12:09:49Started by upstream project "Trigger" build number 2612:09:49originally caused by:
12:09:49 Started by user devspace12:09:49Running as SYSTEM
12:09:49Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
12:09:49The recommended git tool is: NONE
12:09:49No credentials specified
12:09:49 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
12:09:49Fetching changes from the remote Git repository
12:09:49 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
12:09:49Fetching upstream changes from https://github.com/ome/openmicroscopy.git12:09:49 > git --version # timeout=10
12:09:49 > git --version # 'git version 2.52.0'
12:09:49 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:09:52 > git rev-parse origin/develop^{commit} # timeout=10
12:09:52Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
12:09:52 > git config core.sparsecheckout # timeout=10
12:09:52 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
12:11:48Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
12:11:48 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
12:11:48Cleaning workspace
12:11:48 > git rev-parse --verify HEAD # timeout=10
12:11:48Resetting working tree
12:11:48 > git reset --hard # timeout=10
12:11:49 > git clean -fdx # timeout=10
12:11:50Copied 1 artifact from "OMERO-python-superbuild-build" build number 1512:11:50[OMERO-push] $ /bin/bash -xe /tmp/jenkins10374599594677492850.sh
12:11:50+ python3.11 -mvenv venv
12:11:52+ source /home/omero/workspace/OMERO-push/venv/bin/activate
12:11:52++ deactivate nondestructive
12:11:52++ '[' -n '' ']'
12:11:52++ '[' -n '' ']'
12:11:52++ hash -r
12:11:52++ '[' -n '' ']'
12:11:52++ unset VIRTUAL_ENV
12:11:52++ unset VIRTUAL_ENV_PROMPT
12:11:52++ '[' '!' nondestructive = nondestructive ']'
12:11:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
12:11:52++ export VIRTUAL_ENV
12:11:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:11:52++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:11:52++ export PATH
12:11:52++ '[' -n '' ']'
12:11:52++ '[' -z '' ']'
12:11:52++ _OLD_VIRTUAL_PS1=
12:11:52++ PS1='(venv) '
12:11:52++ export PS1
12:11:52++ VIRTUAL_ENV_PROMPT='(venv) '
12:11:52++ export VIRTUAL_ENV_PROMPT
12:11:52++ hash -r
12:11:52+ pip install -U pip
12:11:57Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
12:11:58+ pip install -U scc
12:11:58Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
12:11:59Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
12:11:59Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
12:11:59Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
12:11:59Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
12:11:59Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
12:11:59Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
12:11:59Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
12:11:59Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
12:11:59Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
12:11:59Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
12:11:59Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
12:11:59Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
12:11:59Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
12:11:59Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
12:11:59Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
12:11:59Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
12:11:59Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
12:11:59Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
12:11:59+ test -e src
12:11:59+ cd src
12:11:59++ git config github.user
12:11:59+ user=snoopycrimecop
12:11:59+ scc merge develop --no-ask --reset --shallow -S success-only
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Merging Pull Request(s) based on develop
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
12:12:082026-07-22 12:12:08,743 [ scc.merge] INFO Excluding Pull Request(s) without successful status
12:12:592026-07-22 12:12:59,613 [ scc.merge] INFO Repository: ome/openmicroscopy
12:12:592026-07-22 12:12:59,613 [ scc.merge] INFO Excluded PRs:
12:12:592026-07-22 12:12:59,613 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
12:12:592026-07-22 12:12:59,613 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO Already up to date.
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO Merged PRs:
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6465 pwalczysko 'Fix also the test_remove__pre_fs_pyramids'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6466 pwalczysko 'Fix test_remove_pyramids_check_thumbs NFS'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6467 pwalczysko 'Test thumbs'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO - PR 6469 pwalczysko 'Fix test_render_image_region_tile_params_big_image'
12:12:592026-07-22 12:12:59,614 [ scc.merge] INFO
12:12:59+ cp etc/omero.properties etc/omero.properties.bak
12:12:59+ rm etc/omero.properties
12:12:59+ touch etc/omero.properties
12:12:59++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
12:12:59+ ne=249
12:12:59++ sed -n 1,249p etc/omero.properties.bak
12:12:59+ line='##
12:12:59## omero.properties
12:12:59## ----------------
12:12:59##
12:12:59## DO NOT EDIT!
