09:09:06Started by upstream project "Trigger" build number 16609:09:06originally caused by:
09:09:06 Started by user devspace09:09:06Running as SYSTEM
09:09:06Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
09:09:06The recommended git tool is: NONE
09:09:06No credentials specified
09:09:06Cloning the remote Git repository
09:09:06Cloning repository https://github.com/ome/openmicroscopy.git09:09:06 > git init /home/omero/workspace/OMERO-push/src # timeout=10
09:09:06Fetching upstream changes from https://github.com/ome/openmicroscopy.git09:09:06 > git --version # timeout=10
09:09:06 > git --version # 'git version 2.47.3'
09:09:06 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:13:20 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
09:13:20 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
09:13:20Avoid second fetch
09:13:20 > git rev-parse origin/develop^{commit} # timeout=10
09:13:20Checking out Revision fe46b79639396fd7473d874736918c245c8a7024 (origin/develop)
09:13:20 > git config core.sparsecheckout # timeout=10
09:13:20 > git checkout -f fe46b79639396fd7473d874736918c245c8a7024 # timeout=30
09:13:20Commit message: "Merge pull request #6447 from sbesson/OMERO.server_5.6.17_release_notes"
09:13:20 > git rev-list --no-walk fe46b79639396fd7473d874736918c245c8a7024 # timeout=10
09:13:20Cleaning workspace
09:13:20 > git rev-parse --verify HEAD # timeout=10
09:13:20Resetting working tree
09:13:20 > git reset --hard # timeout=10
09:13:21 > git clean -fdx # timeout=10
09:13:21Copied 1 artifact from "OMERO-python-superbuild-build" build number 12109:13:21[OMERO-push] $ /bin/bash -xe /tmp/jenkins12777706174304538809.sh
09:13:21+ python3.11 -mvenv venv
09:13:24+ source /home/omero/workspace/OMERO-push/venv/bin/activate
09:13:24++ deactivate nondestructive
09:13:24++ '[' -n '' ']'
09:13:24++ '[' -n '' ']'
09:13:24++ hash -r
09:13:24++ '[' -n '' ']'
09:13:24++ unset VIRTUAL_ENV
09:13:24++ unset VIRTUAL_ENV_PROMPT
09:13:24++ '[' '!' nondestructive = nondestructive ']'
09:13:24++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
09:13:24++ export VIRTUAL_ENV
09:13:24++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:13:24++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:13:24++ export PATH
09:13:24++ '[' -n '' ']'
09:13:24++ '[' -z '' ']'
09:13:24++ _OLD_VIRTUAL_PS1=
09:13:24++ PS1='(venv) '
09:13:24++ export PS1
09:13:24++ VIRTUAL_ENV_PROMPT='(venv) '
09:13:24++ export VIRTUAL_ENV_PROMPT
09:13:24++ hash -r
09:13:24+ pip install -U pip
09:13:24Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1)
09:13:25Collecting pip
09:13:25 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
09:13:25Installing collected packages: pip
09:13:25 Attempting uninstall: pip
09:13:25 Found existing installation: pip 22.3.1
09:13:25 Uninstalling pip-22.3.1:
09:13:25 Successfully uninstalled pip-22.3.1
09:13:26Successfully installed pip-26.0.1
09:13:26WARNING: There was an error checking the latest version of pip.
