00:03:29Started by upstream project "Trigger" build number 14600:03:29originally caused by:
00:03:29 Started by timer
00:03:29Running as SYSTEM
00:03:29Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
00:03:29The recommended git tool is: NONE
00:03:29No credentials specified
00:03:29 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
00:03:29Fetching changes from the remote Git repository
00:03:29 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
00:03:29Fetching upstream changes from https://github.com/ome/openmicroscopy.git00:03:29 > git --version # timeout=10
00:03:29 > git --version # 'git version 2.52.0'
00:03:29 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:03:35 > git rev-parse origin/develop^{commit} # timeout=10
00:03:35Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
00:03:35 > git config core.sparsecheckout # timeout=10
00:03:35 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
00:03:37Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
00:03:37 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
00:03:37Cleaning workspace
00:03:37 > git rev-parse --verify HEAD # timeout=10
00:03:37Resetting working tree
00:03:37 > git reset --hard # timeout=10
00:03:38 > git clean -fdx # timeout=10
00:03:38Copied 1 artifact from "OMERO-python-superbuild-build" build number 11300:03:38[OMERO-push] $ /bin/bash -xe /tmp/jenkins10852981344463587689.sh
00:03:38+ rm -rf /home/omero/workspace/OMERO-push/venv
00:03:58+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
00:04:19+ source /home/omero/workspace/OMERO-push/venv/bin/activate
00:04:19++ deactivate nondestructive
00:04:19++ '[' -n '' ']'
00:04:19++ '[' -n '' ']'
00:04:19++ hash -r
00:04:19++ '[' -n '' ']'
00:04:19++ unset VIRTUAL_ENV
00:04:19++ unset VIRTUAL_ENV_PROMPT
00:04:19++ '[' '!' nondestructive = nondestructive ']'
00:04:19++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
00:04:19++ export VIRTUAL_ENV
00:04:19++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:04:19++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:04:19++ export PATH
00:04:19++ '[' -n '' ']'
00:04:19++ '[' -z '' ']'
00:04:19++ _OLD_VIRTUAL_PS1=
00:04:19++ PS1='(venv) '
00:04:19++ export PS1
00:04:19++ VIRTUAL_ENV_PROMPT='(venv) '
00:04:19++ export VIRTUAL_ENV_PROMPT
00:04:19++ hash -r
00:04:19+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
00:04:20Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7000:04:20 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
00:04:20Installing collected packages: pip
00:04:20 Attempting uninstall: pip
00:04:20 Found existing installation: pip 24.0
00:04:20 Uninstalling pip-24.0:
00:04:21 Successfully uninstalled pip-24.0
00:04:31Successfully installed pip-26.2.2
00:04:3100:04:31[notice] A new release of pip is available: 26.2.2 -> 26.3
00:04:31[notice] To update, run: pip install --upgrade pip
00:04:31+ python -m pip install --upgrade certifi
00:04:32Collecting certifi
00:04:32 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
00:04:32Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
00:04:32Installing collected packages: certifi
00:04:32Successfully installed certifi-2026.10.23
00:04:3200:04:32[notice] A new release of pip is available: 26.2.2 -> 26.3
00:04:32[notice] To update, run: pip install --upgrade pip
00:04:32+ pip install -U scc
00:04:33Collecting scc
00:04:33 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
00:04:33Collecting PyGithub>=1.54 (from scc)
00:04:33 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
00:04:33Collecting PyYAML>=5.1 (from scc)
00:04:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:04:33Collecting future (from scc)
00:04:33 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:04:33Collecting ruamel.yaml (from scc)
00:04:33 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
00:04:33Collecting ruamel.yaml.jinja2 (from scc)
00:04:33 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
00:04:33Collecting six (from scc)
00:04:33 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:04:33Collecting urllib3<2 (from scc)
00:04:33 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:04:33Collecting yaclifw<0.3,>=0.2.0 (from scc)
00:04:33 Using cached yaclifw-0.2.0-py3-none-any.whl
00:04:33Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
00:04:33 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
00:04:33Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
00:04:33 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:04:33Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:04:33 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
00:04:33Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
00:04:33 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:04:33Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:04:33 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
00:04:33Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:04:33 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
00:04:34Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:04:34 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
00:04:34Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:04:34 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
00:04:34Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:04:34 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
00:04:34Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
00:04:34Using cached scc-0.20.0-py3-none-any.whl (48 kB)
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00:04:34Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
00:04:34Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
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00:04:34Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:04:34Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
00:04:4700:04:47Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
00:04:4700:04:47[notice] A new release of pip is available: 26.2.2 -> 26.3
00:04:47[notice] To update, run: pip install --upgrade pip
00:04:47+ test -e src
00:04:47+ cd src
00:04:47++ git config github.user
00:04:47+ user=snoopycrimecop
00:04:47+ scc merge develop --no-ask --reset --shallow -S success-only
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:04:532026-11-12 00:04:53,129 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO Repository: ome/openmicroscopy
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO Excluded PRs:
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO Already up to date.