12:12:59##
12:12:59##
12:12:59## Any of these properties can be altered by using `omero config`. MODIFYING
12:12:59## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:12:59## at compile time!
12:12:59##
12:12:59## For an overview of these properties, see
12:12:59## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:12:59##
12:12:59## Properties marked with "DEVELOPMENT" should not be used in production.
12:12:5912:12:59# Comma separated list of Ice transports available to clients. The default
12:12:59# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:12:59# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:12:59# will prevent all non-encrypted connections to the OMERO server.
12:12:59#
12:12:59# Additionally, there are two experimental values for using websockets:
12:12:59# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:12:59# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:12:59# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:12:59#
12:12:59# Note: When using websockets behind a web server like nginx, additional
12:12:59# configuration may be needed.
12:12:59omero.client.icetransports=ssl,tcp
12:12:5912:12:59# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:12:59# server
12:12:59omero.ports.prefix=
12:12:5912:12:59# The Glacier2 SSL port number to use
12:12:59omero.ports.ssl=4064
12:12:5912:12:59# The Glacier2 TCP port number to use (unencrypted)
12:12:59omero.ports.tcp=4063
12:12:5912:12:59# The Glacier2 WSS port number to use
12:12:59omero.ports.wss=4066
12:12:5912:12:59# The Glacier2 WS port number to use (unencrypted)
12:12:59omero.ports.ws=4065
12:12:5912:12:59# The IceGrid registry port number to use
12:12:59omero.ports.registry=4061
12:12:5912:12:59#############################################
12:12:59## JVM configuration
12:12:59##
12:12:59## Note: changes to the omero.jvmcfg properties
12:12:59## will *not* be reflected in OMERO.server
12:12:59## since they are defined in OMERO.py.
12:12:59#############################################
12:12:59## (For documentation only)
12:12:59# Memory strategy which will be used by default.
12:12:59# Options include: percent, manual
12:12:59omero.jvmcfg.strategy=percent
12:12:5912:12:59## (For documentation only)
12:12:59# Explicit value for the `-Xmx` argument, e.g.
12:12:59# "1g"
12:12:59omero.jvmcfg.heap_size=
12:12:5912:12:59## (For documentation only)
12:12:59# Explicit value for the MaxPermSize argument
12:12:59# to the JVM, e.g. "500M". Ignored for Java8+
12:12:59omero.jvmcfg.perm_gen=
12:12:5912:12:59## (For documentation only)
12:12:59# Toggles on or off heap dumps on OOMs. Default is "off".
12:12:59# The special value "tmp" will create the heap dumps in
12:12:59# your temp directory.
12:12:59omero.jvmcfg.heap_dump=
12:12:5912:12:59## (For documentation only)
12:12:59# Used only by the percent strategy. An integer between 0
12:12:59# and 100 which is the percent of active memory that will
12:12:59# be used by the service.
12:12:59omero.jvmcfg.percent=
12:12:5912:12:59## (For documentation only)
12:12:59# Contains other parameters which should be passed to the
12:12:59# JVM. The value of "append" is treated as if it were on
12:12:59# the command line so will be separated on whitespace.
12:12:59# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:12:59# results in two new arguments.
12:12:59# Note that when using `config set` from the command line
12:12:59# one may need to give a prior `--` option to prevent a value
12:12:59# starting with `-` from already being parsed as an option,
12:12:59# and values may need quoting to prevent whitespace or other
12:12:59# significant characters from being interpreted prematurely.
12:12:5912:12:59omero.jvmcfg.append=
12:12:5912:12:59## (For documentation only)
12:12:59# Manual override of the total system memory that
12:12:59# OMERO will *think* is present on the local OS (MB).