09:13:26+ pip install -U scc
09:13:26Collecting scc
09:13:26 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
09:13:26Collecting PyGithub>=1.54 (from scc)
09:13:26 Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB)
09:13:26Collecting PyYAML>=5.1 (from scc)
09:13:26 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
09:13:26Collecting future (from scc)
09:13:26 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:13:26Collecting ruamel.yaml (from scc)
09:13:26 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
09:13:26Collecting ruamel.yaml.jinja2 (from scc)
09:13:26 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
09:13:27Collecting six (from scc)
09:13:27 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:13:27Collecting urllib3<2 (from scc)
09:13:27 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
09:13:27Collecting yaclifw<0.3,>=0.2.0 (from scc)
09:13:27 Using cached yaclifw-0.2.0-py3-none-any.whl
09:13:27Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
09:13:27 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
09:13:27Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
09:13:27 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB)
09:13:27Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:13:27 Using cached pyjwt-2.12.1-py3-none-any.whl.metadata (4.1 kB)
09:13:27Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
09:13:27 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
09:13:27Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:13:27 Using cached cryptography-46.0.7-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
09:13:27Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:13:27 Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB)
09:13:27Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:13:27 Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB)
09:13:27Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:13:27 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
09:13:27Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:13:27 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
09:13:27Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:13:27 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
09:13:27Using cached scc-0.20.0-py3-none-any.whl (48 kB)
09:13:27Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:13:27Using cached pygithub-2.9.1-py3-none-any.whl (449 kB)
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09:13:27Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
09:13:27Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:13:27Using cached requests-2.33.1-py3-none-any.whl (64 kB)
09:13:27Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
09:13:27Using cached idna-3.11-py3-none-any.whl (71 kB)
09:13:27Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
09:13:27Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
09:13:27Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:13:27Using cached pycparser-3.0-py3-none-any.whl (48 kB)
09:13:27Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
09:13:27Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
09:13:27Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:13:27Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
09:13:2909:13:29Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.2.25 cffi-2.0.0 charset_normalizer-3.4.7 cryptography-46.0.7 future-1.0.0 idna-3.11 pycparser-3.0 pyjwt-2.12.1 pynacl-1.6.2 requests-2.33.1 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0
09:13:29+ test -e src
09:13:29+ cd src
09:13:29++ git config github.user
09:13:29+ user=snoopycrimecop
09:13:29+ scc merge develop --no-ask --reset --shallow -S success-only
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Merging Pull Request(s) based on develop
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
09:13:332026-04-20 09:13:33,561 [ scc.merge] INFO Excluding Pull Request(s) without successful status
09:13:372026-04-20 09:13:37,775 [ scc.merge] INFO Repository: ome/openmicroscopy
09:13:372026-04-20 09:13:37,775 [ scc.merge] INFO Excluded PRs:
09:13:372026-04-20 09:13:37,775 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
09:13:372026-04-20 09:13:37,775 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
09:13:372026-04-20 09:13:37,776 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
09:13:372026-04-20 09:13:37,776 [ scc.merge] INFO Already up to date.
09:13:372026-04-20 09:13:37,776 [ scc.merge] INFO
09:13:372026-04-20 09:13:37,776 [ scc.merge] INFO
09:13:37+ cp etc/omero.properties etc/omero.properties.bak
09:13:37+ rm etc/omero.properties
09:13:37+ touch etc/omero.properties
09:13:37++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
09:13:37+ ne=249
09:13:37++ sed -n 1,249p etc/omero.properties.bak
09:13:37+ line='##
09:13:37## omero.properties
09:13:37## ----------------
09:13:37##
09:13:37## DO NOT EDIT!
09:13:37##
09:13:37##
09:13:37## Any of these properties can be altered by using `omero config`. MODIFYING
09:13:37## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:13:37## at compile time!
09:13:37##
09:13:37## For an overview of these properties, see
09:13:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:13:37##
09:13:37## Properties marked with "DEVELOPMENT" should not be used in production.
09:13:3709:13:37# Comma separated list of Ice transports available to clients. The default
09:13:37# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:13:37# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:13:37# will prevent all non-encrypted connections to the OMERO server.
09:13:37#
09:13:37# Additionally, there are two experimental values for using websockets:
09:13:37# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:13:37# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:13:37# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:13:37#
09:13:37# Note: When using websockets behind a web server like nginx, additional
09:13:37# configuration may be needed.
09:13:37omero.client.icetransports=ssl,tcp
09:13:3709:13:37# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:13:37# server
09:13:37omero.ports.prefix=
09:13:3709:13:37# The Glacier2 SSL port number to use
09:13:37omero.ports.ssl=4064
09:13:3709:13:37# The Glacier2 TCP port number to use (unencrypted)
09:13:37omero.ports.tcp=4063
09:13:3709:13:37# The Glacier2 WSS port number to use
09:13:37omero.ports.wss=4066
09:13:3709:13:37# The Glacier2 WS port number to use (unencrypted)
09:13:37omero.ports.ws=4065
09:13:3709:13:37# The IceGrid registry port number to use
09:13:37omero.ports.registry=4061
09:13:3709:13:37#############################################
09:13:37## JVM configuration
09:13:37##
09:13:37## Note: changes to the omero.jvmcfg properties
09:13:37## will *not* be reflected in OMERO.server
09:13:37## since they are defined in OMERO.py.
09:13:37#############################################
09:13:37## (For documentation only)
09:13:37# Memory strategy which will be used by default.
