07:17:12Started by upstream project "Trigger" build number 14807:17:12originally caused by:
07:17:12 Started by user devspace07:17:12 Restarted from build #147, stage OMERO Python
07:17:12Running as SYSTEM
07:17:12Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
07:17:13The recommended git tool is: NONE
07:17:13No credentials specified
07:17:13 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
07:17:13Fetching changes from the remote Git repository
07:17:13 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
07:17:13Fetching upstream changes from https://github.com/ome/openmicroscopy.git07:17:13 > git --version # timeout=10
07:17:13 > git --version # 'git version 2.52.0'
07:17:13 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:17:15 > git rev-parse origin/develop^{commit} # timeout=10
07:17:15Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
07:17:15 > git config core.sparsecheckout # timeout=10
07:17:15 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
07:17:16Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
07:17:16 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
07:17:17Cleaning workspace
07:17:17 > git rev-parse --verify HEAD # timeout=10
07:17:17Resetting working tree
07:17:17 > git reset --hard # timeout=10
07:17:17 > git clean -fdx # timeout=10
07:17:17Copied 1 artifact from "OMERO-python-superbuild-build" build number 11507:17:17[OMERO-push] $ /bin/bash -xe /tmp/jenkins3440995403997963795.sh
07:17:17+ rm -rf /home/omero/workspace/OMERO-push/venv
07:17:31+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
07:17:51+ source /home/omero/workspace/OMERO-push/venv/bin/activate
07:17:51++ deactivate nondestructive
07:17:51++ '[' -n '' ']'
07:17:51++ '[' -n '' ']'
07:17:51++ hash -r
07:17:51++ '[' -n '' ']'
07:17:51++ unset VIRTUAL_ENV
07:17:51++ unset VIRTUAL_ENV_PROMPT
07:17:51++ '[' '!' nondestructive = nondestructive ']'
07:17:51++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
07:17:51++ export VIRTUAL_ENV
07:17:51++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:17:51++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:17:51++ export PATH
07:17:51++ '[' -n '' ']'
07:17:51++ '[' -z '' ']'
07:17:51++ _OLD_VIRTUAL_PS1=
07:17:51++ PS1='(venv) '
07:17:51++ export PS1
07:17:51++ VIRTUAL_ENV_PROMPT='(venv) '
07:17:51++ export VIRTUAL_ENV_PROMPT
07:17:51++ hash -r
07:17:51+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
07:17:52Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7007:17:52 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
07:17:52Installing collected packages: pip
07:17:52 Attempting uninstall: pip
07:17:52 Found existing installation: pip 24.0
07:17:52 Uninstalling pip-24.0:
07:17:53 Successfully uninstalled pip-24.0
07:18:03Successfully installed pip-26.2.2
07:18:0307:18:03[notice] A new release of pip is available: 26.2.2 -> 26.3
07:18:03[notice] To update, run: pip install --upgrade pip
07:18:03+ python -m pip install --upgrade certifi
07:18:04Collecting certifi
07:18:04 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
07:18:04Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
07:18:04Installing collected packages: certifi
07:18:04Successfully installed certifi-2026.10.23
07:18:0407:18:04[notice] A new release of pip is available: 26.2.2 -> 26.3
07:18:04[notice] To update, run: pip install --upgrade pip
07:18:04+ pip install -U scc
07:18:05Collecting scc
07:18:05 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
07:18:05Collecting PyGithub>=1.54 (from scc)
07:18:05 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
07:18:05Collecting PyYAML>=5.1 (from scc)
07:18:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
07:18:05Collecting future (from scc)
07:18:05 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
07:18:05Collecting ruamel.yaml (from scc)
07:18:05 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
07:18:05Collecting ruamel.yaml.jinja2 (from scc)
07:18:05 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
07:18:05Collecting six (from scc)
07:18:05 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
07:18:05Collecting urllib3<2 (from scc)
07:18:05 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
07:18:05Collecting yaclifw<0.3,>=0.2.0 (from scc)
07:18:05 Using cached yaclifw-0.2.0-py3-none-any.whl
07:18:05Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
07:18:05 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
07:18:05Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
07:18:05 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
07:18:05Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:18:05 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
07:18:05Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
07:18:05 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
07:18:06Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:18:06 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
07:18:06Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:18:06 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
07:18:06Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:18:06 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
07:18:06Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:18:06 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
07:18:06Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:18:06 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