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO Merged PRs:
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
00:05:052026-11-12 00:05:05,902 [ scc.merge] INFO
00:05:05+ cp etc/omero.properties etc/omero.properties.bak
00:05:05+ rm etc/omero.properties
00:05:05+ touch etc/omero.properties
00:05:06++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
00:05:06+ ne=249
00:05:06++ sed -n 1,249p etc/omero.properties.bak
00:05:06+ line='##
00:05:06## omero.properties
00:05:06## ----------------
00:05:06##
00:05:06## DO NOT EDIT!
00:05:06##
00:05:06##
00:05:06## Any of these properties can be altered by using `omero config`. MODIFYING
00:05:06## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:05:06## at compile time!
00:05:06##
00:05:06## For an overview of these properties, see
00:05:06## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:05:06##
00:05:06## Properties marked with "DEVELOPMENT" should not be used in production.
00:05:0600:05:06# Comma separated list of Ice transports available to clients. The default
00:05:06# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:05:06# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:05:06# will prevent all non-encrypted connections to the OMERO server.
00:05:06#
00:05:06# Additionally, there are two experimental values for using websockets:
00:05:06# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:05:06# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:05:06# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:05:06#
00:05:06# Note: When using websockets behind a web server like nginx, additional
00:05:06# configuration may be needed.
00:05:06omero.client.icetransports=ssl,tcp
00:05:0600:05:06# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:05:06# server
00:05:06omero.ports.prefix=
00:05:0600:05:06# The Glacier2 SSL port number to use
00:05:06omero.ports.ssl=4064
00:05:0600:05:06# The Glacier2 TCP port number to use (unencrypted)
00:05:06omero.ports.tcp=4063
00:05:0600:05:06# The Glacier2 WSS port number to use
00:05:06omero.ports.wss=4066
00:05:0600:05:06# The Glacier2 WS port number to use (unencrypted)
00:05:06omero.ports.ws=4065
00:05:0600:05:06# The IceGrid registry port number to use
00:05:06omero.ports.registry=4061
00:05:0600:05:06#############################################
00:05:06## JVM configuration
00:05:06##
00:05:06## Note: changes to the omero.jvmcfg properties
00:05:06## will *not* be reflected in OMERO.server
00:05:06## since they are defined in OMERO.py.
00:05:06#############################################
00:05:06## (For documentation only)
00:05:06# Memory strategy which will be used by default.
00:05:06# Options include: percent, manual
00:05:06omero.jvmcfg.strategy=percent
00:05:0600:05:06## (For documentation only)
00:05:06# Explicit value for the `-Xmx` argument, e.g.
00:05:06# "1g"
00:05:06omero.jvmcfg.heap_size=
00:05:0600:05:06## (For documentation only)
00:05:06# Explicit value for the MaxPermSize argument
00:05:06# to the JVM, e.g. "500M". Ignored for Java8+
00:05:06omero.jvmcfg.perm_gen=
00:05:0600:05:06## (For documentation only)
00:05:06# Toggles on or off heap dumps on OOMs. Default is "off".
00:05:06# The special value "tmp" will create the heap dumps in
00:05:06# your temp directory.
00:05:06omero.jvmcfg.heap_dump=
00:05:0600:05:06## (For documentation only)
00:05:06# Used only by the percent strategy. An integer between 0
00:05:06# and 100 which is the percent of active memory that will
00:05:06# be used by the service.