09:13:37# Options include: percent, manual
09:13:37omero.jvmcfg.strategy=percent
09:13:3709:13:37## (For documentation only)
09:13:37# Explicit value for the `-Xmx` argument, e.g.
09:13:37# "1g"
09:13:37omero.jvmcfg.heap_size=
09:13:3709:13:37## (For documentation only)
09:13:37# Explicit value for the MaxPermSize argument
09:13:37# to the JVM, e.g. "500M". Ignored for Java8+
09:13:37omero.jvmcfg.perm_gen=
09:13:3709:13:37## (For documentation only)
09:13:37# Toggles on or off heap dumps on OOMs. Default is "off".
09:13:37# The special value "tmp" will create the heap dumps in
09:13:37# your temp directory.
09:13:37omero.jvmcfg.heap_dump=
09:13:3709:13:37## (For documentation only)
09:13:37# Used only by the percent strategy. An integer between 0
09:13:37# and 100 which is the percent of active memory that will
09:13:37# be used by the service.
09:13:37omero.jvmcfg.percent=
09:13:3709:13:37## (For documentation only)
09:13:37# Contains other parameters which should be passed to the
09:13:37# JVM. The value of "append" is treated as if it were on
09:13:37# the command line so will be separated on whitespace.
09:13:37# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:13:37# results in two new arguments.
09:13:37# Note that when using `config set` from the command line
09:13:37# one may need to give a prior `--` option to prevent a value
09:13:37# starting with `-` from already being parsed as an option,
09:13:37# and values may need quoting to prevent whitespace or other
09:13:37# significant characters from being interpreted prematurely.
09:13:3709:13:37omero.jvmcfg.append=
09:13:3709:13:37## (For documentation only)
09:13:37# Manual override of the total system memory that
09:13:37# OMERO will *think* is present on the local OS (MB).
09:13:37# If unset, an attempt will be made to detect the actual
09:13:37# amount: first by using the Python library `psutil` and
09:13:37# if that is not installed, by running a Java tool. If
09:13:37# neither works, 4.0GB is assumed.
09:13:37omero.jvmcfg.system_memory=
09:13:3709:13:37## (For documentation only)
09:13:37# Suggestion for strategies as to the minimum memory
09:13:37# that they will use for calculating JVM settings (MB).
09:13:37omero.jvmcfg.min_system_memory=3414
09:13:3709:13:37## (For documentation only)
09:13:37# Suggestion for strategies as to the maximum memory
09:13:37# that they will use for calculating JVM settings (MB).
09:13:37omero.jvmcfg.max_system_memory=48000
09:13:3709:13:3709:13:37#############################################
09:13:37## Logging properties
09:13:37##
09:13:37## Note: changes to the default omero.logging values in
09:13:37## this file will *not* be reflected in OMERO.server
09:13:37## since they are defined in OMERO.py
09:13:37#############################################
09:13:3709:13:37## (For documentation only)
09:13:37# Relative server directory where the log files should be stored.
09:13:37omero.logging.directory=var/log/
09:13:3709:13:37## (For documentation only)
09:13:37# Whether the server log files should be rotated at a certain time
09:13:37# interval. If true, log files will be rolled over at midnight.
09:13:37# Otherwise, log files will be rolled over at a predetermined size,
09:13:37# see omero.logging.logsize for more information.
09:13:37omero.logging.timedlog=false
09:13:3709:13:37## (For documentation only)
09:13:37# If omero.logging.timedlog is false or unset, specifies the
09:13:37# maximum size of the server log files in bytes above which a
09:13:37# new log file should be created.
09:13:37omero.logging.logsize=5000000
09:13:3709:13:37## (For documentation only)
09:13:37# If omero.logging.timedlog is false or unset, specifies the
09:13:37# number of old server log files that should be kept. Old log
09:13:37# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:13:37omero.logging.lognum=9
09:13:3709:13:37## (For documentation only)
09:13:37# Specifies the threshold for the Python servers log files. Logging messages
09:13:37# which are less severe than this value will be ignored. For a list of
09:13:37# available values, see https://docs.python.org/3/library/logging.html#levels.
09:13:37omero.logging.level=20
09:13:3709:13:37#############################################
09:13:37## Ice overrides
09:13:37##
09:13:37## Though not used directly by OMERO, a number
09:13:37## of properties prefixed with "Ice.*" will
09:13:37## alter the behavior of the OMERO runtime
09:13:37## by configuring the Ice communicators. For a
09:13:37## full listing see:
09:13:37##
09:13:37## http://doc.zeroc.com/display/Ice/Property+Reference09:13:37## For more information see
09:13:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:13:37#############################################
09:13:3709:13:37# Disable IPv6 by setting to 0. Only needed in
09:13:37# certain situations.