12:12:59# If unset, an attempt will be made to detect the actual
12:12:59# amount: first by using the Python library `psutil` and
12:12:59# if that is not installed, by running a Java tool. If
12:12:59# neither works, 4.0GB is assumed.
12:12:59omero.jvmcfg.system_memory=
12:12:5912:12:59## (For documentation only)
12:12:59# Suggestion for strategies as to the minimum memory
12:12:59# that they will use for calculating JVM settings (MB).
12:12:59omero.jvmcfg.min_system_memory=3414
12:12:5912:12:59## (For documentation only)
12:12:59# Suggestion for strategies as to the maximum memory
12:12:59# that they will use for calculating JVM settings (MB).
12:12:59omero.jvmcfg.max_system_memory=48000
12:12:5912:12:5912:12:59#############################################
12:12:59## Logging properties
12:12:59##
12:12:59## Note: changes to the default omero.logging values in
12:12:59## this file will *not* be reflected in OMERO.server
12:12:59## since they are defined in OMERO.py
12:12:59#############################################
12:12:5912:12:59## (For documentation only)
12:12:59# Relative server directory where the log files should be stored.
12:12:59omero.logging.directory=var/log/
12:12:5912:12:59## (For documentation only)
12:12:59# Whether the server log files should be rotated at a certain time
12:12:59# interval. If true, log files will be rolled over at midnight.
12:12:59# Otherwise, log files will be rolled over at a predetermined size,
12:12:59# see omero.logging.logsize for more information.
12:12:59omero.logging.timedlog=false
12:12:5912:12:59## (For documentation only)
12:12:59# If omero.logging.timedlog is false or unset, specifies the
12:12:59# maximum size of the server log files in bytes above which a
12:12:59# new log file should be created.
12:12:59omero.logging.logsize=5000000
12:12:5912:12:59## (For documentation only)
12:12:59# If omero.logging.timedlog is false or unset, specifies the
12:12:59# number of old server log files that should be kept. Old log
12:12:59# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:12:59omero.logging.lognum=9
12:12:5912:12:59## (For documentation only)
12:12:59# Specifies the threshold for the Python servers log files. Logging messages
12:12:59# which are less severe than this value will be ignored. For a list of
12:12:59# available values, see https://docs.python.org/3/library/logging.html#levels.
12:12:59omero.logging.level=20
12:12:5912:12:59#############################################
12:12:59## Ice overrides
12:12:59##
12:12:59## Though not used directly by OMERO, a number
12:12:59## of properties prefixed with "Ice.*" will
12:12:59## alter the behavior of the OMERO runtime
12:12:59## by configuring the Ice communicators. For a
12:12:59## full listing see:
12:12:59##
12:12:59## http://doc.zeroc.com/display/Ice/Property+Reference12:12:59## For more information see
12:12:59## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:12:59#############################################
12:12:5912:12:59# Disable IPv6 by setting to 0. Only needed in
12:12:59# certain situations.
12:12:59Ice.IPv6=1
12:12:5912:12:59# Glacier2Template IceSSL defaults and overrides,
12:12:59# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:12:59# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:12:59# update the corresponding IceSSL. property.
12:12:59omero.glacier2.IceSSL=
12:12:5912:12:59# Glacier2Template SSL maximum allowed protocol (mac bug)
12:12:59omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:12:59# Glacier2Template SSL allowed cipher suites
12:12:59omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:12:59# Glacier2Template SSL verification requirements
12:12:59omero.glacier2.IceSSL.VerifyPeer=0
12:12:59# Glacier2Template SSL allowed protocols
12:12:59omero.glacier2.IceSSL.Protocols=tls1
12:12:5912:12:59# Override the default set of OMERO services.
12:12:59# For example, to run OMERO.server with Blitz and Tables only
12:12:59# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:12:59# set this to ``master:Blitz-0,Tables-0``.
12:12:59# Also use this to distribute OMERO services across multiple nodes,
12:12:59# for example:
12:12:59# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:12:59# See
12:12:59# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:12:59omero.server.nodedescriptors=
12:12:5912:12:59#############################################
12:12:59## Darwin (OS X) specific defaults for templated configuration files only.