00:05:06omero.jvmcfg.percent=
00:05:0600:05:06## (For documentation only)
00:05:06# Contains other parameters which should be passed to the
00:05:06# JVM. The value of "append" is treated as if it were on
00:05:06# the command line so will be separated on whitespace.
00:05:06# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:05:06# results in two new arguments.
00:05:06# Note that when using `config set` from the command line
00:05:06# one may need to give a prior `--` option to prevent a value
00:05:06# starting with `-` from already being parsed as an option,
00:05:06# and values may need quoting to prevent whitespace or other
00:05:06# significant characters from being interpreted prematurely.
00:05:0600:05:06omero.jvmcfg.append=
00:05:0600:05:06## (For documentation only)
00:05:06# Manual override of the total system memory that
00:05:06# OMERO will *think* is present on the local OS (MB).
00:05:06# If unset, an attempt will be made to detect the actual
00:05:06# amount: first by using the Python library `psutil` and
00:05:06# if that is not installed, by running a Java tool. If
00:05:06# neither works, 4.0GB is assumed.
00:05:06omero.jvmcfg.system_memory=
00:05:0600:05:06## (For documentation only)
00:05:06# Suggestion for strategies as to the minimum memory
00:05:06# that they will use for calculating JVM settings (MB).
00:05:06omero.jvmcfg.min_system_memory=3414
00:05:0600:05:06## (For documentation only)
00:05:06# Suggestion for strategies as to the maximum memory
00:05:06# that they will use for calculating JVM settings (MB).
00:05:06omero.jvmcfg.max_system_memory=48000
00:05:0600:05:0600:05:06#############################################
00:05:06## Logging properties
00:05:06##
00:05:06## Note: changes to the default omero.logging values in
00:05:06## this file will *not* be reflected in OMERO.server
00:05:06## since they are defined in OMERO.py
00:05:06#############################################
00:05:0600:05:06## (For documentation only)
00:05:06# Relative server directory where the log files should be stored.
00:05:06omero.logging.directory=var/log/
00:05:0600:05:06## (For documentation only)
00:05:06# Whether the server log files should be rotated at a certain time
00:05:06# interval. If true, log files will be rolled over at midnight.
00:05:06# Otherwise, log files will be rolled over at a predetermined size,
00:05:06# see omero.logging.logsize for more information.
00:05:06omero.logging.timedlog=false
00:05:0600:05:06## (For documentation only)
00:05:06# If omero.logging.timedlog is false or unset, specifies the
00:05:06# maximum size of the server log files in bytes above which a
00:05:06# new log file should be created.
00:05:06omero.logging.logsize=5000000
00:05:0600:05:06## (For documentation only)
00:05:06# If omero.logging.timedlog is false or unset, specifies the
00:05:06# number of old server log files that should be kept. Old log
00:05:06# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:05:06omero.logging.lognum=9
00:05:0600:05:06## (For documentation only)
00:05:06# Specifies the threshold for the Python servers log files. Logging messages
00:05:06# which are less severe than this value will be ignored. For a list of
00:05:06# available values, see https://docs.python.org/3/library/logging.html#levels.
00:05:06omero.logging.level=20
00:05:0600:05:06#############################################
00:05:06## Ice overrides
00:05:06##
00:05:06## Though not used directly by OMERO, a number
00:05:06## of properties prefixed with "Ice.*" will
00:05:06## alter the behavior of the OMERO runtime
00:05:06## by configuring the Ice communicators. For a
00:05:06## full listing see:
00:05:06##
00:05:06## http://doc.zeroc.com/display/Ice/Property+Reference00:05:06## For more information see
00:05:06## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:05:06#############################################
00:05:0600:05:06# Disable IPv6 by setting to 0. Only needed in
00:05:06# certain situations.
00:05:06Ice.IPv6=1
00:05:0600:05:06# Glacier2Template IceSSL defaults and overrides,
00:05:06# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
00:05:06# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:05:06# update the corresponding IceSSL. property.
00:05:06omero.glacier2.IceSSL=
00:05:0600:05:06# Glacier2Template SSL maximum allowed protocol (mac bug)
00:05:06omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:05:06# Glacier2Template SSL allowed cipher suites
00:05:06omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:05:06# Glacier2Template SSL verification requirements
00:05:06omero.glacier2.IceSSL.VerifyPeer=0
00:05:06# Glacier2Template SSL allowed protocols
00:05:06omero.glacier2.IceSSL.Protocols=tls1
00:05:0600:05:06# Override the default set of OMERO services.