07:18:06Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
07:18:06Using cached scc-0.20.0-py3-none-any.whl (48 kB)
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07:18:06Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB)
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07:18:06Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
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07:18:06Using cached requests-2.34.2-py3-none-any.whl (73 kB)
07:18:06Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
07:18:06Using cached idna-3.20-py3-none-any.whl (69 kB)
07:18:06Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
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07:18:06Using cached pycparser-3.12-py3-none-any.whl (62 kB)
07:18:06Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
07:18:06Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
07:18:06Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
07:18:06Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
07:18:2007:18:21Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
07:18:2107:18:21[notice] A new release of pip is available: 26.2.2 -> 26.3
07:18:21[notice] To update, run: pip install --upgrade pip
07:18:21+ test -e src
07:18:21+ cd src
07:18:21++ git config github.user
07:18:21+ user=snoopycrimecop
07:18:21+ scc merge develop --no-ask --reset --shallow -S success-only
07:18:282026-11-13 07:18:28,768 [ scc.merge] INFO Merging Pull Request(s) based on develop
07:18:282026-11-13 07:18:28,769 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
07:18:282026-11-13 07:18:28,769 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
07:18:282026-11-13 07:18:28,769 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
07:18:282026-11-13 07:18:28,769 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
07:18:282026-11-13 07:18:28,769 [ scc.merge] INFO Excluding Pull Request(s) without successful status
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO Repository: ome/openmicroscopy
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO Excluded PRs:
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO Already up to date.
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO Merged PRs:
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
07:18:402026-11-13 07:18:40,973 [ scc.merge] INFO
07:18:41+ cp etc/omero.properties etc/omero.properties.bak
07:18:41+ rm etc/omero.properties
07:18:41+ touch etc/omero.properties
07:18:41++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
07:18:41+ ne=249
07:18:41++ sed -n 1,249p etc/omero.properties.bak
07:18:41+ line='##
07:18:41## omero.properties
07:18:41## ----------------
07:18:41##
07:18:41## DO NOT EDIT!
07:18:41##
07:18:41##
07:18:41## Any of these properties can be altered by using `omero config`. MODIFYING
07:18:41## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:18:41## at compile time!
07:18:41##
07:18:41## For an overview of these properties, see
07:18:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:18:41##
07:18:41## Properties marked with "DEVELOPMENT" should not be used in production.
07:18:4107:18:41# Comma separated list of Ice transports available to clients. The default
07:18:41# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:18:41# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:18:41# will prevent all non-encrypted connections to the OMERO server.
07:18:41#
07:18:41# Additionally, there are two experimental values for using websockets:
07:18:41# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:18:41# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:18:41# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:18:41#
07:18:41# Note: When using websockets behind a web server like nginx, additional
07:18:41# configuration may be needed.
07:18:41omero.client.icetransports=ssl,tcp
07:18:4107:18:41# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:18:41# server
07:18:41omero.ports.prefix=
07:18:4107:18:41# The Glacier2 SSL port number to use
07:18:41omero.ports.ssl=4064
07:18:4107:18:41# The Glacier2 TCP port number to use (unencrypted)
07:18:41omero.ports.tcp=4063
07:18:4107:18:41# The Glacier2 WSS port number to use
07:18:41omero.ports.wss=4066
07:18:4107:18:41# The Glacier2 WS port number to use (unencrypted)
07:18:41omero.ports.ws=4065
07:18:4107:18:41# The IceGrid registry port number to use
07:18:41omero.ports.registry=4061
07:18:4107:18:41#############################################
07:18:41## JVM configuration
07:18:41##
07:18:41## Note: changes to the omero.jvmcfg properties
07:18:41## will *not* be reflected in OMERO.server
07:18:41## since they are defined in OMERO.py.
07:18:41#############################################
07:18:41## (For documentation only)
07:18:41# Memory strategy which will be used by default.
07:18:41# Options include: percent, manual
07:18:41omero.jvmcfg.strategy=percent
07:18:4107:18:41## (For documentation only)
07:18:41# Explicit value for the `-Xmx` argument, e.g.
07:18:41# "1g"
07:18:41omero.jvmcfg.heap_size=
07:18:4107:18:41## (For documentation only)
07:18:41# Explicit value for the MaxPermSize argument
07:18:41# to the JVM, e.g. "500M". Ignored for Java8+
07:18:41omero.jvmcfg.perm_gen=
07:18:4107:18:41## (For documentation only)
07:18:41# Toggles on or off heap dumps on OOMs. Default is "off".
