed, by running a Java tool. If
00:01:47# neither works, 4.0GB is assumed.
00:01:47omero.jvmcfg.system_memory=
00:01:4700:01:47## (For documentation only)
00:01:47# Suggestion for strategies as to the minimum memory
00:01:47# that they will use for calculating JVM settings (MB).
00:01:47omero.jvmcfg.min_system_memory=3414
00:01:4700:01:47## (For documentation only)
00:01:47# Suggestion for strategies as to the maximum memory
00:01:47# that they will use for calculating JVM settings (MB).
00:01:47omero.jvmcfg.max_system_memory=48000
00:01:4700:01:4700:01:47#############################################
00:01:47## Logging properties
00:01:47##
00:01:47## Note: changes to the default omero.logging values in
00:01:47## this file will *not* be reflected in OMERO.server
00:01:47## since they are defined in OMERO.py
00:01:47#############################################
00:01:4700:01:47## (For documentation only)
00:01:47# Relative server directory where the log files should be stored.
00:01:47omero.logging.directory=var/log/
00:01:4700:01:47## (For documentation only)
00:01:47# Whether the server log files should be rotated at a certain time
00:01:47# interval. If true, log files will be rolled over at midnight.
00:01:47# Otherwise, log files will be rolled over at a predetermined size,
00:01:47# see omero.logging.logsize for more information.
00:01:47omero.logging.timedlog=false
00:01:4700:01:47## (For documentation only)
00:01:47# If omero.logging.timedlog is false or unset, specifies the
00:01:47# maximum size of the server log files in bytes above which a
00:01:47# new log file should be created.
00:01:47omero.logging.logsize=5000000
00:01:4700:01:47## (For documentation only)
00:01:47# If omero.logging.timedlog is false or unset, specifies the
00:01:47# number of old server log files that should be kept. Old log
00:01:47# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:01:47omero.logging.lognum=9
00:01:4700:01:47## (For documentation only)
00:01:47# Specifies the threshold for the Python servers log files. Logging messages
00:01:47# which are less severe than this value will be ignored. For a list of
00:01:47# available values, see https://docs.python.org/3/library/logging.html#levels.
00:01:47omero.logging.level=20
00:01:4700:01:47#############################################
00:01:47## Ice overrides
00:01:47##
00:01:47## Though not used directly by OMERO, a number
00:01:47## of properties prefixed with "Ice.*" will
00:01:47## alter the behavior of the OMERO runtime
00:01:47## by configuring the Ice communicators. For a
00:01:47## full listing see:
00:01:47##
00:01:47## http://doc.zeroc.com/display/Ice/Property+Reference00:01:47## For more information see
00:01:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:01:47#############################################
00:01:4700:01:47# Disable IPv6 by setting to 0. Only needed in
00:01:47# certain situations.
00:01:47Ice.IPv6=1
00:01:4700:01:47# Glacier2Template IceSSL defaults and overrides,
00:01:47# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
00:01:47# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:01:47# update the corresponding IceSSL. property.
00:01:47omero.glacier2.IceSSL=
00:01:4700:01:47# Glacier2Template SSL maximum allowed protocol (mac bug)
00:01:47omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:01:47# Glacier2Template SSL allowed cipher suites
00:01:47omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:01:47# Glacier2Template SSL verification requirements
00:01:47omero.glacier2.IceSSL.VerifyPeer=0
00:01:47# Glacier2Template SSL allowed protocols
00:01:47omero.glacier2.IceSSL.Protocols=tls1
00:01:4700:01:47# Override the default set of OMERO services.
00:01:47# For example, to run OMERO.server with Blitz and Tables only
00:01:47# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:01:47# set this to ``master:Blitz-0,Tables-0``.
00:01:47# Also use this to distribute OMERO services across multiple nodes,
00:01:47# for example:
00:01:47# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:01:47# See
00:01:47# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:01:47omero.server.nodedescriptors=
00:01:4700:01:47#############################################
00:01:47## Darwin (OS X) specific defaults for templated configuration files only.
00:01:47## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:01:47## file.
00:01:47## Do not set these properties in ``omero config``, instead set the original
00:01:47## ``xxx.yyy`` property
00:01:47#############################################
00:01:47_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:01:4700:01:47## (For documentation only)
00:01:47# Name of the Python module to use when starting the Tables service
00:01:47omero.tables.module=runTables
00:01:4700:01:47#############################################
00:01:47## Server product name for release artifacts
00:01:47#############################################
00:01:47product.name=OMERO.server
00:01:4700:01:47#############################################
00:01:47### Properties below this marker are ignored by
00:01:47### omero.install.config_parser.PropertyParser
00:01:47### END
00:01:4700:01:47#############################################
00:01:47## Library versions
00:01:47#############################################
00:01:47##
00:01:47versions.findbugs=1.2.1
00:01:47versions.ice36=3.6.5
00:01:47versions.ice36_lib=36
00:01:47## internal
00:01:47versions.omeroshares36=3.6.3
00:01:47versions.omeromock36=3.6.3
00:01:47versions.icedb36=3.6.3
00:01:47versions.ipython=1.2.1
00:01:4700:01:47versions.janino=2.5.10
00:01:4700:01:47versions.reportng=1.1.1
00:01:4700:01:47versions.testng=7.5
00:01:47versions.velocity=1.4
00:01:4700:01:47versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:01:47versions.omero-scripts-url=${versions.omero-pypi}
00:01:4700:01:47###
00:01:47### Appended Values
00:01:47###
00:01:4700:01:47## Internal dependencies'
00:01:47+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/00:01:47+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive00:01:47+ echo versions.scripts-prefix=
00:01:47+ echo versions.scripts=merge_ci
00:01:47++ cut -f3
00:01:47++ curl -fsSL https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv00:01:47+ OZPB_VERSION=0.8.0-SNAPSHOT
00:01:47+ echo versions.omero-zarr-pixel-buffer=0.8.0-SNAPSHOT
00:01:47+ cat /home/omero/workspace/OMERO-push/version.properties
00:01:47+ git commit -a -m 'Add version.properties to etc/omero.properties'
00:01:47[detached HEAD e5b7dc4610] Add version.properties to etc/omero.properties
00:01:47 1 file changed, 46 insertions(+), 6 deletions(-)
00:01:47+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
00:01:50To github.com:snoopycrimecop/openmicroscopy.git
00:01:50 + 74ec6af822...e5b7dc4610 HEAD -> merge_ci (forced update)
00:01:50Finished: SUCCESS