00:05:06# For example, to run OMERO.server with Blitz and Tables only
00:05:06# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:05:06# set this to ``master:Blitz-0,Tables-0``.
00:05:06# Also use this to distribute OMERO services across multiple nodes,
00:05:06# for example:
00:05:06# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:05:06# See
00:05:06# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:05:06omero.server.nodedescriptors=
00:05:0600:05:06#############################################
00:05:06## Darwin (OS X) specific defaults for templated configuration files only.
00:05:06## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:05:06## file.
00:05:06## Do not set these properties in ``omero config``, instead set the original
00:05:06## ``xxx.yyy`` property
00:05:06#############################################
00:05:06_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:05:0600:05:06## (For documentation only)
00:05:06# Name of the Python module to use when starting the Tables service
00:05:06omero.tables.module=runTables
00:05:0600:05:06#############################################
00:05:06## Server product name for release artifacts
00:05:06#############################################
00:05:06product.name=OMERO.server
00:05:0600:05:06#############################################
00:05:06### Properties below this marker are ignored by
00:05:06### omero.install.config_parser.PropertyParser
00:05:06### END
00:05:0600:05:06#############################################
00:05:06## Library versions
00:05:06#############################################
00:05:06##
00:05:06versions.findbugs=1.2.1
00:05:06versions.ice36=3.6.5
00:05:06versions.ice36_lib=36
00:05:06## internal
00:05:06versions.omeroshares36=3.6.3
00:05:06versions.omeromock36=3.6.3
00:05:06versions.icedb36=3.6.3
00:05:06versions.ipython=1.2.1
00:05:0600:05:06versions.janino=2.5.10
00:05:0600:05:06versions.reportng=1.1.1
00:05:0600:05:06versions.testng=7.5
00:05:06versions.velocity=1.4
00:05:0600:05:06versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:05:06versions.omero-scripts-url=${versions.omero-pypi}
00:05:0600:05:06###
00:05:06### Appended Values
00:05:06###
00:05:0600:05:06## Internal dependencies'
00:05:06+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/00:05:06JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/00:05:06+ echo '##
00:05:06## omero.properties
00:05:06## ----------------
00:05:06##
00:05:06## DO NOT EDIT!
00:05:06##
00:05:06##
00:05:06## Any of these properties can be altered by using `omero config`. MODIFYING
00:05:06## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:05:06## at compile time!
00:05:06##
00:05:06## For an overview of these properties, see
00:05:06## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:05:06##
00:05:06## Properties marked with "DEVELOPMENT" should not be used in production.
00:05:0600:05:06# Comma separated list of Ice transports available to clients. The default
00:05:06# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:05:06# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:05:06# will prevent all non-encrypted connections to the OMERO server.
00:05:06#
00:05:06# Additionally, there are two experimental values for using websockets:
00:05:06# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:05:06# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:05:06# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:05:06#
00:05:06# Note: When using websockets behind a web server like nginx, additional
00:05:06# configuration may be needed.
00:05:06omero.client.icetransports=ssl,tcp
00:05:0600:05:06# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:05:06# server
00:05:06omero.ports.prefix=
00:05:0600:05:06# The Glacier2 SSL port number to use
00:05:06omero.ports.ssl=4064
00:05:0600:05:06# The Glacier2 TCP port number to use (unencrypted)
00:05:06omero.ports.tcp=4063
00:05:0600:05:06# The Glacier2 WSS port number to use
00:05:06omero.ports.wss=4066
00:05:0600:05:06# The Glacier2 WS port number to use (unencrypted)
00:05:06omero.ports.ws=4065
00:05:0600:05:06# The IceGrid registry port number to use
00:05:06omero.ports.registry=4061
00:05:0600:05:06#############################################
00:05:06## JVM configuration
00:05:06##
00:05:06## Note: changes to the omero.jvmcfg properties
00:05:06## will *not* be reflected in OMERO.server
00:05:06## since they are defined in OMERO.py.
00:05:06#############################################
00:05:06## (For documentation only)
00:05:06# Memory strategy which will be used by default.