07:18:41# The special value "tmp" will create the heap dumps in
07:18:41# your temp directory.
07:18:41omero.jvmcfg.heap_dump=
07:18:4107:18:41## (For documentation only)
07:18:41# Used only by the percent strategy. An integer between 0
07:18:41# and 100 which is the percent of active memory that will
07:18:41# be used by the service.
07:18:41omero.jvmcfg.percent=
07:18:4107:18:41## (For documentation only)
07:18:41# Contains other parameters which should be passed to the
07:18:41# JVM. The value of "append" is treated as if it were on
07:18:41# the command line so will be separated on whitespace.
07:18:41# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:18:41# results in two new arguments.
07:18:41# Note that when using `config set` from the command line
07:18:41# one may need to give a prior `--` option to prevent a value
07:18:41# starting with `-` from already being parsed as an option,
07:18:41# and values may need quoting to prevent whitespace or other
07:18:41# significant characters from being interpreted prematurely.
07:18:4107:18:41omero.jvmcfg.append=
07:18:4107:18:41## (For documentation only)
07:18:41# Manual override of the total system memory that
07:18:41# OMERO will *think* is present on the local OS (MB).
07:18:41# If unset, an attempt will be made to detect the actual
07:18:41# amount: first by using the Python library `psutil` and
07:18:41# if that is not installed, by running a Java tool. If
07:18:41# neither works, 4.0GB is assumed.
07:18:41omero.jvmcfg.system_memory=
07:18:4107:18:41## (For documentation only)
07:18:41# Suggestion for strategies as to the minimum memory
07:18:41# that they will use for calculating JVM settings (MB).
07:18:41omero.jvmcfg.min_system_memory=3414
07:18:4107:18:41## (For documentation only)
07:18:41# Suggestion for strategies as to the maximum memory
07:18:41# that they will use for calculating JVM settings (MB).
07:18:41omero.jvmcfg.max_system_memory=48000
07:18:4107:18:4107:18:41#############################################
07:18:41## Logging properties
07:18:41##
07:18:41## Note: changes to the default omero.logging values in
07:18:41## this file will *not* be reflected in OMERO.server
07:18:41## since they are defined in OMERO.py
07:18:41#############################################
07:18:4107:18:41## (For documentation only)
07:18:41# Relative server directory where the log files should be stored.
07:18:41omero.logging.directory=var/log/
07:18:4107:18:41## (For documentation only)
07:18:41# Whether the server log files should be rotated at a certain time
07:18:41# interval. If true, log files will be rolled over at midnight.
07:18:41# Otherwise, log files will be rolled over at a predetermined size,
07:18:41# see omero.logging.logsize for more information.
07:18:41omero.logging.timedlog=false
07:18:4107:18:41## (For documentation only)
07:18:41# If omero.logging.timedlog is false or unset, specifies the
07:18:41# maximum size of the server log files in bytes above which a
07:18:41# new log file should be created.
07:18:41omero.logging.logsize=5000000
07:18:4107:18:41## (For documentation only)
07:18:41# If omero.logging.timedlog is false or unset, specifies the
07:18:41# number of old server log files that should be kept. Old log
07:18:41# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:18:41omero.logging.lognum=9
07:18:4107:18:41## (For documentation only)
07:18:41# Specifies the threshold for the Python servers log files. Logging messages
07:18:41# which are less severe than this value will be ignored. For a list of
07:18:41# available values, see https://docs.python.org/3/library/logging.html#levels.
07:18:41omero.logging.level=20
07:18:4107:18:41#############################################
07:18:41## Ice overrides
07:18:41##
07:18:41## Though not used directly by OMERO, a number
07:18:41## of properties prefixed with "Ice.*" will
07:18:41## alter the behavior of the OMERO runtime
07:18:41## by configuring the Ice communicators. For a
07:18:41## full listing see:
07:18:41##
07:18:41## http://doc.zeroc.com/display/Ice/Property+Reference07:18:41## For more information see
07:18:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:18:41#############################################
07:18:4107:18:41# Disable IPv6 by setting to 0. Only needed in
07:18:41# certain situations.
07:18:41Ice.IPv6=1
07:18:4107:18:41# Glacier2Template IceSSL defaults and overrides,
07:18:41# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
07:18:41# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:18:41# update the corresponding IceSSL. property.