09:13:37Ice.IPv6=1
09:13:3709:13:37# Glacier2Template IceSSL defaults and overrides,
09:13:37# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:13:37# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:13:37# update the corresponding IceSSL. property.
09:13:37omero.glacier2.IceSSL=
09:13:3709:13:37# Glacier2Template SSL maximum allowed protocol (mac bug)
09:13:37omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:13:37# Glacier2Template SSL allowed cipher suites
09:13:37omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:13:37# Glacier2Template SSL verification requirements
09:13:37omero.glacier2.IceSSL.VerifyPeer=0
09:13:37# Glacier2Template SSL allowed protocols
09:13:37omero.glacier2.IceSSL.Protocols=tls1
09:13:3709:13:37# Override the default set of OMERO services.
09:13:37# For example, to run OMERO.server with Blitz and Tables only
09:13:37# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:13:37# set this to ``master:Blitz-0,Tables-0``.
09:13:37# Also use this to distribute OMERO services across multiple nodes,
09:13:37# for example:
09:13:37# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:13:37# See
09:13:37# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:13:37omero.server.nodedescriptors=
09:13:3709:13:37#############################################
09:13:37## Darwin (OS X) specific defaults for templated configuration files only.
09:13:37## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:13:37## file.
09:13:37## Do not set these properties in ``omero config``, instead set the original
09:13:37## ``xxx.yyy`` property
09:13:37#############################################
09:13:37_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:13:3709:13:37## (For documentation only)
09:13:37# Name of the Python module to use when starting the Tables service
09:13:37omero.tables.module=runTables
09:13:3709:13:37#############################################
09:13:37## Server product name for release artifacts
09:13:37#############################################
09:13:37product.name=OMERO.server
09:13:3709:13:37#############################################
09:13:37### Properties below this marker are ignored by
09:13:37### omero.install.config_parser.PropertyParser
09:13:37### END
09:13:3709:13:37#############################################
09:13:37## Library versions
09:13:37#############################################
09:13:37##
09:13:37versions.findbugs=1.2.1
09:13:37versions.ice36=3.6.5
09:13:37versions.ice36_lib=36
09:13:37## internal
09:13:37versions.omeroshares36=3.6.3
09:13:37versions.omeromock36=3.6.3
09:13:37versions.icedb36=3.6.3
09:13:37versions.ipython=1.2.1
09:13:3709:13:37versions.janino=2.5.10
09:13:3709:13:37versions.reportng=1.1.1
09:13:3709:13:37versions.testng=7.5
09:13:37versions.velocity=1.4
09:13:3709:13:37versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:13:37versions.omero-scripts-url=${versions.omero-pypi}
09:13:3709:13:37###
09:13:37### Appended Values
09:13:37###
09:13:3709:13:37## Internal dependencies'
09:13:37+ echo '##
09:13:37## omero.properties
09:13:37## ----------------
09:13:37##
09:13:37## DO NOT EDIT!
09:13:37##
09:13:37##
09:13:37## Any of these properties can be altered by using `omero config`. MODIFYING
09:13:37## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:13:37## at compile time!
09:13:37##
09:13:37## For an overview of these properties, see
09:13:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:13:37##
09:13:37## Properties marked with "DEVELOPMENT" should not be used in production.
09:13:3709:13:37# Comma separated list of Ice transports available to clients. The default
09:13:37# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:13:37# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:13:37# will prevent all non-encrypted connections to the OMERO server.
09:13:37#
09:13:37# Additionally, there are two experimental values for using websockets:
09:13:37# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:13:37# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:13:37# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:13:37#
09:13:37# Note: When using websockets behind a web server like nginx, additional
09:13:37# configuration may be needed.
09:13:37omero.client.icetransports=ssl,tcp
09:13:3709:13:37# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:13:37# server
09:13:37omero.ports.prefix=
09:13:3709:13:37# The Glacier2 SSL port number to use
09:13:37omero.ports.ssl=4064
09:13:3709:13:37# The Glacier2 TCP port number to use (unencrypted)
09:13:37omero.ports.tcp=4063
09:13:3709:13:37# The Glacier2 WSS port number to use
09:13:37omero.ports.wss=4066
09:13:3709:13:37# The Glacier2 WS port number to use (unencrypted)
09:13:37omero.ports.ws=4065
09:13:3709:13:37# The IceGrid registry port number to use
09:13:37omero.ports.registry=4061
09:13:3709:13:37#############################################
09:13:37## JVM configuration
09:13:37##
09:13:37## Note: changes to the omero.jvmcfg properties
09:13:37## will *not* be reflected in OMERO.server
09:13:37## since they are defined in OMERO.py.