00:05:06# Options include: percent, manual
00:05:06omero.jvmcfg.strategy=percent
00:05:0600:05:06## (For documentation only)
00:05:06# Explicit value for the `-Xmx` argument, e.g.
00:05:06# "1g"
00:05:06omero.jvmcfg.heap_size=
00:05:0600:05:06## (For documentation only)
00:05:06# Explicit value for the MaxPermSize argument
00:05:06# to the JVM, e.g. "500M". Ignored for Java8+
00:05:06omero.jvmcfg.perm_gen=
00:05:0600:05:06## (For documentation only)
00:05:06# Toggles on or off heap dumps on OOMs. Default is "off".
00:05:06# The special value "tmp" will create the heap dumps in
00:05:06# your temp directory.
00:05:06omero.jvmcfg.heap_dump=
00:05:0600:05:06## (For documentation only)
00:05:06# Used only by the percent strategy. An integer between 0
00:05:06# and 100 which is the percent of active memory that will
00:05:06# be used by the service.
00:05:06omero.jvmcfg.percent=
00:05:0600:05:06## (For documentation only)
00:05:06# Contains other parameters which should be passed to the
00:05:06# JVM. The value of "append" is treated as if it were on
00:05:06# the command line so will be separated on whitespace.
00:05:06# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:05:06# results in two new arguments.
00:05:06# Note that when using `config set` from the command line
00:05:06# one may need to give a prior `--` option to prevent a value
00:05:06# starting with `-` from already being parsed as an option,
00:05:06# and values may need quoting to prevent whitespace or other
00:05:06# significant characters from being interpreted prematurely.
00:05:0600:05:06omero.jvmcfg.append=
00:05:0600:05:06## (For documentation only)
00:05:06# Manual override of the total system memory that
00:05:06# OMERO will *think* is present on the local OS (MB).
00:05:06# If unset, an attempt will be made to detect the actual
00:05:06# amount: first by using the Python library `psutil` and
00:05:06# if that is not installed, by running a Java tool. If
00:05:06# neither works, 4.0GB is assumed.
00:05:06omero.jvmcfg.system_memory=
00:05:0600:05:06## (For documentation only)
00:05:06# Suggestion for strategies as to the minimum memory
00:05:06# that they will use for calculating JVM settings (MB).
00:05:06omero.jvmcfg.min_system_memory=3414
00:05:0600:05:06## (For documentation only)
00:05:06# Suggestion for strategies as to the maximum memory
00:05:06# that they will use for calculating JVM settings (MB).
00:05:06omero.jvmcfg.max_system_memory=48000
00:05:0600:05:0600:05:06#############################################
00:05:06## Logging properties
00:05:06##
00:05:06## Note: changes to the default omero.logging values in
00:05:06## this file will *not* be reflected in OMERO.server
00:05:06## since they are defined in OMERO.py
00:05:06#############################################
00:05:0600:05:06## (For documentation only)
00:05:06# Relative server directory where the log files should be stored.
00:05:06omero.logging.directory=var/log/
00:05:0600:05:06## (For documentation only)
00:05:06# Whether the server log files should be rotated at a certain time
00:05:06# interval. If true, log files will be rolled over at midnight.
00:05:06# Otherwise, log files will be rolled over at a predetermined size,
00:05:06# see omero.logging.logsize for more information.
00:05:06omero.logging.timedlog=false
00:05:0600:05:06## (For documentation only)
00:05:06# If omero.logging.timedlog is false or unset, specifies the
00:05:06# maximum size of the server log files in bytes above which a
00:05:06# new log file should be created.
00:05:06omero.logging.logsize=5000000
00:05:0600:05:06## (For documentation only)
00:05:06# If omero.logging.timedlog is false or unset, specifies the
00:05:06# number of old server log files that should be kept. Old log
00:05:06# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:05:06omero.logging.lognum=9
00:05:0600:05:06## (For documentation only)
00:05:06# Specifies the threshold for the Python servers log files. Logging messages
00:05:06# which are less severe than this value will be ignored. For a list of
00:05:06# available values, see https://docs.python.org/3/library/logging.html#levels.