12:12:59## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:12:59## file.
12:12:59## Do not set these properties in ``omero config``, instead set the original
12:12:59## ``xxx.yyy`` property
12:12:59#############################################
12:12:59_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:12:5912:12:59## (For documentation only)
12:12:59# Name of the Python module to use when starting the Tables service
12:12:59omero.tables.module=runTables
12:12:5912:12:59#############################################
12:12:59## Server product name for release artifacts
12:12:59#############################################
12:12:59product.name=OMERO.server
12:12:5912:12:59#############################################
12:12:59### Properties below this marker are ignored by
12:12:59### omero.install.config_parser.PropertyParser
12:12:59### END
12:12:5912:12:59#############################################
12:12:59## Library versions
12:12:59#############################################
12:12:59##
12:12:59versions.findbugs=1.2.1
12:12:59versions.ice36=3.6.5
12:12:59versions.ice36_lib=36
12:12:59## internal
12:12:59versions.omeroshares36=3.6.3
12:12:59versions.omeromock36=3.6.3
12:12:59versions.icedb36=3.6.3
12:12:59versions.ipython=1.2.1
12:12:5912:12:59versions.janino=2.5.10
12:12:5912:12:59versions.reportng=1.1.1
12:12:5912:12:59versions.testng=7.5
12:12:59versions.velocity=1.4
12:12:5912:12:59versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:12:59versions.omero-scripts-url=${versions.omero-pypi}
12:12:5912:12:59###
12:12:59### Appended Values
12:12:59###
12:12:5912:12:59## Internal dependencies'
12:12:59+ echo '##
12:12:59## omero.properties
12:12:59## ----------------
12:12:59##
12:12:59## DO NOT EDIT!
12:12:59##
12:12:59##
12:12:59## Any of these properties can be altered by using `omero config`. MODIFYING
12:12:59## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:12:59## at compile time!
12:12:59##
12:12:59## For an overview of these properties, see
12:12:59## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:12:59##
12:12:59## Properties marked with "DEVELOPMENT" should not be used in production.
12:12:5912:12:59# Comma separated list of Ice transports available to clients. The default
12:12:59# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:12:59# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:12:59# will prevent all non-encrypted connections to the OMERO server.
12:12:59#
12:12:59# Additionally, there are two experimental values for using websockets:
12:12:59# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:12:59# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:12:59# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:12:59#
12:12:59# Note: When using websockets behind a web server like nginx, additional
12:12:59# configuration may be needed.
12:12:59omero.client.icetransports=ssl,tcp
12:12:5912:12:59# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:12:59# server
12:12:59omero.ports.prefix=
12:12:5912:12:59# The Glacier2 SSL port number to use
12:12:59omero.ports.ssl=4064
12:12:5912:12:59# The Glacier2 TCP port number to use (unencrypted)
12:12:59omero.ports.tcp=4063
12:12:5912:12:59# The Glacier2 WSS port number to use
12:12:59omero.ports.wss=4066
12:12:5912:12:59# The Glacier2 WS port number to use (unencrypted)
12:12:59omero.ports.ws=4065
12:12:5912:12:59# The IceGrid registry port number to use
12:12:59omero.ports.registry=4061
12:12:5912:12:59#############################################
12:12:59## JVM configuration
12:12:59##
12:12:59## Note: changes to the omero.jvmcfg properties
12:12:59## will *not* be reflected in OMERO.server
12:12:59## since they are defined in OMERO.py.
12:12:59#############################################
12:12:59## (For documentation only)
12:12:59# Memory strategy which will be used by default.
12:12:59# Options include: percent, manual
12:12:59omero.jvmcfg.strategy=percent
12:12:5912:12:59## (For documentation only)
12:12:59# Explicit value for the `-Xmx` argument, e.g.