07:18:41omero.glacier2.IceSSL=
07:18:4107:18:41# Glacier2Template SSL maximum allowed protocol (mac bug)
07:18:41omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:18:41# Glacier2Template SSL allowed cipher suites
07:18:41omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:18:41# Glacier2Template SSL verification requirements
07:18:41omero.glacier2.IceSSL.VerifyPeer=0
07:18:41# Glacier2Template SSL allowed protocols
07:18:41omero.glacier2.IceSSL.Protocols=tls1
07:18:4107:18:41# Override the default set of OMERO services.
07:18:41# For example, to run OMERO.server with Blitz and Tables only
07:18:41# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:18:41# set this to ``master:Blitz-0,Tables-0``.
07:18:41# Also use this to distribute OMERO services across multiple nodes,
07:18:41# for example:
07:18:41# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:18:41# See
07:18:41# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:18:41omero.server.nodedescriptors=
07:18:4107:18:41#############################################
07:18:41## Darwin (OS X) specific defaults for templated configuration files only.
07:18:41## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:18:41## file.
07:18:41## Do not set these properties in ``omero config``, instead set the original
07:18:41## ``xxx.yyy`` property
07:18:41#############################################
07:18:41_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:18:4107:18:41## (For documentation only)
07:18:41# Name of the Python module to use when starting the Tables service
07:18:41omero.tables.module=runTables
07:18:4107:18:41#############################################
07:18:41## Server product name for release artifacts
07:18:41#############################################
07:18:41product.name=OMERO.server
07:18:4107:18:41#############################################
07:18:41### Properties below this marker are ignored by
07:18:41### omero.install.config_parser.PropertyParser
07:18:41### END
07:18:4107:18:41#############################################
07:18:41## Library versions
07:18:41#############################################
07:18:41##
07:18:41versions.findbugs=1.2.1
07:18:41versions.ice36=3.6.5
07:18:41versions.ice36_lib=36
07:18:41## internal
07:18:41versions.omeroshares36=3.6.3
07:18:41versions.omeromock36=3.6.3
07:18:41versions.icedb36=3.6.3
07:18:41versions.ipython=1.2.1
07:18:4107:18:41versions.janino=2.5.10
07:18:4107:18:41versions.reportng=1.1.1
07:18:4107:18:41versions.testng=7.5
07:18:41versions.velocity=1.4
07:18:4107:18:41versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:18:41versions.omero-scripts-url=${versions.omero-pypi}
07:18:4107:18:41###
07:18:41### Appended Values
07:18:41###
07:18:4107:18:41## Internal dependencies'
07:18:41+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/07:18:41JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/07:18:41+ echo '##
07:18:41## omero.properties
07:18:41## ----------------
07:18:41##
07:18:41## DO NOT EDIT!
07:18:41##
07:18:41##
07:18:41## Any of these properties can be altered by using `omero config`. MODIFYING
07:18:41## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:18:41## at compile time!
07:18:41##
07:18:41## For an overview of these properties, see
07:18:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:18:41##
07:18:41## Properties marked with "DEVELOPMENT" should not be used in production.
07:18:4107:18:41# Comma separated list of Ice transports available to clients. The default
07:18:41# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:18:41# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:18:41# will prevent all non-encrypted connections to the OMERO server.
07:18:41#
07:18:41# Additionally, there are two experimental values for using websockets:
07:18:41# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:18:41# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:18:41# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:18:41#
07:18:41# Note: When using websockets behind a web server like nginx, additional
07:18:41# configuration may be needed.
07:18:41omero.client.icetransports=ssl,tcp
07:18:4107:18:41# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:18:41# server
07:18:41omero.ports.prefix=
07:18:4107:18:41# The Glacier2 SSL port number to use
07:18:41omero.ports.ssl=4064
07:18:4107:18:41# The Glacier2 TCP port number to use (unencrypted)
07:18:41omero.ports.tcp=4063
07:18:4107:18:41# The Glacier2 WSS port number to use
07:18:41omero.ports.wss=4066
07:18:4107:18:41# The Glacier2 WS port number to use (unencrypted)
07:18:41omero.ports.ws=4065
07:18:4107:18:41# The IceGrid registry port number to use
07:18:41omero.ports.registry=4061
07:18:4107:18:41#############################################
07:18:41## JVM configuration
07:18:41##
07:18:41## Note: changes to the omero.jvmcfg properties
07:18:41## will *not* be reflected in OMERO.server
07:18:41## since they are defined in OMERO.py.