09:13:37#############################################
09:13:37## (For documentation only)
09:13:37# Memory strategy which will be used by default.
09:13:37# Options include: percent, manual
09:13:37omero.jvmcfg.strategy=percent
09:13:3709:13:37## (For documentation only)
09:13:37# Explicit value for the `-Xmx` argument, e.g.
09:13:37# "1g"
09:13:37omero.jvmcfg.heap_size=
09:13:3709:13:37## (For documentation only)
09:13:37# Explicit value for the MaxPermSize argument
09:13:37# to the JVM, e.g. "500M". Ignored for Java8+
09:13:37omero.jvmcfg.perm_gen=
09:13:3709:13:37## (For documentation only)
09:13:37# Toggles on or off heap dumps on OOMs. Default is "off".
09:13:37# The special value "tmp" will create the heap dumps in
09:13:37# your temp directory.
09:13:37omero.jvmcfg.heap_dump=
09:13:3709:13:37## (For documentation only)
09:13:37# Used only by the percent strategy. An integer between 0
09:13:37# and 100 which is the percent of active memory that will
09:13:37# be used by the service.
09:13:37omero.jvmcfg.percent=
09:13:3709:13:37## (For documentation only)
09:13:37# Contains other parameters which should be passed to the
09:13:37# JVM. The value of "append" is treated as if it were on
09:13:37# the command line so will be separated on whitespace.
09:13:37# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:13:37# results in two new arguments.
09:13:37# Note that when using `config set` from the command line
09:13:37# one may need to give a prior `--` option to prevent a value
09:13:37# starting with `-` from already being parsed as an option,
09:13:37# and values may need quoting to prevent whitespace or other
09:13:37# significant characters from being interpreted prematurely.
09:13:3709:13:37omero.jvmcfg.append=
09:13:3709:13:37## (For documentation only)
09:13:37# Manual override of the total system memory that
09:13:37# OMERO will *think* is present on the local OS (MB).
09:13:37# If unset, an attempt will be made to detect the actual
09:13:37# amount: first by using the Python library `psutil` and
09:13:37# if that is not installed, by running a Java tool. If
09:13:37# neither works, 4.0GB is assumed.
09:13:37omero.jvmcfg.system_memory=
09:13:3709:13:37## (For documentation only)
09:13:37# Suggestion for strategies as to the minimum memory
09:13:37# that they will use for calculating JVM settings (MB).
09:13:37omero.jvmcfg.min_system_memory=3414
09:13:3709:13:37## (For documentation only)
09:13:37# Suggestion for strategies as to the maximum memory
09:13:37# that they will use for calculating JVM settings (MB).
09:13:37omero.jvmcfg.max_system_memory=48000
09:13:3709:13:3709:13:37#############################################
09:13:37## Logging properties
09:13:37##
09:13:37## Note: changes to the default omero.logging values in
09:13:37## this file will *not* be reflected in OMERO.server
09:13:37## since they are defined in OMERO.py
09:13:37#############################################
09:13:3709:13:37## (For documentation only)
09:13:37# Relative server directory where the log files should be stored.
09:13:37omero.logging.directory=var/log/
09:13:3709:13:37## (For documentation only)
09:13:37# Whether the server log files should be rotated at a certain time
09:13:37# interval. If true, log files will be rolled over at midnight.
09:13:37# Otherwise, log files will be rolled over at a predetermined size,
09:13:37# see omero.logging.logsize for more information.
09:13:37omero.logging.timedlog=false
09:13:3709:13:37## (For documentation only)
09:13:37# If omero.logging.timedlog is false or unset, specifies the
09:13:37# maximum size of the server log files in bytes above which a
09:13:37# new log file should be created.