00:05:06omero.logging.level=20
00:05:0600:05:06#############################################
00:05:06## Ice overrides
00:05:06##
00:05:06## Though not used directly by OMERO, a number
00:05:06## of properties prefixed with "Ice.*" will
00:05:06## alter the behavior of the OMERO runtime
00:05:06## by configuring the Ice communicators. For a
00:05:06## full listing see:
00:05:06##
00:05:06## http://doc.zeroc.com/display/Ice/Property+Reference00:05:06## For more information see
00:05:06## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:05:06#############################################
00:05:0600:05:06# Disable IPv6 by setting to 0. Only needed in
00:05:06# certain situations.
00:05:06Ice.IPv6=1
00:05:0600:05:06# Glacier2Template IceSSL defaults and overrides,
00:05:06# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
00:05:06# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:05:06# update the corresponding IceSSL. property.
00:05:06omero.glacier2.IceSSL=
00:05:0600:05:06# Glacier2Template SSL maximum allowed protocol (mac bug)
00:05:06omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:05:06# Glacier2Template SSL allowed cipher suites
00:05:06omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:05:06# Glacier2Template SSL verification requirements
00:05:06omero.glacier2.IceSSL.VerifyPeer=0
00:05:06# Glacier2Template SSL allowed protocols
00:05:06omero.glacier2.IceSSL.Protocols=tls1
00:05:0600:05:06# Override the default set of OMERO services.
00:05:06# For example, to run OMERO.server with Blitz and Tables only
00:05:06# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:05:06# set this to ``master:Blitz-0,Tables-0``.
00:05:06# Also use this to distribute OMERO services across multiple nodes,
00:05:06# for example:
00:05:06# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:05:06# See
00:05:06# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:05:06omero.server.nodedescriptors=
00:05:0600:05:06#############################################
00:05:06## Darwin (OS X) specific defaults for templated configuration files only.
00:05:06## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:05:06## file.
00:05:06## Do not set these properties in ``omero config``, instead set the original
00:05:06## ``xxx.yyy`` property
00:05:06#############################################
00:05:06_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:05:0600:05:06## (For documentation only)
00:05:06# Name of the Python module to use when starting the Tables service
00:05:06omero.tables.module=runTables
00:05:0600:05:06#############################################
00:05:06## Server product name for release artifacts
00:05:06#############################################
00:05:06product.name=OMERO.server
00:05:0600:05:06#############################################
00:05:06### Properties below this marker are ignored by
00:05:06### omero.install.config_parser.PropertyParser
00:05:06### END
00:05:0600:05:06#############################################
00:05:06## Library versions
00:05:06#############################################
00:05:06##
00:05:06versions.findbugs=1.2.1
00:05:06versions.ice36=3.6.5
00:05:06versions.ice36_lib=36
00:05:06## internal
00:05:06versions.omeroshares36=3.6.3
00:05:06versions.omeromock36=3.6.3
00:05:06versions.icedb36=3.6.3
00:05:06versions.ipython=1.2.1
00:05:0600:05:06versions.janino=2.5.10
00:05:0600:05:06versions.reportng=1.1.1
00:05:0600:05:06versions.testng=7.5
00:05:06versions.velocity=1.4
00:05:0600:05:06versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:05:06versions.omero-scripts-url=${versions.omero-pypi}
00:05:0600:05:06###
00:05:06### Appended Values
00:05:06###
00:05:0600:05:06## Internal dependencies'
00:05:06+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/00:05:06+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive00:05:06+ echo versions.scripts-prefix=
00:05:06+ echo versions.scripts=merge_ci
00:05:06++ cut -f3
00:05:06++ curl -fsSL https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv00:05:06+ OZPB_VERSION=0.8.0-SNAPSHOT
00:05:06+ echo versions.omero-zarr-pixel-buffer=0.8.0-SNAPSHOT
00:05:06+ cat /home/omero/workspace/OMERO-push/version.properties
00:05:06+ git commit -a -m 'Add version.properties to etc/omero.properties'
00:05:06[detached HEAD cefba2d1c3] Add version.properties to etc/omero.properties
00:05:06 1 file changed, 46 insertions(+), 6 deletions(-)
00:05:06+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
00:05:09To github.com:snoopycrimecop/openmicroscopy.git
00:05:09 + e5b7dc4610...cefba2d1c3 HEAD -> merge_ci (forced update)
00:05:09Finished: SUCCESS