12:12:59# "1g"
12:12:59omero.jvmcfg.heap_size=
12:12:5912:12:59## (For documentation only)
12:12:59# Explicit value for the MaxPermSize argument
12:12:59# to the JVM, e.g. "500M". Ignored for Java8+
12:12:59omero.jvmcfg.perm_gen=
12:12:5912:12:59## (For documentation only)
12:12:59# Toggles on or off heap dumps on OOMs. Default is "off".
12:12:59# The special value "tmp" will create the heap dumps in
12:12:59# your temp directory.
12:12:59omero.jvmcfg.heap_dump=
12:12:5912:12:59## (For documentation only)
12:12:59# Used only by the percent strategy. An integer between 0
12:12:59# and 100 which is the percent of active memory that will
12:12:59# be used by the service.
12:12:59omero.jvmcfg.percent=
12:12:5912:12:59## (For documentation only)
12:12:59# Contains other parameters which should be passed to the
12:12:59# JVM. The value of "append" is treated as if it were on
12:12:59# the command line so will be separated on whitespace.
12:12:59# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:12:59# results in two new arguments.
12:12:59# Note that when using `config set` from the command line
12:12:59# one may need to give a prior `--` option to prevent a value
12:12:59# starting with `-` from already being parsed as an option,
12:12:59# and values may need quoting to prevent whitespace or other
12:12:59# significant characters from being interpreted prematurely.
12:12:5912:12:59omero.jvmcfg.append=
12:12:5912:12:59## (For documentation only)
12:12:59# Manual override of the total system memory that
12:12:59# OMERO will *think* is present on the local OS (MB).
12:12:59# If unset, an attempt will be made to detect the actual
12:12:59# amount: first by using the Python library `psutil` and
12:12:59# if that is not installed, by running a Java tool. If
12:12:59# neither works, 4.0GB is assumed.
12:12:59omero.jvmcfg.system_memory=
12:12:5912:12:59## (For documentation only)
12:12:59# Suggestion for strategies as to the minimum memory
12:12:59# that they will use for calculating JVM settings (MB).
12:12:59omero.jvmcfg.min_system_memory=3414
12:12:5912:12:59## (For documentation only)
12:12:59# Suggestion for strategies as to the maximum memory
12:12:59# that they will use for calculating JVM settings (MB).
12:12:59omero.jvmcfg.max_system_memory=48000
12:12:5912:12:5912:12:59#############################################
12:12:59## Logging properties
12:12:59##
12:12:59## Note: changes to the default omero.logging values in
12:12:59## this file will *not* be reflected in OMERO.server
12:12:59## since they are defined in OMERO.py
12:12:59#############################################
12:12:5912:12:59## (For documentation only)
12:12:59# Relative server directory where the log files should be stored.
12:12:59omero.logging.directory=var/log/
12:12:5912:12:59## (For documentation only)
12:12:59# Whether the server log files should be rotated at a certain time
12:12:59# interval. If true, log files will be rolled over at midnight.
12:12:59# Otherwise, log files will be rolled over at a predetermined size,
12:12:59# see omero.logging.logsize for more information.
12:12:59omero.logging.timedlog=false
12:12:5912:12:59## (For documentation only)
12:12:59# If omero.logging.timedlog is false or unset, specifies the
12:12:59# maximum size of the server log files in bytes above which a
12:12:59# new log file should be created.
12:12:59omero.logging.logsize=5000000
12:12:5912:12:59## (For documentation only)
12:12:59# If omero.logging.timedlog is false or unset, specifies the
12:12:59# number of old server log files that should be kept. Old log
12:12:59# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:12:59omero.logging.lognum=9
12:12:5912:12:59## (For documentation only)
12:12:59# Specifies the threshold for the Python servers log files. Logging messages
12:12:59# which are less severe than this value will be ignored. For a list of
12:12:59# available values, see https://docs.python.org/3/library/logging.html#levels.