07:18:41#############################################
07:18:41## (For documentation only)
07:18:41# Memory strategy which will be used by default.
07:18:41# Options include: percent, manual
07:18:41omero.jvmcfg.strategy=percent
07:18:4107:18:41## (For documentation only)
07:18:41# Explicit value for the `-Xmx` argument, e.g.
07:18:41# "1g"
07:18:41omero.jvmcfg.heap_size=
07:18:4107:18:41## (For documentation only)
07:18:41# Explicit value for the MaxPermSize argument
07:18:41# to the JVM, e.g. "500M". Ignored for Java8+
07:18:41omero.jvmcfg.perm_gen=
07:18:4107:18:41## (For documentation only)
07:18:41# Toggles on or off heap dumps on OOMs. Default is "off".
07:18:41# The special value "tmp" will create the heap dumps in
07:18:41# your temp directory.
07:18:41omero.jvmcfg.heap_dump=
07:18:4107:18:41## (For documentation only)
07:18:41# Used only by the percent strategy. An integer between 0
07:18:41# and 100 which is the percent of active memory that will
07:18:41# be used by the service.
07:18:41omero.jvmcfg.percent=
07:18:4107:18:41## (For documentation only)
07:18:41# Contains other parameters which should be passed to the
07:18:41# JVM. The value of "append" is treated as if it were on
07:18:41# the command line so will be separated on whitespace.
07:18:41# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:18:41# results in two new arguments.
07:18:41# Note that when using `config set` from the command line
07:18:41# one may need to give a prior `--` option to prevent a value
07:18:41# starting with `-` from already being parsed as an option,
07:18:41# and values may need quoting to prevent whitespace or other
07:18:41# significant characters from being interpreted prematurely.
07:18:4107:18:41omero.jvmcfg.append=
07:18:4107:18:41## (For documentation only)
07:18:41# Manual override of the total system memory that
07:18:41# OMERO will *think* is present on the local OS (MB).
07:18:41# If unset, an attempt will be made to detect the actual
07:18:41# amount: first by using the Python library `psutil` and
07:18:41# if that is not installed, by running a Java tool. If
07:18:41# neither works, 4.0GB is assumed.
07:18:41omero.jvmcfg.system_memory=
07:18:4107:18:41## (For documentation only)
07:18:41# Suggestion for strategies as to the minimum memory
07:18:41# that they will use for calculating JVM settings (MB).
07:18:41omero.jvmcfg.min_system_memory=3414
07:18:4107:18:41## (For documentation only)
07:18:41# Suggestion for strategies as to the maximum memory
07:18:41# that they will use for calculating JVM settings (MB).
07:18:41omero.jvmcfg.max_system_memory=48000
07:18:4107:18:4107:18:41#############################################
07:18:41## Logging properties
07:18:41##
07:18:41## Note: changes to the default omero.logging values in
07:18:41## this file will *not* be reflected in OMERO.server
07:18:41## since they are defined in OMERO.py
07:18:41#############################################
07:18:4107:18:41## (For documentation only)
07:18:41# Relative server directory where the log files should be stored.
07:18:41omero.logging.directory=var/log/
07:18:4107:18:41## (For documentation only)
07:18:41# Whether the server log files should be rotated at a certain time
07:18:41# interval. If true, log files will be rolled over at midnight.
07:18:41# Otherwise, log files will be rolled over at a predetermined size,
07:18:41# see omero.logging.logsize for more information.
07:18:41omero.logging.timedlog=false
07:18:4107:18:41## (For documentation only)
07:18:41# If omero.logging.timedlog is false or unset, specifies the
07:18:41# maximum size of the server log files in bytes above which a
07:18:41# new log file should be created.
07:18:41omero.logging.logsize=5000000
07:18:4107:18:41## (For documentation only)
07:18:41# If omero.logging.timedlog is false or unset, specifies the
07:18:41# number of old server log files that should be kept. Old log
07:18:41# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:18:41omero.logging.lognum=9
07:18:4107:18:41## (For documentation only)
07:18:41# Specifies the threshold for the Python servers log files. Logging messages
07:18:41# which are less severe than this value will be ignored. For a list of
07:18:41# available values, see https://docs.python.org/3/library/logging.html#levels.