09:13:37omero.logging.logsize=5000000
09:13:3709:13:37## (For documentation only)
09:13:37# If omero.logging.timedlog is false or unset, specifies the
09:13:37# number of old server log files that should be kept. Old log
09:13:37# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:13:37omero.logging.lognum=9
09:13:3709:13:37## (For documentation only)
09:13:37# Specifies the threshold for the Python servers log files. Logging messages
09:13:37# which are less severe than this value will be ignored. For a list of
09:13:37# available values, see https://docs.python.org/3/library/logging.html#levels.
09:13:37omero.logging.level=20
09:13:3709:13:37#############################################
09:13:37## Ice overrides
09:13:37##
09:13:37## Though not used directly by OMERO, a number
09:13:37## of properties prefixed with "Ice.*" will
09:13:37## alter the behavior of the OMERO runtime
09:13:37## by configuring the Ice communicators. For a
09:13:37## full listing see:
09:13:37##
09:13:37## http://doc.zeroc.com/display/Ice/Property+Reference09:13:37## For more information see
09:13:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:13:37#############################################
09:13:3709:13:37# Disable IPv6 by setting to 0. Only needed in
09:13:37# certain situations.
09:13:37Ice.IPv6=1
09:13:3709:13:37# Glacier2Template IceSSL defaults and overrides,
09:13:37# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:13:37# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:13:37# update the corresponding IceSSL. property.
09:13:37omero.glacier2.IceSSL=
09:13:3709:13:37# Glacier2Template SSL maximum allowed protocol (mac bug)
09:13:37omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:13:37# Glacier2Template SSL allowed cipher suites
09:13:37omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:13:37# Glacier2Template SSL verification requirements
09:13:37omero.glacier2.IceSSL.VerifyPeer=0
09:13:37# Glacier2Template SSL allowed protocols
09:13:37omero.glacier2.IceSSL.Protocols=tls1
09:13:3709:13:37# Override the default set of OMERO services.
09:13:37# For example, to run OMERO.server with Blitz and Tables only
09:13:37# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:13:37# set this to ``master:Blitz-0,Tables-0``.
09:13:37# Also use this to distribute OMERO services across multiple nodes,
09:13:37# for example:
09:13:37# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:13:37# See
09:13:37# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:13:37omero.server.nodedescriptors=
09:13:3709:13:37#############################################
09:13:37## Darwin (OS X) specific defaults for templated configuration files only.
09:13:37## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:13:37## file.
09:13:37## Do not set these properties in ``omero config``, instead set the original
09:13:37## ``xxx.yyy`` property
09:13:37#############################################
09:13:37_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:13:3709:13:37## (For documentation only)
09:13:37# Name of the Python module to use when starting the Tables service
09:13:37omero.tables.module=runTables
09:13:3709:13:37#############################################
09:13:37## Server product name for release artifacts
09:13:37#############################################
09:13:37product.name=OMERO.server
09:13:3709:13:37#############################################
09:13:37### Properties below this marker are ignored by
09:13:37### omero.install.config_parser.PropertyParser
09:13:37### END
09:13:3709:13:37#############################################
09:13:37## Library versions
09:13:37#############################################
09:13:37##
09:13:37versions.findbugs=1.2.1
09:13:37versions.ice36=3.6.5
09:13:37versions.ice36_lib=36
09:13:37## internal
09:13:37versions.omeroshares36=3.6.3
09:13:37versions.omeromock36=3.6.3
09:13:37versions.icedb36=3.6.3
09:13:37versions.ipython=1.2.1
09:13:3709:13:37versions.janino=2.5.10
09:13:3709:13:37versions.reportng=1.1.1
09:13:3709:13:37versions.testng=7.5
09:13:37versions.velocity=1.4
09:13:3709:13:37versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:13:37versions.omero-scripts-url=${versions.omero-pypi}
09:13:3709:13:37###
09:13:37### Appended Values
09:13:37###
09:13:3709:13:37## Internal dependencies'
09:13:37+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/09:13:37+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive09:13:37+ echo versions.scripts-prefix=
09:13:37+ echo versions.scripts=merge_ci
09:13:37+ cat /home/omero/workspace/OMERO-push/version.properties
09:13:37+ git commit -a -m 'Add version.properties to etc/omero.properties'
09:13:37[detached HEAD db222df6ad] Add version.properties to etc/omero.properties
09:13:37 1 file changed, 46 insertions(+), 6 deletions(-)
09:13:37+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
09:13:39To github.com:snoopycrimecop/openmicroscopy.git
09:13:39 + b51737ada9...db222df6ad HEAD -> merge_ci (forced update)
09:13:40Finished: SUCCESS