12:12:59omero.logging.level=20
12:12:5912:12:59#############################################
12:12:59## Ice overrides
12:12:59##
12:12:59## Though not used directly by OMERO, a number
12:12:59## of properties prefixed with "Ice.*" will
12:12:59## alter the behavior of the OMERO runtime
12:12:59## by configuring the Ice communicators. For a
12:12:59## full listing see:
12:12:59##
12:12:59## http://doc.zeroc.com/display/Ice/Property+Reference12:12:59## For more information see
12:12:59## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:12:59#############################################
12:12:5912:12:59# Disable IPv6 by setting to 0. Only needed in
12:12:59# certain situations.
12:12:59Ice.IPv6=1
12:12:5912:12:59# Glacier2Template IceSSL defaults and overrides,
12:12:59# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:12:59# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:12:59# update the corresponding IceSSL. property.
12:12:59omero.glacier2.IceSSL=
12:12:5912:12:59# Glacier2Template SSL maximum allowed protocol (mac bug)
12:12:59omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:12:59# Glacier2Template SSL allowed cipher suites
12:12:59omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:12:59# Glacier2Template SSL verification requirements
12:12:59omero.glacier2.IceSSL.VerifyPeer=0
12:12:59# Glacier2Template SSL allowed protocols
12:12:59omero.glacier2.IceSSL.Protocols=tls1
12:12:5912:12:59# Override the default set of OMERO services.
12:12:59# For example, to run OMERO.server with Blitz and Tables only
12:12:59# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:12:59# set this to ``master:Blitz-0,Tables-0``.
12:12:59# Also use this to distribute OMERO services across multiple nodes,
12:12:59# for example:
12:12:59# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:12:59# See
12:12:59# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:12:59omero.server.nodedescriptors=
12:12:5912:12:59#############################################
12:12:59## Darwin (OS X) specific defaults for templated configuration files only.
12:12:59## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:12:59## file.
12:12:59## Do not set these properties in ``omero config``, instead set the original
12:12:59## ``xxx.yyy`` property
12:12:59#############################################
12:12:59_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:12:5912:12:59## (For documentation only)
12:12:59# Name of the Python module to use when starting the Tables service
12:12:59omero.tables.module=runTables
12:12:5912:12:59#############################################
12:12:59## Server product name for release artifacts
12:12:59#############################################
12:12:59product.name=OMERO.server
12:12:5912:12:59#############################################
12:12:59### Properties below this marker are ignored by
12:12:59### omero.install.config_parser.PropertyParser
12:12:59### END
12:12:5912:12:59#############################################
12:12:59## Library versions
12:12:59#############################################
12:12:59##
12:12:59versions.findbugs=1.2.1
12:12:59versions.ice36=3.6.5
12:12:59versions.ice36_lib=36
12:12:59## internal
12:12:59versions.omeroshares36=3.6.3
12:12:59versions.omeromock36=3.6.3
12:12:59versions.icedb36=3.6.3
12:12:59versions.ipython=1.2.1
12:12:5912:12:59versions.janino=2.5.10
12:12:5912:12:59versions.reportng=1.1.1
12:12:5912:12:59versions.testng=7.5
12:12:59versions.velocity=1.4
12:12:5912:12:59versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:12:59versions.omero-scripts-url=${versions.omero-pypi}
12:12:5912:12:59###
12:12:59### Appended Values
12:12:59###
12:12:5912:12:59## Internal dependencies'
12:12:59+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/12:12:59+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive12:12:59+ echo versions.scripts-prefix=
12:12:59+ echo versions.scripts=merge_ci
12:12:59+ cat /home/omero/workspace/OMERO-push/version.properties
12:12:59+ git commit -a -m 'Add version.properties to etc/omero.properties'
12:13:00[detached HEAD 6181d3b055] Add version.properties to etc/omero.properties
12:13:00 1 file changed, 46 insertions(+), 6 deletions(-)
12:13:00+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
12:13:03To github.com:snoopycrimecop/openmicroscopy.git
12:13:03 + 8fd4dc4071...6181d3b055 HEAD -> merge_ci (forced update)
12:13:03Finished: SUCCESS