07:18:41omero.logging.level=20
07:18:4107:18:41#############################################
07:18:41## Ice overrides
07:18:41##
07:18:41## Though not used directly by OMERO, a number
07:18:41## of properties prefixed with "Ice.*" will
07:18:41## alter the behavior of the OMERO runtime
07:18:41## by configuring the Ice communicators. For a
07:18:41## full listing see:
07:18:41##
07:18:41## http://doc.zeroc.com/display/Ice/Property+Reference07:18:41## For more information see
07:18:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:18:41#############################################
07:18:4107:18:41# Disable IPv6 by setting to 0. Only needed in
07:18:41# certain situations.
07:18:41Ice.IPv6=1
07:18:4107:18:41# Glacier2Template IceSSL defaults and overrides,
07:18:41# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
07:18:41# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:18:41# update the corresponding IceSSL. property.
07:18:41omero.glacier2.IceSSL=
07:18:4107:18:41# Glacier2Template SSL maximum allowed protocol (mac bug)
07:18:41omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:18:41# Glacier2Template SSL allowed cipher suites
07:18:41omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:18:41# Glacier2Template SSL verification requirements
07:18:41omero.glacier2.IceSSL.VerifyPeer=0
07:18:41# Glacier2Template SSL allowed protocols
07:18:41omero.glacier2.IceSSL.Protocols=tls1
07:18:4107:18:41# Override the default set of OMERO services.
07:18:41# For example, to run OMERO.server with Blitz and Tables only
07:18:41# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:18:41# set this to ``master:Blitz-0,Tables-0``.
07:18:41# Also use this to distribute OMERO services across multiple nodes,
07:18:41# for example:
07:18:41# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:18:41# See
07:18:41# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:18:41omero.server.nodedescriptors=
07:18:4107:18:41#############################################
07:18:41## Darwin (OS X) specific defaults for templated configuration files only.
07:18:41## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:18:41## file.
07:18:41## Do not set these properties in ``omero config``, instead set the original
07:18:41## ``xxx.yyy`` property
07:18:41#############################################
07:18:41_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:18:4107:18:41## (For documentation only)
07:18:41# Name of the Python module to use when starting the Tables service
07:18:41omero.tables.module=runTables
07:18:4107:18:41#############################################
07:18:41## Server product name for release artifacts
07:18:41#############################################
07:18:41product.name=OMERO.server
07:18:4107:18:41#############################################
07:18:41### Properties below this marker are ignored by
07:18:41### omero.install.config_parser.PropertyParser
07:18:41### END
07:18:4107:18:41#############################################
07:18:41## Library versions
07:18:41#############################################
07:18:41##
07:18:41versions.findbugs=1.2.1
07:18:41versions.ice36=3.6.5
07:18:41versions.ice36_lib=36
07:18:41## internal
07:18:41versions.omeroshares36=3.6.3
07:18:41versions.omeromock36=3.6.3
07:18:41versions.icedb36=3.6.3
07:18:41versions.ipython=1.2.1
07:18:4107:18:41versions.janino=2.5.10
07:18:4107:18:41versions.reportng=1.1.1
07:18:4107:18:41versions.testng=7.5
07:18:41versions.velocity=1.4
07:18:4107:18:41versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:18:41versions.omero-scripts-url=${versions.omero-pypi}
07:18:4107:18:41###
07:18:41### Appended Values
07:18:41###
07:18:4107:18:41## Internal dependencies'
07:18:41+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/07:18:41+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive07:18:41+ echo versions.scripts-prefix=
07:18:41+ echo versions.scripts=merge_ci
07:18:41++ curl -fsSL https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv07:18:41++ cut -f3
07:18:41+ OZPB_VERSION=0.8.0-SNAPSHOT
07:18:41+ echo versions.omero-zarr-pixel-buffer=0.8.0-SNAPSHOT
07:18:41+ cat /home/omero/workspace/OMERO-push/version.properties
07:18:41+ git commit -a -m 'Add version.properties to etc/omero.properties'
07:18:41[detached HEAD cd12f814cd] Add version.properties to etc/omero.properties
07:18:41 1 file changed, 46 insertions(+), 6 deletions(-)
07:18:41+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
07:18:44To github.com:snoopycrimecop/openmicroscopy.git
07:18:44 + d972adb4fb...cd12f814cd HEAD -> merge_ci (forced update)
07:18:45Finished: SUCCESS
